10x Xenium
Mouse pancreas
GSM9433831
bronze Interactive viewer Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 54469, 53993), (1, 27234, 26996), (1, 13617, 13498), (1, 6808, 6749), (1, 3404, 3374)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (53392, 53779), (26696, 26889), (13348, 13444), (6674, 6722), (3337, 3361)
│ └── 'nucleus_labels': DataTree[yx] (53370, 53773), (26685, 26886), (13342, 13443), (6671, 6721), (3335, 3360)
├── Points
│ └── 'transcripts': DataFrame with shape: (115027010, 11) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (531738, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (531738, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (532306, 2) (2D shapes)
└── Tables
└── 'table': AnnData (531738, 480)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("CaPWuAcsg6jduTgb0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("CaPWuAcsg6jduTgb") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download CaPWuAcsg6jduTgb0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/CaPWuAcsg6jduTgb
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid CaPWuAcsg6jduTgbLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- pancreas
- Modality
- RNA
- Observations (cells)
- 531,738
- Transcripts
- 115,027,010
- Tier
- bronze
- Size
- 8.6 GB
- Sample ID
- GSM9433831
- License
- NCBI GEO policy
- Published
- Mar 18, 2026
Cite this dataset
doi.org/10.1016/j.cell.2026.03.032 ↗ BibTeX
@article{geo:GSM9433831,
doi = {10.1016/j.cell.2026.03.032},
title = {GSM9433831},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB