10x Xenium
Human kidney
GSM9844158
silver Interactive viewer acute tubulointerstitial nephritis No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 6955, 19968), (1, 3477, 9984), (1, 1738, 4992), (1, 869, 2496), (1, 434, 1248)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (6929, 19812), (3464, 9906), (1732, 4953), (866, 2476), (433, 1238)
│ └── 'nucleus_labels': DataTree[yx] (6865, 19767), (3432, 9883), (1716, 4941), (858, 2470), (429, 1235)
├── Points
│ └── 'transcripts': DataFrame with shape: (2844771, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (13860, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (13860, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (13853, 2) (2D shapes)
└── Tables
└── 'table': AnnData (13860, 5101)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("VuiDeCXkuqd9M6B80000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("VuiDeCXkuqd9M6B8") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download VuiDeCXkuqd9M6B80000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/VuiDeCXkuqd9M6B8
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid VuiDeCXkuqd9M6B8License: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- kidney
- Condition
- acute tubulointerstitial nephritis
- Modality
- RNA
- Observations (cells)
- 13,860
- Transcripts
- 2,844,771
- Tier
- silver
- Size
- 231 MB
- Sample ID
- GSM9844158
- License
- NCBI GEO policy
- Published
- Aug 18, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB