10x Xenium
Human middle temporal gyrus
GSM9822860
bronze Interactive viewer Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 101917, 51097), (1, 50958, 25548), (1, 25479, 12774), (1, 12739, 6387), (1, 6369, 3193)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (101917, 51096), (50958, 25548), (25479, 12774), (12739, 6387), (6369, 3193)
│ └── 'nucleus_labels': DataTree[yx] (101873, 50332), (50936, 25166), (25468, 12583), (12734, 6291), (6367, 3145)
├── Points
│ └── 'transcripts': DataFrame with shape: (125242120, 11) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (188921, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (188921, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (188173, 2) (2D shapes)
└── Tables
└── 'table': AnnData (188921, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("VN28eXX6bvByLEU70000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("VN28eXX6bvByLEU7") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download VN28eXX6bvByLEU70000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/VN28eXX6bvByLEU7
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid VN28eXX6bvByLEU7License: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- middle temporal gyrus
- Modality
- RNA
- Observations (cells)
- 188,921
- Transcripts
- 125,242,120
- Tier
- bronze
- Size
- 9.3 GB
- Sample ID
- GSM9822860
- License
- NCBI GEO policy
- Published
- Jul 31, 2026
Cite this dataset
doi.org/10.1016/j.cell.2026.07.007 ↗ BibTeX
@article{geo:GSM9822860,
doi = {10.1016/j.cell.2026.07.007},
title = {GSM9822860},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB