10x Xenium
Mouse pancreas
GSM9921342
silver Interactive viewer pancreatic ductal adenocarcinoma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 37366, 39895), (1, 18683, 19947), (1, 9341, 9973), (1, 4670, 4986), (1, 2335, 2493)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (37072, 39678), (18536, 19839), (9268, 9919), (4634, 4959), (2317, 2479)
│ └── 'nucleus_labels': DataTree[yx] (37046, 39644), (18523, 19822), (9261, 9911), (4630, 4955), (2315, 2477)
├── Points
│ └── 'transcripts': DataFrame with shape: (88775366, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (454031, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (454031, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (455168, 2) (2D shapes)
└── Tables
└── 'table': AnnData (454031, 475)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("NiZ6tHdMsYdhb1l20000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("NiZ6tHdMsYdhb1l2") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download NiZ6tHdMsYdhb1l20000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/NiZ6tHdMsYdhb1l2
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid NiZ6tHdMsYdhb1l2License: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- pancreas
- Condition
- pancreatic ductal adenocarcinoma
- Modality
- RNA
- Observations (cells)
- 454,031
- Transcripts
- 88,775,366
- Tier
- silver
- Size
- 4.0 GB
- Sample ID
- GSM9921342
- License
- NCBI GEO policy
- Published
- Aug 27, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB