10x Xenium
Mouse brain
GSM9632804
bronze Interactive viewer Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 95220, 53924), (1, 47610, 26962), (1, 23805, 13481), (1, 11902, 6740), (1, 5951, 3370)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (94680, 53330), (47340, 26665), (23670, 13332), (11835, 6666), (5917, 3333)
│ └── 'nucleus_labels': DataTree[yx] (93096, 53143), (46548, 26571), (23274, 13285), (11637, 6642), (5818, 3321)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (628934, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (628934, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (629679, 2) (2D shapes)
└── Tables
└── 'table': AnnData (628934, 5106)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("K82PZBilMkhAFoPw0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("K82PZBilMkhAFoPw") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download K82PZBilMkhAFoPw0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/K82PZBilMkhAFoPw
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid K82PZBilMkhAFoPwLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- brain
- Modality
- RNA
- Observations (cells)
- 628,934
- Tier
- bronze
- Size
- 8.4 GB
- Sample ID
- GSM9632804
- License
- NCBI GEO policy
- Published
- Mar 31, 2026
Cite this dataset
doi.org/10.1007/s10456-025-10019-3 ↗ BibTeX
@article{geo:GSM9632804,
doi = {10.1007/s10456-025-10019-3},
title = {GSM9632804},
year = {2025}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB