10x Xenium
Human lung
GSM9290278
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 40825, 25847), (1, 20412, 12923), (1, 10206, 6461), (1, 5103, 3230), (1, 2551, 1615)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (39647, 25073), (19823, 12536), (9911, 6268), (4955, 3134), (2477, 1567)
│ └── 'nucleus_labels': DataTree[yx] (39601, 25027), (19800, 12513), (9900, 6256), (4950, 3128), (2475, 1564)
├── Points
│ └── 'transcripts': DataFrame with shape: (2233273, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (46291, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (46291, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (46353, 2) (2D shapes)
└── Tables
└── 'table': AnnData (46291, 387)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("MO17EKFlVPzYOSOP0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("MO17EKFlVPzYOSOP") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download MO17EKFlVPzYOSOP0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/MO17EKFlVPzYOSOP
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid MO17EKFlVPzYOSOPLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- lung
- Modality
- RNA
- Observations (cells)
- 46,291
- Transcripts
- 2,233,273
- Tier
- silver
- Size
- 1.1 GB
- Sample ID
- GSM9290278
- License
- NCBI GEO policy
- Published
- Aug 9, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB