10x Xenium
Human middle temporal gyrus
GSM9822861
bronze Interactive viewer Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 108694, 51093), (1, 54347, 25546), (1, 27173, 12773), (1, 13586, 6386), (1, 6793, 3193)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (108666, 50973), (54333, 25486), (27166, 12743), (13583, 6371), (6791, 3185)
│ └── 'nucleus_labels': DataTree[yx] (108591, 50855), (54295, 25427), (27147, 12713), (13573, 6356), (6786, 3178)
├── Points
│ └── 'transcripts': DataFrame with shape: (90451135, 11) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (145605, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (145605, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (144854, 2) (2D shapes)
└── Tables
└── 'table': AnnData (145605, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("YLSofzf9a8FX9zK00000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("YLSofzf9a8FX9zK0") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download YLSofzf9a8FX9zK00000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/YLSofzf9a8FX9zK0
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid YLSofzf9a8FX9zK0License: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- middle temporal gyrus
- Modality
- RNA
- Observations (cells)
- 145,605
- Transcripts
- 90,451,135
- Tier
- bronze
- Size
- 7.8 GB
- Sample ID
- GSM9822861
- License
- NCBI GEO policy
- Published
- Jul 31, 2026
Cite this dataset
doi.org/10.1016/j.cell.2026.07.007 ↗ BibTeX
@article{geo:GSM9822861,
doi = {10.1016/j.cell.2026.07.007},
title = {GSM9822861},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB