10x Xenium
Mouse pancreas
GSM9433824
bronze Interactive viewer Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 23885, 34116), (1, 11942, 17058), (1, 5971, 8529), (1, 2985, 4264), (1, 1492, 2132)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (23881, 32512), (11940, 16256), (5970, 8128), (2985, 4064), (1492, 2032)
│ └── 'nucleus_labels': DataTree[yx] (23741, 32432), (11870, 16216), (5935, 8108), (2967, 4054), (1483, 2027)
├── Points
│ └── 'transcripts': DataFrame with shape: (58640312, 10) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (219619, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (219619, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (219619, 1) (2D shapes)
└── Tables
└── 'table': AnnData (219619, 480)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("jPDcsAciuF7rn6fD0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("jPDcsAciuF7rn6fD") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download jPDcsAciuF7rn6fD0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/jPDcsAciuF7rn6fD
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid jPDcsAciuF7rn6fDLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- pancreas
- Modality
- RNA
- Observations (cells)
- 219,619
- Transcripts
- 58,640,312
- Tier
- bronze
- Size
- 3.6 GB
- Sample ID
- GSM9433824
- License
- NCBI GEO policy
- Published
- Mar 18, 2026
Cite this dataset
doi.org/10.1016/j.cell.2026.03.032 ↗ BibTeX
@article{geo:GSM9433824,
doi = {10.1016/j.cell.2026.03.032},
title = {GSM9433824},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB