10x Xenium
Human heart
GSM9526126
bronze Interactive viewer cardiac sarcoidosis Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 20503, 25667), (1, 10251, 12833), (1, 5125, 6416), (1, 2562, 3208), (1, 1281, 1604)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (20501, 25620), (10250, 12810), (5125, 6405), (2562, 3202), (1281, 1601)
│ └── 'nucleus_labels': DataTree[yx] (20463, 25574), (10231, 12787), (5115, 6393), (2557, 3196), (1278, 1598)
├── Points
│ └── 'transcripts': DataFrame with shape: (595934, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (42949, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (42949, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (42949, 2) (2D shapes)
└── Tables
└── 'table': AnnData (42949, 477)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("QQ48oLfsZWKDaCvU0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("QQ48oLfsZWKDaCvU") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download QQ48oLfsZWKDaCvU0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/QQ48oLfsZWKDaCvU
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid QQ48oLfsZWKDaCvULicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- heart
- Condition
- cardiac sarcoidosis
- Modality
- RNA
- Observations (cells)
- 42,949
- Transcripts
- 595,934
- Tier
- bronze
- Size
- 556 MB
- Sample ID
- GSM9526126
- License
- NCBI GEO policy
- Published
- May 25, 2026
Cite this dataset
doi.org/10.1161/CIRCULATIONAHA.126.079304 ↗ BibTeX
@article{geo:GSM9526126,
doi = {10.1161/CIRCULATIONAHA.126.079304},
title = {GSM9526126},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB