10x Xenium
Human dorsolateral prefrontal cortex
GSM9223490
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 30711, 42664), (1, 15355, 21332), (1, 7677, 10666), (1, 3838, 5333), (1, 1919, 2666)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (29968, 42359), (14984, 21179), (7492, 10589), (3746, 5294), (1873, 2647)
│ └── 'nucleus_labels': DataTree[yx] (29930, 42314), (14965, 21157), (7482, 10578), (3741, 5289), (1870, 2644)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (47384, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (47384, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (47384, 2) (2D shapes)
└── Tables
└── 'table': AnnData (47384, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("jYIwmKA5DuYlmLwh0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("jYIwmKA5DuYlmLwh") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download jYIwmKA5DuYlmLwh0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/jYIwmKA5DuYlmLwh
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid jYIwmKA5DuYlmLwhLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- dorsolateral prefrontal cortex
- Modality
- RNA
- Observations (cells)
- 47,384
- Tier
- silver
- Size
- 1.7 GB
- Sample ID
- GSM9223490
- License
- NCBI GEO policy
- Published
- Feb 16, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB