Collections / mendeley-kx6b69n3cb

mendeley-kx6b69n3cb

Datasets13
Size~427 MB
TechnologyCosMx SMI
Samplehuman · pancreas
KindPublication
Flag a data issue
10.17632/kx6b69n3cb.1 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("mendeley-kx6b69n3cb")
cohort.members        # the 13 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="mendeley-kx6b69n3cb")
coll.ordered_artifacts.to_dataframe()   # the 13 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection mendeley-kx6b69n3cb --dest data/

Licenses: 13 CC BY 4.0

Open in Vitessce
CosMx SMI
Human pancreas
PDAC-SMI and co-culture dataset (T4-a)
human pancreas pancreatic ductal adenocarcinoma 41.6 MB 56,312 cells 990 genes bronze Under review
TechnologyCosMx SMI
Organismhuman
Tissuepancreas
Conditionpancreatic ductal adenocarcinoma
Size41.6 MB
Cells56,312
Genes990
bronze Under review Open in Vitessce
Open in Vitessce
CosMx SMI
Human pancreas
PDAC-SMI and co-culture dataset (U5-a)
human pancreas pancreatic ductal adenocarcinoma 76.4 MB 75,975 cells 990 genes bronze Under review
TechnologyCosMx SMI
Organismhuman
Tissuepancreas
Conditionpancreatic ductal adenocarcinoma
Size76.4 MB
Cells75,975
Genes990
bronze Under review Open in Vitessce
Open in Vitessce
CosMx SMI
Human pancreas
PDAC-SMI and co-culture dataset (U1-b)
human pancreas pancreatic ductal adenocarcinoma 31.7 MB 75,640 cells 960 genes bronze Under review
TechnologyCosMx SMI
Organismhuman
Tissuepancreas
Conditionpancreatic ductal adenocarcinoma
Size31.7 MB
Cells75,640
Genes960
bronze Under review Open in Vitessce
Open in Vitessce
CosMx SMI
Human pancreas
PDAC-SMI and co-culture dataset (T1-b)
human pancreas pancreatic ductal adenocarcinoma 18.1 MB 34,239 cells 960 genes bronze Under review
TechnologyCosMx SMI
Organismhuman
Tissuepancreas
Conditionpancreatic ductal adenocarcinoma
Size18.1 MB
Cells34,239
Genes960
bronze Under review Open in Vitessce
Open in Vitessce
CosMx SMI
Human pancreas
PDAC-SMI and co-culture dataset (T4-b)
human pancreas pancreatic ductal adenocarcinoma 27.9 MB 46,969 cells 960 genes bronze Under review
TechnologyCosMx SMI
Organismhuman
Tissuepancreas
Conditionpancreatic ductal adenocarcinoma
Size27.9 MB
Cells46,969
Genes960
bronze Under review Open in Vitessce
Open in Vitessce
CosMx SMI
Human pancreas
PDAC-SMI and co-culture dataset (U2-b)
human pancreas pancreatic ductal adenocarcinoma 29.6 MB 60,873 cells 960 genes bronze Under review
TechnologyCosMx SMI
Organismhuman
Tissuepancreas
Conditionpancreatic ductal adenocarcinoma
Size29.6 MB
Cells60,873
Genes960
bronze Under review Open in Vitessce
Open in Vitessce
CosMx SMI
Human pancreas
PDAC-SMI and co-culture dataset (T2-b)
human pancreas pancreatic ductal adenocarcinoma 21.1 MB 50,976 cells 960 genes bronze Under review
TechnologyCosMx SMI
Organismhuman
Tissuepancreas
Conditionpancreatic ductal adenocarcinoma
Size21.1 MB
Cells50,976
Genes960
bronze Under review Open in Vitessce
Open in Vitessce
CosMx SMI
Human pancreas
PDAC-SMI and co-culture dataset (U3-b)
human pancreas pancreatic ductal adenocarcinoma 32.5 MB 70,451 cells 960 genes bronze Under review
TechnologyCosMx SMI
Organismhuman
Tissuepancreas
Conditionpancreatic ductal adenocarcinoma
Size32.5 MB
Cells70,451
Genes960
bronze Under review Open in Vitessce
Open in Vitessce
CosMx SMI
Human pancreas
PDAC-SMI and co-culture dataset (U7-a)
human pancreas pancreatic ductal adenocarcinoma 45.3 MB 93,546 cells 990 genes bronze Under review
TechnologyCosMx SMI
Organismhuman
Tissuepancreas
Conditionpancreatic ductal adenocarcinoma
Size45.3 MB
Cells93,546
Genes990
bronze Under review Open in Vitessce
Open in Vitessce
CosMx SMI
Human pancreas
PDAC-SMI and co-culture dataset (T5-a)
human pancreas pancreatic ductal adenocarcinoma 27.3 MB 46,770 cells 990 genes bronze Under review
TechnologyCosMx SMI
Organismhuman
Tissuepancreas
Conditionpancreatic ductal adenocarcinoma
Size27.3 MB
Cells46,770
Genes990
bronze Under review Open in Vitessce
Open in Vitessce
CosMx SMI
Human pancreas
PDAC-SMI and co-culture dataset (U4-b)
human pancreas pancreatic ductal adenocarcinoma 45.1 MB 67,767 cells 960 genes bronze Under review
TechnologyCosMx SMI
Organismhuman
Tissuepancreas
Conditionpancreatic ductal adenocarcinoma
Size45.1 MB
Cells67,767
Genes960
bronze Under review Open in Vitessce
Open in Vitessce
CosMx SMI
Human pancreas
PDAC-SMI and co-culture dataset (T3-b)
human pancreas pancreatic ductal adenocarcinoma 19.3 MB 36,480 cells 960 genes bronze Under review
TechnologyCosMx SMI
Organismhuman
Tissuepancreas
Conditionpancreatic ductal adenocarcinoma
Size19.3 MB
Cells36,480
Genes960
bronze Under review Open in Vitessce
Open in Vitessce
CosMx SMI
Human pancreas
PDAC-SMI and co-culture dataset (T6-b)
human pancreas pancreatic ductal adenocarcinoma 11.4 MB 26,211 cells 960 genes bronze Under review
TechnologyCosMx SMI
Organismhuman
Tissuepancreas
Conditionpancreatic ductal adenocarcinoma
Size11.4 MB
Cells26,211
Genes960
bronze Under review Open in Vitessce

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No linked publication found — please cite the data source.