Collections / zenodo-12595241

zenodo-12595241

Datasets10
Size~2.1 GB
AssayStereo-seq
Samplemultiple · thymus
KindPublication
Flag a data issue
10.5281/zenodo.12595241 ↗
Download the whole collection
Python · sddb client 
from sddb import Catalog

cohort = Catalog().collection("zenodo-12595241")
cohort.members        # the 10 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Install (Python 3.12+) Docs →
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="zenodo-12595241")
coll.ordered_artifacts.to_dataframe()   # the 10 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Install (Python 3.12+) Docs →
Shell 
# sddb client: download every member .zarr into data/
sddb-cli download --collection zenodo-12595241 --dest data/
Install (Python 3.12+) Docs →

Licenses: 10 CC BY 4.0

Member datasets · 10
Open in Vitessce
Stereo-seq
Mouse thymus
12595241:B01809E3
mouse thymus 45.8 MB 43,694 obs bronze
TechnologyStereo-seq
Organismmouse
Tissuethymus
Size45.8 MB
Obs43,694
bronze Open in Vitessce
Open in Vitessce
Stereo-seq
Human thymus
12595241:A03994E6
human thymus 393 MB 111,137 obs bronze
TechnologyStereo-seq
Organismhuman
Tissuethymus
Size393 MB
Obs111,137
bronze Open in Vitessce
Open in Vitessce
Stereo-seq
Human thymus
12595241:C04297D1
human thymus 331 MB 83,715 obs bronze
TechnologyStereo-seq
Organismhuman
Tissuethymus
Size331 MB
Obs83,715
bronze Open in Vitessce
Open in Vitessce
Stereo-seq
Mouse thymus
12595241:SS200001298TL_F5
mouse thymus 6.6 MB 66,290 obs bronze
TechnologyStereo-seq
Organismmouse
Tissuethymus
Size6.6 MB
Obs66,290
bronze Open in Vitessce
Open in Vitessce
Stereo-seq
Human thymus
12595241:A01785D6
human thymus 63.1 MB 27,078 obs bronze
TechnologyStereo-seq
Organismhuman
Tissuethymus
Size63.1 MB
Obs27,078
bronze Open in Vitessce
Open in Vitessce
Stereo-seq
Human thymus
12595241:B01809D6
human thymus 132 MB 45,353 obs bronze
TechnologyStereo-seq
Organismhuman
Tissuethymus
Size132 MB
Obs45,353
bronze Open in Vitessce
Open in Vitessce
Stereo-seq
Human thymus
12595241:A01785C6
human thymus 156 MB 68,140 obs bronze
TechnologyStereo-seq
Organismhuman
Tissuethymus
Size156 MB
Obs68,140
bronze Open in Vitessce
Open in Vitessce
Stereo-seq
Human thymus
12595241:C02931A1B3
human thymus 391 MB 312,774 obs bronze
TechnologyStereo-seq
Organismhuman
Tissuethymus
Size391 MB
Obs312,774
bronze Open in Vitessce
Open in Vitessce
Stereo-seq
Human thymus
12595241:D02672A5
human thymus 215 MB 69,780 obs bronze
TechnologyStereo-seq
Organismhuman
Tissuethymus
Size215 MB
Obs69,780
bronze Open in Vitessce
Open in Vitessce
Stereo-seq
Human thymus
12595241:C02935F5
human thymus 333 MB 110,790 obs bronze
TechnologyStereo-seq
Organismhuman
Tissuethymus
Size333 MB
Obs110,790
bronze Open in Vitessce

Cite this collection

No linked publication found — please cite the data source.