10x Xenium
Mouse lung
GSM9808288
silver Interactive viewer lung adenocarcinoma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 71447, 51173), (1, 35723, 25586), (1, 17861, 12793), (1, 8930, 6396), (1, 4465, 3198)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (71061, 51048), (35530, 25524), (17765, 12762), (8882, 6381), (4441, 3190)
│ └── 'nucleus_labels': DataTree[yx] (70866, 50105), (35433, 25052), (17716, 12526), (8858, 6263), (4429, 3131)
├── Points
│ └── 'transcripts': DataFrame with shape: (130019496, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (306612, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (306612, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (306673, 2) (2D shapes)
└── Tables
└── 'table': AnnData (306612, 5006)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("9cxw5DAMznNwLCtD0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("9cxw5DAMznNwLCtD") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download 9cxw5DAMznNwLCtD0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/9cxw5DAMznNwLCtD
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 9cxw5DAMznNwLCtDLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- lung
- Condition
- lung adenocarcinoma
- Modality
- RNA
- Observations (cells)
- 306,612
- Transcripts
- 130,019,496
- Tier
- silver
- Size
- 6.7 GB
- Sample ID
- GSM9808288
- License
- NCBI GEO policy
- Published
- Jul 21, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB