10x Xenium
Human dorsolateral prefrontal cortex
GSM9223491
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 34112, 45490), (1, 17056, 22745), (1, 8528, 11372), (1, 4264, 5686), (1, 2132, 2843)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (33077, 44375), (16538, 22187), (8269, 11093), (4134, 5546), (2067, 2773)
│ └── 'nucleus_labels': DataTree[yx] (33031, 44329), (16515, 22164), (8257, 11082), (4128, 5541), (2064, 2770)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (53201, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (53201, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (53201, 2) (2D shapes)
└── Tables
└── 'table': AnnData (53201, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("OE8YtRSIoeqBgV6n0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("OE8YtRSIoeqBgV6n") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download OE8YtRSIoeqBgV6n0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/OE8YtRSIoeqBgV6n
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid OE8YtRSIoeqBgV6nLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- dorsolateral prefrontal cortex
- Modality
- RNA
- Observations (cells)
- 53,201
- Tier
- silver
- Size
- 1.9 GB
- Sample ID
- GSM9223491
- License
- NCBI GEO policy
- Published
- Feb 16, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB