10x Xenium
Mouse pancreas
GSM9433822
bronze Interactive viewer Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 71361, 45448), (1, 35680, 22724), (1, 17840, 11362), (1, 8920, 5681), (1, 4460, 2840)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (70605, 45447), (35302, 22723), (17651, 11361), (8825, 5680), (4412, 2840)
│ └── 'nucleus_labels': DataTree[yx] (70465, 45381), (35232, 22690), (17616, 11345), (8808, 5672), (4404, 2836)
├── Points
│ └── 'transcripts': DataFrame with shape: (156152451, 10) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (587225, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (587225, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (587225, 1) (2D shapes)
└── Tables
└── 'table': AnnData (587225, 480)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("7pf0eS2B8g5LntKR0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("7pf0eS2B8g5LntKR") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download 7pf0eS2B8g5LntKR0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/7pf0eS2B8g5LntKR
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 7pf0eS2B8g5LntKRLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- pancreas
- Modality
- RNA
- Observations (cells)
- 587,225
- Transcripts
- 156,152,451
- Tier
- bronze
- Size
- 10.4 GB
- Sample ID
- GSM9433822
- License
- NCBI GEO policy
- Published
- Mar 18, 2026
Cite this dataset
doi.org/10.1016/j.cell.2026.03.032 ↗ BibTeX
@article{geo:GSM9433822,
doi = {10.1016/j.cell.2026.03.032},
title = {GSM9433822},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB