10x Xenium
Human lung
GSM9714910
silver Interactive viewer chronic obstructive pulmonary disease No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 57834, 20195), (1, 28917, 10097), (1, 14458, 5048), (1, 7229, 2524), (1, 3614, 1262)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (57525, 19991), (28762, 9995), (14381, 4997), (7190, 2498), (3595, 1249)
│ └── 'nucleus_labels': DataTree[yx] (57480, 19961), (28740, 9980), (14370, 4990), (7185, 2495), (3592, 1247)
├── Points
│ └── 'transcripts': DataFrame with shape: (22635730, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (184435, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (184435, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (183980, 2) (2D shapes)
└── Tables
└── 'table': AnnData (184435, 387)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("t4uMlHjzM2jTNPDx0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("t4uMlHjzM2jTNPDx") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download t4uMlHjzM2jTNPDx0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/t4uMlHjzM2jTNPDx
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid t4uMlHjzM2jTNPDxLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- lung
- Condition
- chronic obstructive pulmonary disease
- Modality
- RNA
- Observations (cells)
- 184,435
- Transcripts
- 22,635,730
- Tier
- silver
- Size
- 2.5 GB
- Sample ID
- GSM9714910
- License
- NCBI GEO policy
- Published
- Aug 9, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB