# SpatialData-DB collections, shard e
Generated from catalog release catalog-2026-11-01. Each collection has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.
## Single-cell and spatial transcriptomics unveil myeloid-lymphoid cross talk and the dermal immune niche underlying palmoplantar pustulosis.
- Page: /collections/geo-gse299051-palmoplantar-pustulosis/
- Kind: publication
- Datasets: 2
- Reference: 10.1016/j.jaci.2026.01.028
- Design: Spatial sequencing libraries were generated using the Visium HD Human Transcriptome Kit (10x Genomics, 1000675) according to the manufacturer’s instructions at Macrogen Inc. (Seoul, Korea). FFPE tissue blocks with DV200 values greater than 30% were selected for library preparation, and 5 μm sections were used.
- Members: [visium-hd-skin-of-body-i0cmgn1fyoz93ubu0000](/datasets/md/b8.md#visium-hd-skin-of-body-i0cmgn1fyoz93ubu0000), [visium-hd-skin-of-body-cspslmuinb8omplh0000](/datasets/md/77.md#visium-hd-skin-of-body-cspslmuinb8omplh0000)
## Atlas of the aging mouse brain reveals white matter as vulnerable foci.
- Page: /collections/doi-10-1016-j-cell-2023-07-027/
- Kind: comparison
- Datasets: 6
- Reference: 10.1016/j.cell.2023.07.027
- Members: [visium-spatial-gene-expression-brain-8dckcie4zyqr6rch0000](/datasets/md/53.md#visium-spatial-gene-expression-brain-8dckcie4zyqr6rch0000), [visium-spatial-gene-expression-brain-qxfguutdrwurnpgr0000](/datasets/md/26.md#visium-spatial-gene-expression-brain-qxfguutdrwurnpgr0000), [visium-spatial-gene-expression-brain-rrfhsr3frntaqk5h0000](/datasets/md/36.md#visium-spatial-gene-expression-brain-rrfhsr3frntaqk5h0000), [visium-spatial-gene-expression-brain-jh67wel8wmdttbfs0000](/datasets/md/25.md#visium-spatial-gene-expression-brain-jh67wel8wmdttbfs0000), [visium-spatial-gene-expression-brain-m1v9wq5nkljjddm00000](/datasets/md/d7.md#visium-spatial-gene-expression-brain-m1v9wq5nkljjddm00000), [visium-spatial-gene-expression-brain-dvmxkyzvqb5hqedw0000](/datasets/md/3c.md#visium-spatial-gene-expression-brain-dvmxkyzvqb5hqedw0000)
## An atlas of healthy and injured cell states and niches in the human kidney.
- Page: /collections/doi-10-1038-s41586-023-05769-3/
- Kind: comparison
- Datasets: 23
- Reference: 10.1038/s41586-023-05769-3
- Members: [visium-spatial-gene-expression-kidney-te7io1hmxc7bfhua0000](/datasets/md/c6.md#visium-spatial-gene-expression-kidney-te7io1hmxc7bfhua0000), [visium-spatial-gene-expression-kidney-saabppvs64lbwrr90000](/datasets/md/07.md#visium-spatial-gene-expression-kidney-saabppvs64lbwrr90000), [visium-spatial-gene-expression-kidney-kee4iitryd5siypk0000](/datasets/md/b7.md#visium-spatial-gene-expression-kidney-kee4iitryd5siypk0000), [visium-spatial-gene-expression-kidney-fsjxu3ewvhex7aee0000](/datasets/md/dd.md#visium-spatial-gene-expression-kidney-fsjxu3ewvhex7aee0000), [visium-spatial-gene-expression-kidney-2ywsmyv1o6mzlqsr0000](/datasets/md/b4.md#visium-spatial-gene-expression-kidney-2ywsmyv1o6mzlqsr0000), [visium-spatial-gene-expression-kidney-hmc9qadb9edsqrvx0000](/datasets/md/34.md#visium-spatial-gene-expression-kidney-hmc9qadb9edsqrvx0000), [visium-spatial-gene-expression-kidney-snc18tpphmdciemc0000](/datasets/md/3f.md#visium-spatial-gene-expression-kidney-snc18tpphmdciemc0000), [visium-spatial-gene-expression-kidney-pycdxwgalhv9vxb00000](/datasets/md/68.md#visium-spatial-gene-expression-kidney-pycdxwgalhv9vxb00000), [visium-spatial-gene-expression-kidney-gjv7ibyq0pec7oi80000](/datasets/md/4b.md#visium-spatial-gene-expression-kidney-gjv7ibyq0pec7oi80000), [visium-spatial-gene-expression-kidney-qk1l3zdfp5jetn7h0000](/datasets/md/45.md#visium-spatial-gene-expression-kidney-qk1l3zdfp5jetn7h0000), [visium-spatial-gene-expression-kidney-p7j7jj0rdprbohmz0000](/datasets/md/d1.md#visium-spatial-gene-expression-kidney-p7j7jj0rdprbohmz0000), [visium-spatial-gene-expression-kidney-kedtnhxtpirfwndu0000](/datasets/md/e0.md#visium-spatial-gene-expression-kidney-kedtnhxtpirfwndu0000), [visium-spatial-gene-expression-kidney-cfxnvzzeb5orctpz0000](/datasets/md/86.md#visium-spatial-gene-expression-kidney-cfxnvzzeb5orctpz0000), [visium-spatial-gene-expression-kidney-6xdvn7tfwfppgikx0000](/datasets/md/6b.md#visium-spatial-gene-expression-kidney-6xdvn7tfwfppgikx0000), [visium-spatial-gene-expression-kidney-0y6qewkodcorrziz0000](/datasets/md/7c.md#visium-spatial-gene-expression-kidney-0y6qewkodcorrziz0000), [visium-spatial-gene-expression-kidney-pp0fvbxyktqxrmvk0000](/datasets/md/c6.md#visium-spatial-gene-expression-kidney-pp0fvbxyktqxrmvk0000), [visium-spatial-gene-expression-kidney-43hax5bxxh4exz6r0000](/datasets/md/43.md#visium-spatial-gene-expression-kidney-43hax5bxxh4exz6r0000), [visium-spatial-gene-expression-kidney-kz4amthmxvd9wg370000](/datasets/md/be.md#visium-spatial-gene-expression-kidney-kz4amthmxvd9wg370000), [visium-spatial-gene-expression-kidney-b8tqkunjtcaodqv30000](/datasets/md/96.md#visium-spatial-gene-expression-kidney-b8tqkunjtcaodqv30000), [visium-spatial-gene-expression-kidney-ve3laoupuijtf49w0000](/datasets/md/af.md#visium-spatial-gene-expression-kidney-ve3laoupuijtf49w0000), [visium-spatial-gene-expression-kidney-fycc1tjqe5xwm3xr0000](/datasets/md/fe.md#visium-spatial-gene-expression-kidney-fycc1tjqe5xwm3xr0000), [visium-spatial-gene-expression-kidney-uglczzpvj41rr3kh0000](/datasets/md/6f.md#visium-spatial-gene-expression-kidney-uglczzpvj41rr3kh0000), [visium-spatial-gene-expression-kidney-ww3frh1moqnxg0gm0000](/datasets/md/3d.md#visium-spatial-gene-expression-kidney-ww3frh1moqnxg0gm0000)
## Spatial transcriptomics of the ageing ovary
- Page: /collections/geo-gse188257/
- Kind: other
- Datasets: 4
- Reference: PMID:35996587
- Design: The Visium Spatial Gene Expression technology from 10x Genomics was used to evaluate expression in ovary sections from young (3-4 months) and aged (15-16 months) mice. RNA was captured and sequenced from 4 capture areas, each containing 2 ovary sections (one young, one aged) for a total of 4 young and 4 aged samples.
- Members: [visium-spatial-gene-expression-ovary-vp9mqgqjlqzr4dcy0000](/datasets/md/a1.md#visium-spatial-gene-expression-ovary-vp9mqgqjlqzr4dcy0000), [visium-spatial-gene-expression-ovary-s3xchk5rvpgxccn50000](/datasets/md/79.md#visium-spatial-gene-expression-ovary-s3xchk5rvpgxccn50000), [visium-spatial-gene-expression-ovary-wyxaieaqhxqm8ryz0000](/datasets/md/9b.md#visium-spatial-gene-expression-ovary-wyxaieaqhxqm8ryz0000), [visium-spatial-gene-expression-ovary-r9rjq5oqxz4jkdng0000](/datasets/md/c0.md#visium-spatial-gene-expression-ovary-r9rjq5oqxz4jkdng0000)
## Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response
- Page: /collections/geo-gse208253/
- Kind: time course
- Datasets: 12
- Reference: PMID:37596273
- Design: Overall Design Fresh-frozen OSCC tissue was obtained from the Alberta Cancer Research Biobank under the approval of the Health Research Ethics Board of Alberta – Cancer Committee (reference number: HREBA.CC-16-0644). The BioBank OSCC tumor samples were collected at the time of the surgery, embedded in optimal cutting temperature (OCT) compound, and stored frozen at -80C until retrieval for the study. The study samples were sectioned in a cryostat at 10 um, stained with hematoxylin and eosin (H&E) and used for ST. Tissue optimization was performed to determine the optimal permeabilization time for OSCC tissue for the downstream gene expression protocol. Spatial transcriptomics was performed on OSCC cryosections using the Visium platform according to the manufacturer’s protocol (10x Genomics, Pleasanton, CA, USA). Briefly, OCT-embedded 10 micrometer-thick cryosections of OSCC samples were placed on the Visium spatial slide. Sections were enzymatically permeabilized for 24 min. cDNA was obtained from mRNA bound to capture oligos printed on the slide. cDNA quantification was performed using Agilent Bioanalyzer High Sensitivity Kit on an Agilent Bioanalyzer 2100 (Agilent Technologies, CA, USA). cDNA libraries were sequenced on an Illumina NovaSeq 6000 sequencer using the SP flowcell (200 cycles) at the Centre for Health Genomics and Informatics (CHGI, University of Calgary, Alberta, Canada). Sequencing reads were aligned using the 10s Genomics Space Ranger 1.3.1 pipeline to the standard GRCh38 reference genome. 12 samples passing alignment QC were aggregated together using the 10x Genomics Space Ranger aggr function to normalize for read depth between samples. Aggregated samples (n = 12) recovered a total number of 24,876 spots containing tissue sequenced to 43,648 post-normalization mean reads per spot. Extract protocol Fresh-frozen OSCC tissue was obtained from the Alberta Cancer Research Biobank under the approval of the Health Research Ethics Board of Alberta – Cancer Committee (reference number: HREBA.CC-16-0644). The BioBank OSCC tumor samples were collected at the time of the surgery, embedded in optimal cutting temperature (OCT) compound, and stored frozen at -80C until retrieval for the study. The study samples were sectioned in a cryostat at 10 um, stained with hematoxylin and eosin (H&E) and used for ST.
- Members: [visium-spatial-gene-expression-oral-cavity-0r7swc3i9myadqkb0000](/datasets/md/72.md#visium-spatial-gene-expression-oral-cavity-0r7swc3i9myadqkb0000), [visium-spatial-gene-expression-oral-cavity-5faqfdnfni4x0kkj0000](/datasets/md/a5.md#visium-spatial-gene-expression-oral-cavity-5faqfdnfni4x0kkj0000), [visium-spatial-gene-expression-oral-cavity-oiyzqmpyblyqleb90000](/datasets/md/17.md#visium-spatial-gene-expression-oral-cavity-oiyzqmpyblyqleb90000), [visium-spatial-gene-expression-oral-cavity-ph1fhsrlfu9ifllj0000](/datasets/md/7c.md#visium-spatial-gene-expression-oral-cavity-ph1fhsrlfu9ifllj0000), [visium-spatial-gene-expression-oral-cavity-soprmimmiisv4yto0000](/datasets/md/c8.md#visium-spatial-gene-expression-oral-cavity-soprmimmiisv4yto0000), [visium-spatial-gene-expression-oral-cavity-d3lunlfx4qwztelp0000](/datasets/md/94.md#visium-spatial-gene-expression-oral-cavity-d3lunlfx4qwztelp0000), [visium-spatial-gene-expression-oral-cavity-p7hrtoiufxzqrow90000](/datasets/md/28.md#visium-spatial-gene-expression-oral-cavity-p7hrtoiufxzqrow90000), [visium-spatial-gene-expression-oral-cavity-hixqoomrsav1ypfz0000](/datasets/md/b1.md#visium-spatial-gene-expression-oral-cavity-hixqoomrsav1ypfz0000), [visium-spatial-gene-expression-oral-cavity-jjn4l6qlj0cimpb80000](/datasets/md/99.md#visium-spatial-gene-expression-oral-cavity-jjn4l6qlj0cimpb80000), [visium-spatial-gene-expression-oral-cavity-xyitpg2nedzpdvwo0000](/datasets/md/80.md#visium-spatial-gene-expression-oral-cavity-xyitpg2nedzpdvwo0000), [visium-spatial-gene-expression-oral-cavity-krm6syph4qwxigch0000](/datasets/md/a0.md#visium-spatial-gene-expression-oral-cavity-krm6syph4qwxigch0000), [visium-spatial-gene-expression-oral-cavity-jfs5zjv7kp5vme0m0000](/datasets/md/9d.md#visium-spatial-gene-expression-oral-cavity-jfs5zjv7kp5vme0m0000)
## In vivo macrophage engineering reshapes the tumor microenvironment leading to eradication of liver metastases [Visium]
- Page: /collections/geo-gse221359/
- Kind: comparison
- Datasets: 8
- Reference: PMID:37863068
- Design: Spatial transcriptomics to investigate, within the metastatic liver, the areas of preferential IFNa signaling on three distinct cohorts: (1) Control: Control LV-treated mice, (2) Partial responder: IFNa LV-treated mice with reduced tumor volume as compared to Control and, (3) Resistant: IFNa LV-treated mice with tumor volume similar to Control.
- Members: [visium-spatial-gene-expression-liver-ndxicghmgr02lpzk0000](/datasets/md/f2.md#visium-spatial-gene-expression-liver-ndxicghmgr02lpzk0000), [visium-spatial-gene-expression-liver-ncxhwcezrnkmzmxl0000](/datasets/md/8f.md#visium-spatial-gene-expression-liver-ncxhwcezrnkmzmxl0000), [visium-spatial-gene-expression-liver-9h7tdq9fpwlguell0000](/datasets/md/ed.md#visium-spatial-gene-expression-liver-9h7tdq9fpwlguell0000), [visium-spatial-gene-expression-liver-ppsqs7cfaaih53dg0000](/datasets/md/e6.md#visium-spatial-gene-expression-liver-ppsqs7cfaaih53dg0000), [visium-spatial-gene-expression-liver-h4qr9sacztsghspv0000](/datasets/md/fc.md#visium-spatial-gene-expression-liver-h4qr9sacztsghspv0000), [visium-spatial-gene-expression-liver-mwkspsdkrrazznyg0000](/datasets/md/a0.md#visium-spatial-gene-expression-liver-mwkspsdkrrazznyg0000), [visium-spatial-gene-expression-liver-ewbut8y6vpklcem00000](/datasets/md/03.md#visium-spatial-gene-expression-liver-ewbut8y6vpklcem00000), [visium-spatial-gene-expression-liver-dixi13d19xfjnvu00000](/datasets/md/9e.md#visium-spatial-gene-expression-liver-dixi13d19xfjnvu00000)
## Spatial transcriptomics reveal signatures of histopathological changes in muscular sarcoidosis
- Page: /collections/geo-gse243291/
- Kind: other
- Datasets: 2
- Reference: PMID:38067175
- Design: We perform Visium v1 on two FFPE slides from patients identified for granulomatous myositis associated with multisystemic sarcoidosis.
- Members: [visium-spatial-gene-expression-skeletal-muscle-tissue-dvblhbijzxzsl9qx0000](/datasets/md/97.md#visium-spatial-gene-expression-skeletal-muscle-tissue-dvblhbijzxzsl9qx0000), [visium-spatial-gene-expression-skeletal-muscle-tissue-7phwasgzqik0zt0m0000](/datasets/md/44.md#visium-spatial-gene-expression-skeletal-muscle-tissue-7phwasgzqik0zt0m0000)
## Spatial transcriptomics on treatment-naïve pancreatic ductal adenocarcinoma (PDAC) patients
- Page: /collections/geo-gse274103/
- Kind: other
- Datasets: 5
- Reference: PMID:40154487
- Design: Visium spatial transcriptomics (10X Genomics) was performed on FFPE tissues following the Visium Spatial Gene Expression protocol (CG000407). Sequencing was conducted on a NextSeq 2000 (Illumina).
- Members: [visium-spatial-gene-expression-pancreas-su5pn9ey9nkzwchd0000](/datasets/md/ce.md#visium-spatial-gene-expression-pancreas-su5pn9ey9nkzwchd0000), [visium-spatial-gene-expression-pancreas-m5ngpxs7i9ehwzdx0000](/datasets/md/ae.md#visium-spatial-gene-expression-pancreas-m5ngpxs7i9ehwzdx0000), [visium-spatial-gene-expression-pancreas-1sofuukmmumnfwj90000](/datasets/md/57.md#visium-spatial-gene-expression-pancreas-1sofuukmmumnfwj90000), [visium-spatial-gene-expression-pancreas-cqudwo3x2zdrklof0000](/datasets/md/ba.md#visium-spatial-gene-expression-pancreas-cqudwo3x2zdrklof0000), [visium-spatial-gene-expression-pancreas-zkwmgonr1rqzpsd70000](/datasets/md/69.md#visium-spatial-gene-expression-pancreas-zkwmgonr1rqzpsd70000)
## Immune profiling-based targeting of pathogenic T cells with ustekinumab in ANCA-associated glomerulonephritis
- Page: /collections/geo-gse250138/
- Kind: comparison
- Datasets: 23
- Reference: PMID:39300109
- Design: For spatial transcriptomics, formalin-fixed paraffin-embedded (FFPE) kidney tissue sections from patients with ANCA-associated glomerulenephritis (biopsies) and controls (healthy tissue from tumornephrectomies) were transferred on Visium (10x Genomics) slides (spatial for FFPE gene expression human transcriptome) and processed according to the manufacturer's instructions.
- Members: [visium-spatial-gene-expression-kidney-oj9ugjj1xfoiryhn0000](/datasets/md/96.md#visium-spatial-gene-expression-kidney-oj9ugjj1xfoiryhn0000), [visium-spatial-gene-expression-kidney-gjpzt90yu5o9cnpo0000](/datasets/md/3f.md#visium-spatial-gene-expression-kidney-gjpzt90yu5o9cnpo0000), [visium-spatial-gene-expression-kidney-5pavjedg7chbsdlu0000](/datasets/md/98.md#visium-spatial-gene-expression-kidney-5pavjedg7chbsdlu0000), [visium-spatial-gene-expression-kidney-42eqmgtlwzdprpkw0000](/datasets/md/3d.md#visium-spatial-gene-expression-kidney-42eqmgtlwzdprpkw0000), [visium-spatial-gene-expression-kidney-rzcy8fmfo6v8w5c80000](/datasets/md/a7.md#visium-spatial-gene-expression-kidney-rzcy8fmfo6v8w5c80000), [visium-spatial-gene-expression-kidney-fud0i50x7qzzg3nc0000](/datasets/md/4c.md#visium-spatial-gene-expression-kidney-fud0i50x7qzzg3nc0000), [visium-spatial-gene-expression-kidney-wbr4yxwse3escqo30000](/datasets/md/32.md#visium-spatial-gene-expression-kidney-wbr4yxwse3escqo30000), [visium-spatial-gene-expression-kidney-7odg3anf5w2jqijv0000](/datasets/md/f8.md#visium-spatial-gene-expression-kidney-7odg3anf5w2jqijv0000), [visium-spatial-gene-expression-kidney-vu5vk2rwptxd25qe0000](/datasets/md/9b.md#visium-spatial-gene-expression-kidney-vu5vk2rwptxd25qe0000), [visium-spatial-gene-expression-kidney-baazaqvwdwffxvch0000](/datasets/md/49.md#visium-spatial-gene-expression-kidney-baazaqvwdwffxvch0000), [visium-spatial-gene-expression-kidney-zjfkbzmriffbaog80000](/datasets/md/13.md#visium-spatial-gene-expression-kidney-zjfkbzmriffbaog80000), [visium-spatial-gene-expression-kidney-ylw5la7ahqwqfuyw0000](/datasets/md/4e.md#visium-spatial-gene-expression-kidney-ylw5la7ahqwqfuyw0000), [visium-spatial-gene-expression-kidney-8vlh13yl5w6dz5ez0000](/datasets/md/eb.md#visium-spatial-gene-expression-kidney-8vlh13yl5w6dz5ez0000), [visium-spatial-gene-expression-kidney-ohynx0q3gis2ket50000](/datasets/md/e9.md#visium-spatial-gene-expression-kidney-ohynx0q3gis2ket50000), [visium-spatial-gene-expression-kidney-joighodrvcicfwp80000](/datasets/md/5f.md#visium-spatial-gene-expression-kidney-joighodrvcicfwp80000), [visium-spatial-gene-expression-kidney-pujdfcs2vtsrlliy0000](/datasets/md/38.md#visium-spatial-gene-expression-kidney-pujdfcs2vtsrlliy0000), [visium-spatial-gene-expression-kidney-uevgblxl7d3pvcq70000](/datasets/md/5e.md#visium-spatial-gene-expression-kidney-uevgblxl7d3pvcq70000), [visium-spatial-gene-expression-kidney-mco828lkgxnwwewx0000](/datasets/md/ae.md#visium-spatial-gene-expression-kidney-mco828lkgxnwwewx0000), [visium-spatial-gene-expression-kidney-gu6s3zdhzxgjavxc0000](/datasets/md/55.md#visium-spatial-gene-expression-kidney-gu6s3zdhzxgjavxc0000), [visium-spatial-gene-expression-kidney-hfnklkqk3u4kgwij0000](/datasets/md/17.md#visium-spatial-gene-expression-kidney-hfnklkqk3u4kgwij0000), [visium-spatial-gene-expression-kidney-inirj3vcmcz0uqum0000](/datasets/md/d3.md#visium-spatial-gene-expression-kidney-inirj3vcmcz0uqum0000), [visium-spatial-gene-expression-kidney-74xfcopcvgmxnkme0000](/datasets/md/0b.md#visium-spatial-gene-expression-kidney-74xfcopcvgmxnkme0000), [visium-spatial-gene-expression-kidney-um9usndrwz3yreqp0000](/datasets/md/4c.md#visium-spatial-gene-expression-kidney-um9usndrwz3yreqp0000)
## Double-negative B cells and DNASE1L3 colocalise with microbiota in gut-associated lymphoid tissue
- Page: /collections/geo-gse251693/
- Kind: other
- Datasets: 2
- Reference: PMID:38744839
- Design: Two FFPE blocks (STA and STB) containing normal colon were used to perform Visium spatial transcriptomics according manufacturer’s instructions as per demonstrated protocol CG000408 Revision A and CG000409 Revision A.
- Members: [visium-spatial-gene-expression-gut-associated-lymphoid-tissue-nicgbbfqe9vaji5i0000](/datasets/md/3f.md#visium-spatial-gene-expression-gut-associated-lymphoid-tissue-nicgbbfqe9vaji5i0000), [visium-spatial-gene-expression-gut-associated-lymphoid-tissue-aj4r2eqkbpr68nry0000](/datasets/md/c6.md#visium-spatial-gene-expression-gut-associated-lymphoid-tissue-aj4r2eqkbpr68nry0000)
## Cell state dynamics during early stages of serous endometrial carcinoma
- Page: /collections/geo-gse269332/
- Kind: comparison
- Datasets: 12
- Reference: PMID:40923619
- Design: The uterine horns of mice in the diestrus phase of the estrous cycle were collected at three distinct stages after doxycyline injection to create normal, pre-dysplastic, or displastic cohorts. Samples were collected for either scRNAseq or Visium sequencing.
- Members: [visium-spatial-gene-expression-uterus-qaqxffgwxinu6cfk0000](/datasets/md/16.md#visium-spatial-gene-expression-uterus-qaqxffgwxinu6cfk0000), [visium-spatial-gene-expression-uterus-vhxynkv9j7irzvcx0000](/datasets/md/c1.md#visium-spatial-gene-expression-uterus-vhxynkv9j7irzvcx0000), [visium-spatial-gene-expression-uterus-walmjzobzvmeuici0000](/datasets/md/a8.md#visium-spatial-gene-expression-uterus-walmjzobzvmeuici0000), [visium-spatial-gene-expression-uterus-lpjswctiqzha6sre0000](/datasets/md/e2.md#visium-spatial-gene-expression-uterus-lpjswctiqzha6sre0000), [visium-spatial-gene-expression-uterus-rowqoucrfjdciams0000](/datasets/md/d7.md#visium-spatial-gene-expression-uterus-rowqoucrfjdciams0000), [visium-spatial-gene-expression-uterus-x5hvsnnua3067k1b0000](/datasets/md/7c.md#visium-spatial-gene-expression-uterus-x5hvsnnua3067k1b0000), [visium-spatial-gene-expression-uterus-3ed7k7readrzefva0000](/datasets/md/bd.md#visium-spatial-gene-expression-uterus-3ed7k7readrzefva0000), [visium-spatial-gene-expression-uterus-dx3y22vl7zx5evo50000](/datasets/md/cf.md#visium-spatial-gene-expression-uterus-dx3y22vl7zx5evo50000), [visium-spatial-gene-expression-uterus-tdzibvqto9bjjx5b0000](/datasets/md/3e.md#visium-spatial-gene-expression-uterus-tdzibvqto9bjjx5b0000), [visium-spatial-gene-expression-uterus-ygntsfmf2uyq1m140000](/datasets/md/a4.md#visium-spatial-gene-expression-uterus-ygntsfmf2uyq1m140000), [visium-spatial-gene-expression-uterus-x9cagsa9hodklqbn0000](/datasets/md/aa.md#visium-spatial-gene-expression-uterus-x9cagsa9hodklqbn0000), [visium-spatial-gene-expression-uterus-sgtk4wi2gnyxuh5g0000](/datasets/md/82.md#visium-spatial-gene-expression-uterus-sgtk4wi2gnyxuh5g0000)
## Differential Activity of MAPK signalling Defines Fibroblast Subtypes in Pancreatic Cancer (Spatial Transcriptomics)
- Page: /collections/geo-gse274665/
- Kind: other
- Datasets: 4
- Reference: PMID:39627211
- Design: We performed spatial RNAseq profiling with Visium on 4 PDAC tissue samples (2 Basal-like and 2-classical) to check the presence and the spatial localization of our described mapCAF phenotype in the tissue
- Members: [visium-spatial-gene-expression-pancreas-ngsasnnbvgkjsgms0000](/datasets/md/ec.md#visium-spatial-gene-expression-pancreas-ngsasnnbvgkjsgms0000), [visium-spatial-gene-expression-pancreas-ht38hlfsxtvklzjt0000](/datasets/md/8d.md#visium-spatial-gene-expression-pancreas-ht38hlfsxtvklzjt0000), [visium-spatial-gene-expression-pancreas-g3tejm0cdgyymf680000](/datasets/md/2a.md#visium-spatial-gene-expression-pancreas-g3tejm0cdgyymf680000), [visium-spatial-gene-expression-pancreas-iycj0bsc7gqz31ps0000](/datasets/md/3c.md#visium-spatial-gene-expression-pancreas-iycj0bsc7gqz31ps0000)
## Spatial transcriptomics for high-grade serous ovarian carcinoma who were treated with Olaparib maintenance therapy
- Page: /collections/geo-gse288483/
- Kind: comparison
- Datasets: 8
- Reference: PMID:41219363
- Design: Visium spatial transcriptomics was performed on eight patients with high-grade serous ovarian carcinoma. Abbreviations: TC, paclitaxel and carboplatin; PLD, pegylated liposomal doxorubicin; NGT, nogitecan; Bev, bevacizumab; CPT-11, irinotecan; CPT-P, irinotecan and cisplatin; NDP, nedaplatin; DTX, docetaxel; GEM, gemcitabine; wPTX, weekly paclitaxel; CBDCA, carboplatin; DC, docetaxel and carboplatin.
- Members: [visium-spatial-gene-expression-ovary-xhg0z7plxp07ftpo0000](/datasets/md/b0.md#visium-spatial-gene-expression-ovary-xhg0z7plxp07ftpo0000), [visium-spatial-gene-expression-ovary-ln8tmhiqrpylorio0000](/datasets/md/d9.md#visium-spatial-gene-expression-ovary-ln8tmhiqrpylorio0000), [visium-spatial-gene-expression-ovary-lhi8ssyewaaypqhs0000](/datasets/md/55.md#visium-spatial-gene-expression-ovary-lhi8ssyewaaypqhs0000), [visium-spatial-gene-expression-ovary-fur6jgruifgq5dho0000](/datasets/md/b9.md#visium-spatial-gene-expression-ovary-fur6jgruifgq5dho0000), [visium-spatial-gene-expression-ovary-yucmmnysw2vwuhvc0000](/datasets/md/b8.md#visium-spatial-gene-expression-ovary-yucmmnysw2vwuhvc0000), [visium-spatial-gene-expression-ovary-szhpyrni639wvamq0000](/datasets/md/6c.md#visium-spatial-gene-expression-ovary-szhpyrni639wvamq0000), [visium-spatial-gene-expression-ovary-saej7imxesoyf5860000](/datasets/md/bd.md#visium-spatial-gene-expression-ovary-saej7imxesoyf5860000), [visium-spatial-gene-expression-ovary-asqlha3d0t1oyo8g0000](/datasets/md/84.md#visium-spatial-gene-expression-ovary-asqlha3d0t1oyo8g0000)
## Spatial Proteomics and Transcriptomics Reveal Early Immune Cell Organization in Pancreatic Intraepithelial Neoplasia
- Page: /collections/geo-gse294669/
- Kind: other
- Datasets: 13
- Reference: PMID:40569674
- Design: Resected pancreas tissue from 5 treatment-naïve patients with PanIN and chronic pancreatitis in association with pancreatic ductal adenocarcinoma (PDAC) underwent profiling of immune infiltrates surrounding these lesions. Infiltrates surrounding normal pancreatic ducts, PanIN ducts, PDAC tumors, and regions of chronic pancreatitis were profiled and compared by imaging mass cytometry and Visium spatial transcriptomics. Visium spatial transcriptomic data from samples CP04, CP05B, NRL04, PANIN02A, PANIN02B, PANIN04, and PANIN03 are available from GEO accession GSE254829 (GSM8058249 - GSM8058255, respectively). *************************************************************** Raw files for human/patient samples were not submitted to GEO due to concerns about submitting personally identifiable sequence data for open access. ***************************************************************
- Members: [visium-spatial-gene-expression-pancreas-oervnmy8djjs6zp10000](/datasets/md/ba.md#visium-spatial-gene-expression-pancreas-oervnmy8djjs6zp10000), [visium-spatial-gene-expression-pancreas-qep9pd4llykeufe20000](/datasets/md/66.md#visium-spatial-gene-expression-pancreas-qep9pd4llykeufe20000), [visium-spatial-gene-expression-pancreas-9kffrr8qcndmt7ht0000](/datasets/md/a5.md#visium-spatial-gene-expression-pancreas-9kffrr8qcndmt7ht0000), [visium-spatial-gene-expression-pancreas-xkahsp6uljvnryqe0000](/datasets/md/98.md#visium-spatial-gene-expression-pancreas-xkahsp6uljvnryqe0000), [visium-spatial-gene-expression-pancreas-1px59dxu1vfgqwfp0000](/datasets/md/a1.md#visium-spatial-gene-expression-pancreas-1px59dxu1vfgqwfp0000), [visium-spatial-gene-expression-pancreas-b9mjkywpfjxocbiy0000](/datasets/md/eb.md#visium-spatial-gene-expression-pancreas-b9mjkywpfjxocbiy0000), [visium-spatial-gene-expression-pancreas-efwqy5l1tgtg1l4c0000](/datasets/md/f7.md#visium-spatial-gene-expression-pancreas-efwqy5l1tgtg1l4c0000), [visium-spatial-gene-expression-pancreas-o8hhvjye7d52hvs40000](/datasets/md/76.md#visium-spatial-gene-expression-pancreas-o8hhvjye7d52hvs40000), [visium-spatial-gene-expression-pancreas-hm6lxs7dfoj68nma0000](/datasets/md/a0.md#visium-spatial-gene-expression-pancreas-hm6lxs7dfoj68nma0000), [visium-spatial-gene-expression-pancreas-oj5gmggfb2htjtga0000](/datasets/md/09.md#visium-spatial-gene-expression-pancreas-oj5gmggfb2htjtga0000), [visium-spatial-gene-expression-pancreas-wtfgdbpkk06uhle80000](/datasets/md/a8.md#visium-spatial-gene-expression-pancreas-wtfgdbpkk06uhle80000), [visium-spatial-gene-expression-pancreas-b69i2qtiri1l8wmq0000](/datasets/md/ce.md#visium-spatial-gene-expression-pancreas-b69i2qtiri1l8wmq0000), [visium-spatial-gene-expression-pancreas-txgelnfcv6tue8nx0000](/datasets/md/e6.md#visium-spatial-gene-expression-pancreas-txgelnfcv6tue8nx0000)
## Integrating spatial and single-cell transcriptomics to characterize mouse long bone fracture healing process
- Page: /collections/geo-gse297119/
- Kind: time course
- Datasets: 2
- Reference: PMID:40483363
- Design: We conducted high-quality spatial transcriptomic sequencing of long bone periosteal cells at different time points (Day 0, 5 and 15), enabling a more precise exploration of their temporal changes and roles in fracture repair.
- Members: [visium-spatial-gene-expression-periosteum-3fubi35h3yop2co10000](/datasets/md/5e.md#visium-spatial-gene-expression-periosteum-3fubi35h3yop2co10000), [visium-spatial-gene-expression-periosteum-uaxrvibdetrhxhbl0000](/datasets/md/a2.md#visium-spatial-gene-expression-periosteum-uaxrvibdetrhxhbl0000)
## Spatiotemporal organisation of residual disease in mouse and human BRCA1-deficient mammary tumors and breast cancer
- Page: /collections/geo-gse299631/
- Kind: comparison
- Datasets: 36
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299631
- Design: Spatial transcriptomics: Mammary tumors derived from the K14cre;Brca1F/F;Trp53F/F (KB1P) mouse model were transplanted into the fourth mammary fat pad of syngeneic FVB/NJ mice. To minimise genetic variability, all tumors originated from two parental tumors that were subdivided before transplantation. Tumor-bearing mice were sacrificed at baseline or treated with a single dose of cisplatin or TAC therapy (doxorubicin, docetaxel, and cyclophosphamide). Spatial transcriptomics (ST) was applied to primary (n = 10), residual (n = 16), recurrent (n = 4) tumor sections, and healthy mammary glands (n = 2), (total n = 32). Residual tumors were collected at 7 (TAC: n = 2, Cisplatin: n = 2) or 12 days (TAC: n = 4, Cisplatin: n = 3) post-treatment. Recurrent tumors were harvested upon regrowth (TAC: n = 2, Cisplatin: n = 2). All animal experiments were approved by the Animal Ethics Committee of the canton of Bern (Switzerland) and are in accordance with the current Swiss Acts on Animal Experimentation. Additionally, tumor samples from five women carrying germline BRCA1 mutations were collected at surgery. ST was performed on primary (n = 2) and residual (n = 3) tumors (after neoadjuvant chemotherapy). Patients were treated at Geneva University Hospitals in Switzerland. The study was approved by the local ethical committee under protocol CCER 2019-00004, and all donors were coded. scRNA-seq: Mammary tumors derived from the K14cre;Brca1F/F;Trp53F/F (KB1P) mouse model were transplanted into the fourth mammary fat pad of syngeneic FVB/NJ mice. To minimise genetic variability, all tumors originated from two parental tumors that were subdivided before transplantation. Tumor-bearing mice were sacrificed at baseline or treated with a single dose of TAC therapy (doxorubicin, docetaxel, and cyclophosphamide). Single-cell RNA sequencing was performed on primary (n = 3) and residual (n = 3) tumors and collected 12 days post-treatment. All animal experiments were approved by the Animal Ethics Committee of the canton of Bern (Switzerland) and are in accordance with the current Swiss Acts on Animal Experimentation.
- Members: [visium-spatial-gene-expression-breast-jykwaqyfywcwv3ur0000](/datasets/md/00.md#visium-spatial-gene-expression-breast-jykwaqyfywcwv3ur0000), [visium-spatial-gene-expression-breast-5wfe6lxjvnp77fsd0000](/datasets/md/c3.md#visium-spatial-gene-expression-breast-5wfe6lxjvnp77fsd0000), [visium-spatial-gene-expression-breast-mnwpxtm3en1dnex00000](/datasets/md/84.md#visium-spatial-gene-expression-breast-mnwpxtm3en1dnex00000), [visium-spatial-gene-expression-breast-7ls3xln8mi1ckxtg0000](/datasets/md/ac.md#visium-spatial-gene-expression-breast-7ls3xln8mi1ckxtg0000), [visium-spatial-gene-expression-breast-lnfmbqbdgwglbafc0000](/datasets/md/3c.md#visium-spatial-gene-expression-breast-lnfmbqbdgwglbafc0000), [visium-spatial-gene-expression-breast-pdhw4bccv5pq5xtw0000](/datasets/md/17.md#visium-spatial-gene-expression-breast-pdhw4bccv5pq5xtw0000), [visium-spatial-gene-expression-breast-o7ycad1xp9pujah80000](/datasets/md/67.md#visium-spatial-gene-expression-breast-o7ycad1xp9pujah80000), [visium-spatial-gene-expression-breast-7ykixwq52xwqz2ws0000](/datasets/md/ad.md#visium-spatial-gene-expression-breast-7ykixwq52xwqz2ws0000), [visium-spatial-gene-expression-breast-hsadruwiu23snxzh0000](/datasets/md/39.md#visium-spatial-gene-expression-breast-hsadruwiu23snxzh0000), [visium-spatial-gene-expression-breast-u8pmy88kzx2du9nt0000](/datasets/md/d2.md#visium-spatial-gene-expression-breast-u8pmy88kzx2du9nt0000), [visium-spatial-gene-expression-breast-eikbyeqp20jjfyji0000](/datasets/md/94.md#visium-spatial-gene-expression-breast-eikbyeqp20jjfyji0000), [visium-spatial-gene-expression-breast-uzorg1v9eeeqa1bl0000](/datasets/md/c2.md#visium-spatial-gene-expression-breast-uzorg1v9eeeqa1bl0000), [visium-spatial-gene-expression-breast-4t6wxw17za14qbk70000](/datasets/md/4c.md#visium-spatial-gene-expression-breast-4t6wxw17za14qbk70000), [visium-spatial-gene-expression-breast-crc2sslsmsev88ai0000](/datasets/md/a7.md#visium-spatial-gene-expression-breast-crc2sslsmsev88ai0000), [visium-spatial-gene-expression-breast-r6yj1nehh0xyfe6z0000](/datasets/md/98.md#visium-spatial-gene-expression-breast-r6yj1nehh0xyfe6z0000), [visium-spatial-gene-expression-breast-dkuzjjl32168jn9k0000](/datasets/md/c3.md#visium-spatial-gene-expression-breast-dkuzjjl32168jn9k0000), [visium-spatial-gene-expression-breast-jonmobq324gmmtbf0000](/datasets/md/a4.md#visium-spatial-gene-expression-breast-jonmobq324gmmtbf0000), [visium-spatial-gene-expression-breast-wuo7og1vrk1mu6m80000](/datasets/md/72.md#visium-spatial-gene-expression-breast-wuo7og1vrk1mu6m80000), [visium-spatial-gene-expression-breast-nghvgp3wzlb9bvc60000](/datasets/md/62.md#visium-spatial-gene-expression-breast-nghvgp3wzlb9bvc60000), [visium-spatial-gene-expression-breast-frfjv2trhyqjuja30000](/datasets/md/98.md#visium-spatial-gene-expression-breast-frfjv2trhyqjuja30000), [visium-spatial-gene-expression-breast-691yqhvgupa0ehqd0000](/datasets/md/25.md#visium-spatial-gene-expression-breast-691yqhvgupa0ehqd0000), [visium-spatial-gene-expression-breast-pnfwpjjur0s3i7hk0000](/datasets/md/34.md#visium-spatial-gene-expression-breast-pnfwpjjur0s3i7hk0000), [visium-spatial-gene-expression-breast-vdaednajv85rrynh0000](/datasets/md/d3.md#visium-spatial-gene-expression-breast-vdaednajv85rrynh0000), [visium-spatial-gene-expression-breast-9khiv9hz7hw9hetw0000](/datasets/md/f1.md#visium-spatial-gene-expression-breast-9khiv9hz7hw9hetw0000), [visium-spatial-gene-expression-breast-xsy8esnukndv9nmf0000](/datasets/md/80.md#visium-spatial-gene-expression-breast-xsy8esnukndv9nmf0000), [visium-spatial-gene-expression-breast-q9ycbhp3wen9tckd0000](/datasets/md/03.md#visium-spatial-gene-expression-breast-q9ycbhp3wen9tckd0000), [visium-spatial-gene-expression-breast-usd0dv2lqqdj0f8q0000](/datasets/md/90.md#visium-spatial-gene-expression-breast-usd0dv2lqqdj0f8q0000), [visium-spatial-gene-expression-breast-7pyvdastqxmy7ghw0000](/datasets/md/81.md#visium-spatial-gene-expression-breast-7pyvdastqxmy7ghw0000), [visium-spatial-gene-expression-breast-zu50kdtifd3nop130000](/datasets/md/da.md#visium-spatial-gene-expression-breast-zu50kdtifd3nop130000), [visium-spatial-gene-expression-breast-odrit57vlkjcq3f70000](/datasets/md/75.md#visium-spatial-gene-expression-breast-odrit57vlkjcq3f70000), [visium-spatial-gene-expression-breast-frezmrpe4gfecbre0000](/datasets/md/62.md#visium-spatial-gene-expression-breast-frezmrpe4gfecbre0000), [visium-spatial-gene-expression-breast-azlsjwke8c0blfkv0000](/datasets/md/a0.md#visium-spatial-gene-expression-breast-azlsjwke8c0blfkv0000), [visium-spatial-gene-expression-breast-vzetvn7ajfnymaxj0000](/datasets/md/14.md#visium-spatial-gene-expression-breast-vzetvn7ajfnymaxj0000), [visium-spatial-gene-expression-breast-ziwl7pews9xxjcel0000](/datasets/md/f1.md#visium-spatial-gene-expression-breast-ziwl7pews9xxjcel0000), [visium-spatial-gene-expression-breast-6biq1u75kxxx3vqc0000](/datasets/md/81.md#visium-spatial-gene-expression-breast-6biq1u75kxxx3vqc0000), [visium-spatial-gene-expression-breast-3bu4fhpnl21keglo0000](/datasets/md/e0.md#visium-spatial-gene-expression-breast-3bu4fhpnl21keglo0000)
## Comparative Eye Transcriptome Atlas
- Page: /collections/geo-gse309408/
- Kind: other
- Datasets: 4
- Reference: PMID:41565811
- Design: Retinas were dissected from healthy adult animals of four species: the green anole (Anolis carolinensis; n = 2), zebra finch (Taeniopygia guttata; n = 4 for Visium, n = 6 for Chromium), rock pigeon (Columba livia; n = 1), and chicken (Gallus gallus; n = 1). For spatial transcriptomics, retinas were cryosectioned and processed with the 10x Genomics Visium Spatial Gene Expression kit v1 (55 µm spot resolution) and imaged at 20× magnification before library preparation. For single-cell transcriptomics, retinas from zebra finches were dissociated and processed with the 10x Genomics Chromium Single Cell 3′ v3 workflow. All libraries were sequenced on an Illumina HiSeq 4000 using paired-end 2 × 150 bp reads. Raw data were processed with SpaceRanger 3.1.1 (Visium) and CellRanger 7.1.0 (Chromium) against the following reference genomes: AnoCar3.1 (A. carolinensis), TaeGut1 (T. guttata), Cliv_2.1 (C. livia), and GRCg7b (G. gallus). The processed data deposited here are the standard filtered outputs of these pipelines without additional ambient RNA removal, doublet removal, or downstream QC filtering.
- Members: [visium-spatial-gene-expression-retina-ybt8lfqlcpfxof0g0000](/datasets/md/d6.md#visium-spatial-gene-expression-retina-ybt8lfqlcpfxof0g0000), [visium-spatial-gene-expression-retina-g2no8bsdsv7dohye0000](/datasets/md/19.md#visium-spatial-gene-expression-retina-g2no8bsdsv7dohye0000), [visium-spatial-gene-expression-retina-za7dtkcnkcokulwq0000](/datasets/md/41.md#visium-spatial-gene-expression-retina-za7dtkcnkcokulwq0000), [visium-spatial-gene-expression-retina-hyd7gc2plsxeedly0000](/datasets/md/f5.md#visium-spatial-gene-expression-retina-hyd7gc2plsxeedly0000)
## Spatially-guided metabolomics profiling of heterogeneous human tumor tissues
- Page: /collections/geo-gse312327/
- Kind: other
- Datasets: 2
- Reference: PMID:41922830
- Design: We conducted a spatial transcriptomic analysis using visium technology from 10x genomics on 2 FFPE samples obtained prospectively from the PLANET study cohort (NCT03267641), which consisted of patients with primary liver cancers that have undergone surgical resections.
- Members: [visium-spatial-gene-expression-liver-skbxtg4p2nrn2tvz0000](/datasets/md/d4.md#visium-spatial-gene-expression-liver-skbxtg4p2nrn2tvz0000), [visium-spatial-gene-expression-liver-2vnrdtgyfj393ugt0000](/datasets/md/e9.md#visium-spatial-gene-expression-liver-2vnrdtgyfj393ugt0000)
## The Dichotomy of Tumor Control by Recruited and Resident Tumor-Associated Macrophages
- Page: /collections/geo-gse313081/
- Kind: comparison
- Datasets: 4
- Design: Spatial transcriptomics were performed on four tumor-bearing lungs (two B16F10 melanoma, two KPAR1.3 adenocarcinoma) using the 10x Xenium platform and a targeted gene panel enriched for pan leukocytes, myeloid cells, chemokines, and stromal transcripts.
- Members: [10x-xenium-lung-bbidnn1r2b8cdadj0000](/datasets/md/9b.md#10x-xenium-lung-bbidnn1r2b8cdadj0000), [10x-xenium-lung-daxusdmnz94yhe4t0000](/datasets/md/c0.md#10x-xenium-lung-daxusdmnz94yhe4t0000), [10x-xenium-lung-wzyw0osflbeycuaf0000](/datasets/md/a5.md#10x-xenium-lung-wzyw0osflbeycuaf0000), [10x-xenium-lung-bnzzexw7fjigtkx30000](/datasets/md/ea.md#10x-xenium-lung-bnzzexw7fjigtkx30000)
## A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain.
- Page: /collections/abc-merfish-c57bl6j-638850/
- Kind: publication
- Datasets: 59
- Reference: 10.1038/s41586-023-06812-z
- Members: [vizgen-merscope-brain-nlqf721wlloykmpb0001](/datasets/md/ee.md#vizgen-merscope-brain-nlqf721wlloykmpb0001), [vizgen-merscope-brain-wkhquxofmyctocxg0001](/datasets/md/e7.md#vizgen-merscope-brain-wkhquxofmyctocxg0001), [vizgen-merscope-brain-tfrvgsm9ohn1wysz0001](/datasets/md/22.md#vizgen-merscope-brain-tfrvgsm9ohn1wysz0001), [vizgen-merscope-brain-5ruw1uor2mqxsxrt0001](/datasets/md/54.md#vizgen-merscope-brain-5ruw1uor2mqxsxrt0001), [vizgen-merscope-brain-9cbwcjywhtocivar0001](/datasets/md/cb.md#vizgen-merscope-brain-9cbwcjywhtocivar0001), [vizgen-merscope-brain-z3qbt97bvcqjevya0001](/datasets/md/3b.md#vizgen-merscope-brain-z3qbt97bvcqjevya0001), [vizgen-merscope-brain-phfz4ektqf958p2q0001](/datasets/md/78.md#vizgen-merscope-brain-phfz4ektqf958p2q0001), [vizgen-merscope-brain-hpefzpk5puxpxb700001](/datasets/md/54.md#vizgen-merscope-brain-hpefzpk5puxpxb700001), [vizgen-merscope-brain-ukgp3rkicqmeiql80001](/datasets/md/3a.md#vizgen-merscope-brain-ukgp3rkicqmeiql80001), [vizgen-merscope-brain-hibrzjv0bwn8ldsl0001](/datasets/md/e7.md#vizgen-merscope-brain-hibrzjv0bwn8ldsl0001), [vizgen-merscope-brain-6o0hkr7hvfgrxes30000](/datasets/md/dd.md#vizgen-merscope-brain-6o0hkr7hvfgrxes30000), [vizgen-merscope-brain-qggvzhefp4ehawx50000](/datasets/md/68.md#vizgen-merscope-brain-qggvzhefp4ehawx50000), [vizgen-merscope-brain-lfbpvsaebf7w97fo0000](/datasets/md/b2.md#vizgen-merscope-brain-lfbpvsaebf7w97fo0000), [vizgen-merscope-brain-8tct7mlsjjpapnys0000](/datasets/md/6f.md#vizgen-merscope-brain-8tct7mlsjjpapnys0000), [vizgen-merscope-brain-ygseahnmnrphgj4u0000](/datasets/md/19.md#vizgen-merscope-brain-ygseahnmnrphgj4u0000), [vizgen-merscope-brain-hnr0ua8snxe62ixb0000](/datasets/md/fb.md#vizgen-merscope-brain-hnr0ua8snxe62ixb0000), [vizgen-merscope-brain-xzwchayvsykljb4h0000](/datasets/md/d1.md#vizgen-merscope-brain-xzwchayvsykljb4h0000), [vizgen-merscope-brain-f8el7lchxbghpdih0000](/datasets/md/cb.md#vizgen-merscope-brain-f8el7lchxbghpdih0000), [vizgen-merscope-brain-yvup97zgn0bhzoi10000](/datasets/md/c6.md#vizgen-merscope-brain-yvup97zgn0bhzoi10000), [vizgen-merscope-brain-gstsyukwkczg9b3b0000](/datasets/md/31.md#vizgen-merscope-brain-gstsyukwkczg9b3b0000), [vizgen-merscope-brain-v2gbhduoiif6j8pq0000](/datasets/md/d6.md#vizgen-merscope-brain-v2gbhduoiif6j8pq0000), [vizgen-merscope-brain-fveh8rxlso1ixiqf0000](/datasets/md/e1.md#vizgen-merscope-brain-fveh8rxlso1ixiqf0000), [vizgen-merscope-brain-xxqefmcdkguljy4f0000](/datasets/md/81.md#vizgen-merscope-brain-xxqefmcdkguljy4f0000), [vizgen-merscope-brain-ernyz25mgmkhacvi0000](/datasets/md/28.md#vizgen-merscope-brain-ernyz25mgmkhacvi0000), [vizgen-merscope-brain-wjgi9vs7mbh1fdgd0000](/datasets/md/80.md#vizgen-merscope-brain-wjgi9vs7mbh1fdgd0000), [vizgen-merscope-brain-cme97lmesgqemvvc0000](/datasets/md/44.md#vizgen-merscope-brain-cme97lmesgqemvvc0000), [vizgen-merscope-brain-edyxlcigjv1hzm590000](/datasets/md/bc.md#vizgen-merscope-brain-edyxlcigjv1hzm590000), [vizgen-merscope-brain-jk9umbmvpetzdion0000](/datasets/md/3b.md#vizgen-merscope-brain-jk9umbmvpetzdion0000), [vizgen-merscope-brain-vynwr6o1ggtctqmz0000](/datasets/md/c5.md#vizgen-merscope-brain-vynwr6o1ggtctqmz0000), [vizgen-merscope-brain-1tqspplzaexte0pl0000](/datasets/md/5b.md#vizgen-merscope-brain-1tqspplzaexte0pl0000), [vizgen-merscope-brain-sfbvsxxjfuaqfaur0000](/datasets/md/9d.md#vizgen-merscope-brain-sfbvsxxjfuaqfaur0000), [vizgen-merscope-brain-idniq4klrnj79lwi0000](/datasets/md/1e.md#vizgen-merscope-brain-idniq4klrnj79lwi0000), [vizgen-merscope-brain-7nsdoprfqgkqbzwx0000](/datasets/md/ea.md#vizgen-merscope-brain-7nsdoprfqgkqbzwx0000), [vizgen-merscope-brain-vvkwgmv3javejmwo0000](/datasets/md/eb.md#vizgen-merscope-brain-vvkwgmv3javejmwo0000), [vizgen-merscope-brain-ebeqmrr8jkuqookn0000](/datasets/md/48.md#vizgen-merscope-brain-ebeqmrr8jkuqookn0000), [vizgen-merscope-brain-cakkopqlsnah5h5p0000](/datasets/md/a0.md#vizgen-merscope-brain-cakkopqlsnah5h5p0000), [vizgen-merscope-brain-dtmpllgwxw5dlwew0000](/datasets/md/fe.md#vizgen-merscope-brain-dtmpllgwxw5dlwew0000), [vizgen-merscope-brain-qsehv79c64bpuhus0000](/datasets/md/a2.md#vizgen-merscope-brain-qsehv79c64bpuhus0000), [vizgen-merscope-brain-wiaxgawjf9mzbcvw0000](/datasets/md/13.md#vizgen-merscope-brain-wiaxgawjf9mzbcvw0000), [vizgen-merscope-brain-8b1xfvmpfpgvzht00000](/datasets/md/c3.md#vizgen-merscope-brain-8b1xfvmpfpgvzht00000), [vizgen-merscope-brain-irr4aec6ml4a4ior0000](/datasets/md/91.md#vizgen-merscope-brain-irr4aec6ml4a4ior0000), [vizgen-merscope-brain-rby5u6qsvgexj9my0000](/datasets/md/c4.md#vizgen-merscope-brain-rby5u6qsvgexj9my0000), [vizgen-merscope-brain-22safuhdviyp5hfl0000](/datasets/md/02.md#vizgen-merscope-brain-22safuhdviyp5hfl0000), [vizgen-merscope-brain-bsfb1alv5shxipqm0000](/datasets/md/6f.md#vizgen-merscope-brain-bsfb1alv5shxipqm0000), [vizgen-merscope-brain-ww6zk4pjggevrp6o0000](/datasets/md/c8.md#vizgen-merscope-brain-ww6zk4pjggevrp6o0000), [vizgen-merscope-brain-nnj38edipdxayysv0000](/datasets/md/78.md#vizgen-merscope-brain-nnj38edipdxayysv0000), [vizgen-merscope-brain-fo7zwdqfkx7prj3p0000](/datasets/md/58.md#vizgen-merscope-brain-fo7zwdqfkx7prj3p0000), [vizgen-merscope-brain-y7vxa4qddcnn6jbh0000](/datasets/md/18.md#vizgen-merscope-brain-y7vxa4qddcnn6jbh0000), [vizgen-merscope-brain-hgvc7yqicsmu1dy60000](/datasets/md/83.md#vizgen-merscope-brain-hgvc7yqicsmu1dy60000), [vizgen-merscope-brain-ebbuxfk72csitazb0000](/datasets/md/cb.md#vizgen-merscope-brain-ebbuxfk72csitazb0000), [vizgen-merscope-brain-w9b1axhz7yywqojy0000](/datasets/md/e5.md#vizgen-merscope-brain-w9b1axhz7yywqojy0000), [vizgen-merscope-brain-ze0nsffld586tdqd0000](/datasets/md/bb.md#vizgen-merscope-brain-ze0nsffld586tdqd0000), [vizgen-merscope-brain-mbfja0doqmzj0tnq0000](/datasets/md/a2.md#vizgen-merscope-brain-mbfja0doqmzj0tnq0000), [vizgen-merscope-brain-b5dycgh4a08dt4v40000](/datasets/md/97.md#vizgen-merscope-brain-b5dycgh4a08dt4v40000), [vizgen-merscope-brain-b5hxqsg9rtohps9t0000](/datasets/md/db.md#vizgen-merscope-brain-b5hxqsg9rtohps9t0000), [vizgen-merscope-brain-rdlbhc24evdpzwth0000](/datasets/md/3b.md#vizgen-merscope-brain-rdlbhc24evdpzwth0000), [vizgen-merscope-brain-rw4ih3h0ktoq0a9t0000](/datasets/md/c5.md#vizgen-merscope-brain-rw4ih3h0ktoq0a9t0000), [vizgen-merscope-brain-tbmogtlpb5nhcjd60000](/datasets/md/61.md#vizgen-merscope-brain-tbmogtlpb5nhcjd60000), [vizgen-merscope-brain-6vl0temjp1lcixi70000](/datasets/md/77.md#vizgen-merscope-brain-6vl0temjp1lcixi70000)
## Aging in mice alters regionally enriched striatal astrocytes.
- Page: /collections/geo-gse262083/
- Kind: publication
- Datasets: 4
- Reference: 10.1038/s41467-025-63429-8
- Members: [vizgen-merscope-striatum-3zj6o1s2ymilvmob0000](/datasets/md/68.md#vizgen-merscope-striatum-3zj6o1s2ymilvmob0000), [vizgen-merscope-striatum-9j68xt35zipwsapx0000](/datasets/md/96.md#vizgen-merscope-striatum-9j68xt35zipwsapx0000), [vizgen-merscope-striatum-5qiqevy4wfxfk8n60000](/datasets/md/ed.md#vizgen-merscope-striatum-5qiqevy4wfxfk8n60000), [vizgen-merscope-striatum-kjft5zevyfhnequu0000](/datasets/md/01.md#vizgen-merscope-striatum-kjft5zevyfhnequu0000)
## geo-gse292156
- Page: /collections/geo-gse292156/
- Kind: other
- Datasets: 3
- Members: [stereo-seq-skin-of-body-irzhfnt6ksak6q450000](/datasets/md/6e.md#stereo-seq-skin-of-body-irzhfnt6ksak6q450000), [stereo-seq-skin-of-body-zwglbraxtwgtguzw0000](/datasets/md/b0.md#stereo-seq-skin-of-body-zwglbraxtwgtguzw0000), [stereo-seq-skin-of-body-5hdwb5uvjmeplqib0000](/datasets/md/50.md#stereo-seq-skin-of-body-5hdwb5uvjmeplqib0000)
## geo-gse295815
- Page: /collections/geo-gse295815/
- Kind: other
- Datasets: 9
- Members: [stereo-seq-forebrain-xb7jmoadwduwcyzr0000](/datasets/md/7d.md#stereo-seq-forebrain-xb7jmoadwduwcyzr0000), [stereo-seq-forebrain-bmbpourgezjs0wq70000](/datasets/md/52.md#stereo-seq-forebrain-bmbpourgezjs0wq70000), [stereo-seq-forebrain-wgyhtwcdgxuc3he70000](/datasets/md/54.md#stereo-seq-forebrain-wgyhtwcdgxuc3he70000), [stereo-seq-forebrain-htliz3wpwyz8mfg20000](/datasets/md/f5.md#stereo-seq-forebrain-htliz3wpwyz8mfg20000), [stereo-seq-forebrain-dhwvse25m5nlwb1l0000](/datasets/md/d5.md#stereo-seq-forebrain-dhwvse25m5nlwb1l0000), [stereo-seq-forebrain-aufkkvlwyhe2rwta0000](/datasets/md/85.md#stereo-seq-forebrain-aufkkvlwyhe2rwta0000), [stereo-seq-forebrain-hdjq6c03oqmtnbng0000](/datasets/md/51.md#stereo-seq-forebrain-hdjq6c03oqmtnbng0000), [stereo-seq-forebrain-mj9q3kqji4n3qnsd0000](/datasets/md/bc.md#stereo-seq-forebrain-mj9q3kqji4n3qnsd0000), [stereo-seq-forebrain-48c9cvjk1nhbtyk60000](/datasets/md/6d.md#stereo-seq-forebrain-48c9cvjk1nhbtyk60000)