10x Xenium
Human bone marrow
GSM10001175
bronze Interactive viewer plasma cell myeloma Provisional
print(sdata)
SpatialData object
├── Images
│ └── 'morphology_mip': DataTree[cyx] (1, 101891, 51101), (1, 50945, 25550), (1, 25472, 12775), (1, 12736, 6387), (1, 6368, 3193)
├── Labels
│ ├── 'cell_labels': DataTree[yx] (101704, 50852), (50852, 25426), (25426, 12713), (12713, 6356), (6356, 3178)
│ └── 'nucleus_labels': DataTree[yx] (101658, 50805), (50829, 25402), (25414, 12701), (12707, 6350), (6353, 3175)
├── Points
│ └── 'transcripts': DataFrame with shape: (13757988, 13) (3D points)
├── Shapes
│ ├── 'cell_boundaries': GeoDataFrame shape: (152039, 1) (2D shapes)
│ ├── 'cell_circles': GeoDataFrame shape: (152039, 2) (2D shapes)
│ └── 'nucleus_boundaries': GeoDataFrame shape: (152039, 2) (2D shapes)
└── Tables
└── 'table': AnnData (152039, 480)
with coordinate systems:
▸ 'global', with elements:
morphology_mip (Images), cell_labels (Labels), nucleus_labels (Labels), transcripts (Points), cell_boundaries (Shapes), cell_circles (Shapes), nucleus_boundaries (Shapes) Python · sddb client
from sddb import Catalog
ds = Catalog().dataset("0uqTfJAcPG9jraB10000")
ds.elements() # inspect without downloading
sdata = ds.to_sdata() # cached locally, reused
print(sdata) Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
artifact = db.Artifact.get("0uqTfJAcPG9jraB1") # stem uid: Lamin resolves it to the latest version
sdata = artifact.load() # cache, then load into memory
group = artifact.open() # stream without downloading
path = artifact.cache() # sync into the local cache, returns the path Shell
# sddb client: download the .zarr into data/
sddb-cli download 0uqTfJAcPG9jraB10000 --dest data/
# or lamin: cache the dataset and print its local path
lamin load https://lamin.ai/scverse/spatialdata-db/artifact/0uqTfJAcPG9jraB1
# or connect once, then load by uid
lamin connect scverse/spatialdata-db
lamin load artifact --uid 0uqTfJAcPG9jraB1License: NCBI GEO policy
Metadata
- Technology
- 10x Xenium
- Organism
- human
- Tissue
- bone marrow
- Condition
- plasma cell myeloma
- Modality
- RNA
- Observations (cells)
- 152,039
- Transcripts
- 13,757,988
- Tier
- bronze
- Size
- 4.0 GB
- Sample ID
- GSM10001175
- License
- NCBI GEO policy
- Published
- Aug 28, 2026
Cite this dataset
doi.org/10.1158/2643-3230.BCD-26-0080 ↗ BibTeX
@article{geo:GSM10001175,
doi = {10.1158/2643-3230.BCD-26-0080},
title = {GSM10001175},
year = {2026}
}Source: NCBI GEO ↗ · License: NCBI GEO policy ↗ · Reprocessed to SpatialData by SpatialData-DB