10x Xenium
Mouse pancreas
GSM9433821
bronze Interactive viewer Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 37439, 22787), (1, 18719, 11393), (1, 9359, 5696), (1, 4679, 2848), (1, 2339, 1424)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (35668, 22199), (17834, 11099), (8917, 5549), (4458, 2774), (2229, 1387)
│ └── 'nucleus_labels': DataTree[yx] (35582, 22059), (17791, 11029), (8895, 5514), (4447, 2757), (2223, 1378)
├── Points
│ └── 'transcripts': DataFrame with shape: (42250003, 10) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (138970, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (138970, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (138970, 1) (2D shapes)
└── Tables
└── 'table': AnnData (138970, 480)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("QDrI76jApwMzffj40000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("QDrI76jApwMzffj4") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download QDrI76jApwMzffj40000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/QDrI76jApwMzffj4
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid QDrI76jApwMzffj4License: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- pancreas
- Modality
- RNA
- Observations (cells)
- 138,970
- Transcripts
- 42,250,003
- Tier
- bronze
- Size
- 2.7 GB
- Sample ID
- GSM9433821
- License
- NCBI GEO policy
- Published
- Mar 18, 2026
Cite this dataset
doi.org/10.1016/j.cell.2026.03.032 ↗ BibTeX
@article{geo:GSM9433821,
doi = {10.1016/j.cell.2026.03.032},
title = {GSM9433821},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB