10x Xenium
Human brain
GSM9572843
bronze Interactive viewer glioblastoma Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 71393, 51159), (1, 35696, 25579), (1, 17848, 12789), (1, 8924, 6394), (1, 4462, 3197)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (67513, 49677), (33756, 24838), (16878, 12419), (8439, 6209), (4219, 3104)
│ └── 'nucleus_labels': DataTree[yx] (67468, 49631), (33734, 24815), (16867, 12407), (8433, 6203), (4216, 3101)
├── Points
│ └── 'transcripts': DataFrame with shape: (187393593, 11) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (851509, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (851509, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (851509, 2) (2D shapes)
└── Tables
└── 'table': AnnData (851509, 366)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("eCWlDrQGSwdVRmmN0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("eCWlDrQGSwdVRmmN") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download eCWlDrQGSwdVRmmN0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/eCWlDrQGSwdVRmmN
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid eCWlDrQGSwdVRmmNLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- brain
- Condition
- glioblastoma
- Modality
- RNA
- Observations (cells)
- 851,509
- Transcripts
- 187,393,593
- Tier
- bronze
- Size
- 11.5 GB
- Sample ID
- GSM9572843
- License
- NCBI GEO policy
- Published
- Mar 17, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB