10x Xenium
Human dorsolateral prefrontal cortex
GSM9223486
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 37489, 48308), (1, 18744, 24154), (1, 9372, 12077), (1, 4686, 6038), (1, 2343, 3019)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (35087, 46214), (17543, 23107), (8771, 11553), (4385, 5776), (2192, 2888)
│ └── 'nucleus_labels': DataTree[yx] (35040, 46179), (17520, 23089), (8760, 11544), (4380, 5772), (2190, 2886)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (46286, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (46286, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (46286, 2) (2D shapes)
└── Tables
└── 'table': AnnData (46286, 300)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("512ZyfwlNpVQ57Jd0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("512ZyfwlNpVQ57Jd") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download 512ZyfwlNpVQ57Jd0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/512ZyfwlNpVQ57Jd
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 512ZyfwlNpVQ57JdLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- dorsolateral prefrontal cortex
- Modality
- RNA
- Observations (cells)
- 46,286
- Tier
- silver
- Size
- 2.0 GB
- Sample ID
- GSM9223486
- License
- NCBI GEO policy
- Published
- Feb 16, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB