10x Xenium
Human hippocampal formation
GSM9822866
bronze Interactive viewer Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 30691, 34140), (1, 15345, 17070), (1, 7672, 8535), (1, 3836, 4267), (1, 1918, 2133)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (28957, 31572), (14478, 15786), (7239, 7893), (3619, 3946), (1809, 1973)
│ └── 'nucleus_labels': DataTree[yx] (28952, 31563), (14476, 15781), (7238, 7890), (3619, 3945), (1809, 1972)
├── Points
│ └── 'transcripts': DataFrame with shape: (10148073, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (26091, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (26091, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (25617, 2) (2D shapes)
└── Tables
└── 'table': AnnData (26091, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("fHmcNvT9ESSqLFOf0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("fHmcNvT9ESSqLFOf") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download fHmcNvT9ESSqLFOf0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/fHmcNvT9ESSqLFOf
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid fHmcNvT9ESSqLFOfLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- hippocampal formation
- Modality
- RNA
- Observations (cells)
- 26,091
- Transcripts
- 10,148,073
- Tier
- bronze
- Size
- 1.2 GB
- Sample ID
- GSM9822866
- License
- NCBI GEO policy
- Published
- Jul 31, 2026
Cite this dataset
doi.org/10.1016/j.cell.2026.07.007 ↗ BibTeX
@article{geo:GSM9822866,
doi = {10.1016/j.cell.2026.07.007},
title = {GSM9822866},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB