Collections / mendeley-wxcbdvrh2t

mendeley-wxcbdvrh2t

Datasets6
Size~181 MB
TechnologyVisium
Samplemouse · claustrum of brain
KindPublication
Flag a data issue
10.17632/wxcbdvrh2t.1 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("mendeley-wxcbdvrh2t")
cohort.members        # the 6 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="mendeley-wxcbdvrh2t")
coll.ordered_artifacts.to_dataframe()   # the 6 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection mendeley-wxcbdvrh2t --dest data/

Licenses: 6 CC BY 4.0

Open in Vitessce
Visium
Mouse claustrum of brain
Claustrum/dorsal Endopiriform cortex complex cell identity is determined 1 by Nurr1 and regulates hallucinogenic-like states. (V12M09-008_A1)
mouse claustrum of brain 30.4 MB 2,106 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissueclaustrum of brain
Size30.4 MB
Spots2,106
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse claustrum of brain
Claustrum/dorsal Endopiriform cortex complex cell identity is determined 1 by Nurr1 and regulates hallucinogenic-like states. (V12M09-007_A1)
mouse claustrum of brain 24.5 MB 1,820 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissueclaustrum of brain
Size24.5 MB
Spots1,820
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse claustrum of brain
Claustrum/dorsal Endopiriform cortex complex cell identity is determined 1 by Nurr1 and regulates hallucinogenic-like states. (V12M09-008_C1)
mouse claustrum of brain 34.1 MB 2,041 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissueclaustrum of brain
Size34.1 MB
Spots2,041
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse claustrum of brain
Claustrum/dorsal Endopiriform cortex complex cell identity is determined 1 by Nurr1 and regulates hallucinogenic-like states. (V12M09-007_D1)
mouse claustrum of brain 26.5 MB 1,835 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissueclaustrum of brain
Size26.5 MB
Spots1,835
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse claustrum of brain
Claustrum/dorsal Endopiriform cortex complex cell identity is determined 1 by Nurr1 and regulates hallucinogenic-like states. (V12M09-008_D1)
mouse claustrum of brain 36.9 MB 2,157 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissueclaustrum of brain
Size36.9 MB
Spots2,157
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse claustrum of brain
Claustrum/dorsal Endopiriform cortex complex cell identity is determined 1 by Nurr1 and regulates hallucinogenic-like states. (V12M09-008_B1)
mouse claustrum of brain 29.0 MB 1,863 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissueclaustrum of brain
Size29.0 MB
Spots1,863
bronze Under review H&E Open in Vitessce

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