10x Xenium
Human dorsolateral prefrontal cortex
GSM9223481
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 34096, 51120), (1, 17048, 25560), (1, 8524, 12780), (1, 4262, 6390), (1, 2131, 3195)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (32365, 50108), (16182, 25054), (8091, 12527), (4045, 6263), (2022, 3131)
│ └── 'nucleus_labels': DataTree[yx] (32318, 50072), (16159, 25036), (8079, 12518), (4039, 6259), (2019, 3129)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (61932, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (61932, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (61932, 2) (2D shapes)
└── Tables
└── 'table': AnnData (61932, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("upJ0jaKF4o1JH4Hd0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("upJ0jaKF4o1JH4Hd") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download upJ0jaKF4o1JH4Hd0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/upJ0jaKF4o1JH4Hd
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid upJ0jaKF4o1JH4HdLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- dorsolateral prefrontal cortex
- Modality
- RNA
- Observations (cells)
- 61,932
- Tier
- silver
- Size
- 2.3 GB
- Sample ID
- GSM9223481
- License
- NCBI GEO policy
- Published
- Feb 16, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB