10x Xenium
Human hippocampal formation
GSM9822864
bronze Interactive viewer Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 37465, 34142), (1, 18732, 17071), (1, 9366, 8535), (1, 4683, 4267), (1, 2341, 2133)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (36105, 33466), (18052, 16733), (9026, 8366), (4513, 4183), (2256, 2091)
│ └── 'nucleus_labels': DataTree[yx] (36068, 33421), (18034, 16710), (9017, 8355), (4508, 4177), (2254, 2088)
├── Points
│ └── 'transcripts': DataFrame with shape: (10890733, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (29499, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (29499, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (29337, 2) (2D shapes)
└── Tables
└── 'table': AnnData (29499, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("dILoyUtA0T9slmkF0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("dILoyUtA0T9slmkF") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download dILoyUtA0T9slmkF0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/dILoyUtA0T9slmkF
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid dILoyUtA0T9slmkFLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- hippocampal formation
- Modality
- RNA
- Observations (cells)
- 29,499
- Transcripts
- 10,890,733
- Tier
- bronze
- Size
- 1.4 GB
- Sample ID
- GSM9822864
- License
- NCBI GEO policy
- Published
- Jul 31, 2026
Cite this dataset
doi.org/10.1016/j.cell.2026.07.007 ↗ BibTeX
@article{geo:GSM9822864,
doi = {10.1016/j.cell.2026.07.007},
title = {GSM9822864},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB