10x Xenium
Human fallopian tube
GSM9981859
silver Interactive viewer ovarian cancer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 64677, 48406), (1, 32338, 24203), (1, 16169, 12101), (1, 8084, 6050), (1, 4042, 3025)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (64552, 47963), (32276, 23981), (16138, 11990), (8069, 5995), (4034, 2997)
│ └── 'nucleus_labels': DataTree[yx] (64524, 45016), (32262, 22508), (16131, 11254), (8065, 5627), (4032, 2813)
├── Points
│ └── 'transcripts': DataFrame with shape: (293599144, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (716027, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (716027, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (719555, 2) (2D shapes)
└── Tables
└── 'table': AnnData (716027, 480)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("vVbRiPrwOmffCqU50000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("vVbRiPrwOmffCqU5") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download vVbRiPrwOmffCqU50000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/vVbRiPrwOmffCqU5
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid vVbRiPrwOmffCqU5License: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- fallopian tube
- Condition
- ovarian cancer
- Modality
- RNA
- Observations (cells)
- 716,027
- Transcripts
- 293,599,144
- Tier
- silver
- Size
- 10.8 GB
- Sample ID
- GSM9981859
- License
- NCBI GEO policy
- Published
- Aug 27, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB