10x Xenium
Human lung
GSM9714924
silver Interactive viewer chronic obstructive pulmonary disease No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 34130, 22781), (1, 17065, 11390), (1, 8532, 5695), (1, 4266, 2847), (1, 2133, 1423)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (33317, 22011), (16658, 11005), (8329, 5502), (4164, 2751), (2082, 1375)
│ └── 'nucleus_labels': DataTree[yx] (32000, 21791), (16000, 10895), (8000, 5447), (4000, 2723), (2000, 1361)
├── Points
│ └── 'transcripts': DataFrame with shape: (24075510, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (67502, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (67502, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (67263, 2) (2D shapes)
└── Tables
└── 'table': AnnData (67502, 387)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("hTnFN4hAIrvWTF6M0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("hTnFN4hAIrvWTF6M") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download hTnFN4hAIrvWTF6M0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/hTnFN4hAIrvWTF6M
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid hTnFN4hAIrvWTF6MLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- lung
- Condition
- chronic obstructive pulmonary disease
- Modality
- RNA
- Observations (cells)
- 67,502
- Transcripts
- 24,075,510
- Tier
- silver
- Size
- 1.5 GB
- Sample ID
- GSM9714924
- License
- NCBI GEO policy
- Published
- Aug 9, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB