Collections / mendeley-fjxrcbh672

mendeley-fjxrcbh672

Datasets12
Size~472 MB
TechnologyVisium
Samplemouse · brain
KindPublication
Flag a data issue
10.17632/fjxrcbh672.1 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("mendeley-fjxrcbh672")
cohort.members        # the 12 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="mendeley-fjxrcbh672")
coll.ordered_artifacts.to_dataframe()   # the 12 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection mendeley-fjxrcbh672 --dest data/

Licenses: 12 CC BY 4.0

Open in Vitessce
Visium
Mouse brain
NASA RR-3 Brain Dataset (Sample_158_B1)
mouse brain 23.1 MB 2,221 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size23.1 MB
Spots2,221
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NASA RR-3 Brain Dataset (Sample_159_A1)
mouse brain 56.8 MB 2,894 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size56.8 MB
Spots2,894
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NASA RR-3 Brain Dataset (Sample_159_D1)
mouse brain 43.5 MB 2,435 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size43.5 MB
Spots2,435
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NASA RR-3 Brain Dataset (Sample_159_C1)
mouse brain 55.3 MB 2,655 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size55.3 MB
Spots2,655
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NASA RR-3 Brain Dataset (Sample_158_C1)
mouse brain 68.9 MB 3,171 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size68.9 MB
Spots3,171
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NASA RR-3 Brain Dataset (Sample_304_A1)
mouse brain 29.9 MB 2,313 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size29.9 MB
Spots2,313
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NASA RR-3 Brain Dataset (Sample_158_D1)
mouse brain 65.0 MB 3,122 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size65.0 MB
Spots3,122
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NASA RR-3 Brain Dataset (Sample_304_D1)
mouse brain 19.0 MB 1,466 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size19.0 MB
Spots1,466
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NASA RR-3 Brain Dataset (Sample_158_A1)
mouse brain 15.5 MB 2,470 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size15.5 MB
Spots2,470
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NASA RR-3 Brain Dataset (Sample_304_B1)
mouse brain 30.6 MB 2,456 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size30.6 MB
Spots2,456
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NASA RR-3 Brain Dataset (Sample_159_B1)
mouse brain 43.9 MB 3,335 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size43.9 MB
Spots3,335
bronze Under review H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NASA RR-3 Brain Dataset (Sample_304_C1)
mouse brain 20.2 MB 1,301 spots bronze Under review H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size20.2 MB
Spots1,301
bronze Under review H&E Open in Vitessce

Cite this collection

No linked publication found — please cite the data source.