10x Xenium
Mouse lung
GSM9032276
bronze Interactive viewer small cell lung carcinoma Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 40889, 31329), (1, 20444, 15664), (1, 10222, 7832), (1, 5111, 3916), (1, 2555, 1958)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (40494, 29589), (20247, 14794), (10123, 7397), (5061, 3698), (2530, 1849)
│ └── 'nucleus_labels': DataTree[yx] (40448, 29543), (20224, 14771), (10112, 7385), (5056, 3692), (2528, 1846)
├── Points
│ └── 'transcripts': DataFrame with shape: (25288606, 11) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (154818, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (154818, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (154818, 2) (2D shapes)
└── Tables
└── 'table': AnnData (154818, 479)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("YQu3tzKpJMOM6d790000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("YQu3tzKpJMOM6d79") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download YQu3tzKpJMOM6d790000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/YQu3tzKpJMOM6d79
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid YQu3tzKpJMOM6d79License: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- lung
- Condition
- small cell lung carcinoma
- Modality
- RNA
- Observations (cells)
- 154,818
- Transcripts
- 25,288,606
- Tier
- bronze
- Size
- 2.7 GB
- Sample ID
- GSM9032276
- License
- NCBI GEO policy
- Published
- Oct 17, 2025
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB