10x Xenium
Human bone marrow
GSM10001172
bronze Interactive viewer plasma cell myeloma Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 98484, 51123), (1, 49242, 25561), (1, 24621, 12780), (1, 12310, 6390), (1, 6155, 3195)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (97711, 50915), (48855, 25457), (24427, 12728), (12213, 6364), (6106, 3182)
│ └── 'nucleus_labels': DataTree[yx] (97664, 50876), (48832, 25438), (24416, 12719), (12208, 6359), (6104, 3179)
├── Points
│ └── 'transcripts': DataFrame with shape: (32112329, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (781716, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (781716, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (781716, 2) (2D shapes)
└── Tables
└── 'table': AnnData (781716, 480)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("fH8J0wKO9DA8tGGN0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("fH8J0wKO9DA8tGGN") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download fH8J0wKO9DA8tGGN0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/fH8J0wKO9DA8tGGN
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid fH8J0wKO9DA8tGGNLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- bone marrow
- Condition
- plasma cell myeloma
- Modality
- RNA
- Observations (cells)
- 781,716
- Transcripts
- 32,112,329
- Tier
- bronze
- Size
- 6.2 GB
- Sample ID
- GSM10001172
- License
- NCBI GEO policy
- Published
- Aug 28, 2026
Cite this dataset
doi.org/10.1158/2643-3230.BCD-26-0080 ↗ BibTeX
@article{geo:GSM10001172,
doi = {10.1158/2643-3230.BCD-26-0080},
title = {GSM10001172},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB