10x Xenium
Human ovary
GSM9981856
silver Interactive viewer ovarian cancer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 40896, 53933), (1, 20448, 26966), (1, 10224, 13483), (1, 5112, 6741), (1, 2556, 3370)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (40815, 52678), (20407, 26339), (10203, 13169), (5101, 6584), (2550, 3292)
│ └── 'nucleus_labels': DataTree[yx] (40773, 52599), (20386, 26299), (10193, 13149), (5096, 6574), (2548, 3287)
├── Points
│ └── 'transcripts': DataFrame with shape: (151173543, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (437136, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (437136, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (437986, 2) (2D shapes)
└── Tables
└── 'table': AnnData (437136, 480)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("aWgoDlPo2wqLqUob0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("aWgoDlPo2wqLqUob") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download aWgoDlPo2wqLqUob0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/aWgoDlPo2wqLqUob
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid aWgoDlPo2wqLqUobLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- ovary
- Condition
- ovarian cancer
- Modality
- RNA
- Observations (cells)
- 437,136
- Transcripts
- 151,173,543
- Tier
- silver
- Size
- 6.4 GB
- Sample ID
- GSM9981856
- License
- NCBI GEO policy
- Published
- Aug 27, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB