10x Xenium
Mouse skin of body
GSM8941357
bronze Interactive viewer Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 57858, 48295), (1, 28929, 24147), (1, 14464, 12073), (1, 7232, 6036), (1, 3616, 3018)
├── Labels
│ └── 'nucleus_labels': DataTree[yx] (56778, 48041), (28389, 24020), (14194, 12010), (7097, 6005), (3548, 3002)
├── Points
│ └── 'transcripts': DataFrame with shape: (4412332, 11) (3D points)
├── Shapes
│ ├── 'cell_circles': GeoDataFrame shape: (40371, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (40371, 2) (2D shapes)
└── Tables
└── 'table': AnnData (40371, 480)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), nucleus_labels (Labels), transcripts (Points), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("JuGGHhrSg6W5ak9o0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("JuGGHhrSg6W5ak9o") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download JuGGHhrSg6W5ak9o0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/JuGGHhrSg6W5ak9o
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid JuGGHhrSg6W5ak9oLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- skin of body
- Modality
- RNA
- Observations (cells)
- 40,371
- Transcripts
- 4,412,332
- Tier
- bronze
- Size
- 1.1 GB
- Sample ID
- GSM8941357
- License
- NCBI GEO policy
- Published
- Jun 4, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB