10x Xenium
Mouse hypothalamus
GSM9494076
silver Interactive viewer autism spectrum disorder No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 20544, 48358), (1, 10272, 24179), (1, 5136, 12089), (1, 2568, 6044), (1, 1284, 3022)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (17814, 46984), (8907, 23492), (4453, 11746), (2226, 5873), (1113, 2936)
│ └── 'nucleus_labels': DataTree[yx] (17023, 46942), (8511, 23471), (4255, 11735), (2127, 5867), (1063, 2933)
├── Points
│ └── 'transcripts': DataFrame with shape: (87716559, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (37269, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (37269, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (37169, 2) (2D shapes)
└── Tables
└── 'table': AnnData (37269, 5056)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("f5Pdzmwh3N3WNxN80000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("f5Pdzmwh3N3WNxN8") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download f5Pdzmwh3N3WNxN80000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/f5Pdzmwh3N3WNxN8
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid f5Pdzmwh3N3WNxN8License: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- hypothalamus
- Condition
- autism spectrum disorder
- Modality
- RNA
- Observations (cells)
- 37,269
- Transcripts
- 87,716,559
- Tier
- silver
- Size
- 2.4 GB
- Sample ID
- GSM9494076
- License
- NCBI GEO policy
- Published
- Mar 2, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB