10x Xenium
Human bone marrow
GSM9444342
silver Interactive viewer plasma cell myeloma No linked publication
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 20440, 39819), (1, 10220, 19909), (1, 5110, 9954), (1, 2555, 4977), (1, 1277, 2488)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (20342, 38588), (10171, 19294), (5085, 9647), (2542, 4823), (1271, 2411)
│ └── 'nucleus_labels': DataTree[yx] (20316, 38586), (10158, 19293), (5079, 9646), (2539, 4823), (1269, 2411)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (79796, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (79796, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (80795, 2) (2D shapes)
└── Tables
└── 'table': AnnData (79796, 477)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("cQsfe4dyfa4dlPbL0000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("cQsfe4dyfa4dlPbL") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download cQsfe4dyfa4dlPbL0000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/cQsfe4dyfa4dlPbL
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid cQsfe4dyfa4dlPbLLicense: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- bone marrow
- Condition
- plasma cell myeloma
- Modality
- RNA
- Observations (cells)
- 79,796
- Tier
- silver
- Size
- 948 MB
- Sample ID
- GSM9444342
- License
- NCBI GEO policy
- Published
- Oct 3, 2026
Cite this dataset
No linked publication found — please cite the data source: NCBI GEO ↗.
Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB