10x Xenium
Mouse brain
GSM9852127
silver Interactive viewer No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 30702, 42637), (1, 15351, 21318), (1, 7675, 10659), (1, 3837, 5329), (1, 1918, 2664)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (30350, 42259), (15175, 21129), (7587, 10564), (3793, 5282), (1896, 2641)
│ └── 'nucleus_labels': DataTree[yx] (30298, 41691), (15149, 20845), (7574, 10422), (3787, 5211), (1893, 2605)
├── Points
│ └── 'transcripts': DataFrame with shape: (86535587, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (108738, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (108738, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (109555, 2) (2D shapes)
└── Tables
└── 'table': AnnData (108738, 347)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("0dTXlKZ67T6zR6GE0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("0dTXlKZ67T6zR6GE") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download 0dTXlKZ67T6zR6GE0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/0dTXlKZ67T6zR6GE
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 0dTXlKZ67T6zR6GELicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- mouse
- Tissue
- brain
- Modality
- RNA
- Observations (cells)
- 108,738
- Transcripts
- 86,535,587
- Tier
- silver
- Size
- 3.6 GB
- Sample ID
- GSM9852127
- License
- NCBI GEO policy
- Published
- Jul 30, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB