10x Xenium
Human lung
GSM9509150
bronze Interactive viewer squamous cell lung carcinoma Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_focus': DataTree[cyx] (1, 71399, 42646), (1, 35699, 21323), (1, 17849, 10661), (1, 8924, 5330), (1, 4462, 2665)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (70844, 41923), (35422, 20961), (17711, 10480), (8855, 5240), (4427, 2620)
│ └── 'nucleus_labels': DataTree[yx] (70724, 41822), (35362, 20911), (17681, 10455), (8840, 5227), (4420, 2613)
├── Points
│ └── 'transcripts': DataFrame with shape: (76438089, 10) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (679289, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (679289, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (679289, 1) (2D shapes)
└── Tables
└── 'table': AnnData (679289, 289)
with coordinate systems:
▸ 'global', with elements:
morphology_focus (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("KPQ2XD1E80axLbEy0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("KPQ2XD1E80axLbEy") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download KPQ2XD1E80axLbEy0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/KPQ2XD1E80axLbEy
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid KPQ2XD1E80axLbEyLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- lung
- Condition
- squamous cell lung carcinoma
- Modality
- RNA
- Observations (cells)
- 679,289
- Transcripts
- 76,438,089
- Tier
- bronze
- Size
- 6.6 GB
- Sample ID
- GSM9509150
- License
- NCBI GEO policy
- Published
- Mar 27, 2026
Cite this dataset
doi.org/10.1038/s41592-026-03089-8 ↗ BibTeX
@article{geo:GSM9509150,
doi = {10.1038/s41592-026-03089-8},
title = {GSM9509150},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB