# SpatialData-DB collections, shard d

Generated from catalog release catalog-2026-11-01. Each collection has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="10x-xenium-human-lung-cancer-post-xenium-technote"></a>
## 10x-xenium-human-lung-cancer-post-xenium-technote

- Page: /collections/10x-xenium-human-lung-cancer-post-xenium-technote/
- Kind: other
- Datasets: 2
- Members: [10x-xenium-lung-zu8xeuiiioh0upcy0001](/datasets/md/f4.md#10x-xenium-lung-zu8xeuiiioh0upcy0001), [10x-xenium-lung-quo1w4fxbqdc9bar0001](/datasets/md/3c.md#10x-xenium-lung-quo1w4fxbqdc9bar0001)

<a id="doi-10-1016-j-immuni-2022-02-001"></a>
## Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer.

- Page: /collections/doi-10-1016-j-immuni-2022-02-001/
- Kind: replicates
- Datasets: 24
- Reference: 10.1016/j.immuni.2022.02.001
- Members: [visium-spatial-gene-expression-kidney-lduutmu9vmx3amoz0000](/datasets/md/80.md#visium-spatial-gene-expression-kidney-lduutmu9vmx3amoz0000), [visium-spatial-gene-expression-kidney-iqhbh4ma1ftdhtyt0000](/datasets/md/07.md#visium-spatial-gene-expression-kidney-iqhbh4ma1ftdhtyt0000), [visium-spatial-gene-expression-kidney-iezsazxbxn3cgs7f0000](/datasets/md/a9.md#visium-spatial-gene-expression-kidney-iezsazxbxn3cgs7f0000), [visium-spatial-gene-expression-kidney-gqrm67wap5dowrwz0000](/datasets/md/6b.md#visium-spatial-gene-expression-kidney-gqrm67wap5dowrwz0000), [visium-spatial-gene-expression-kidney-kswiygfdxtxgoetf0000](/datasets/md/82.md#visium-spatial-gene-expression-kidney-kswiygfdxtxgoetf0000), [visium-spatial-gene-expression-kidney-gywyxkjwy0ci1fb00000](/datasets/md/42.md#visium-spatial-gene-expression-kidney-gywyxkjwy0ci1fb00000), [visium-spatial-gene-expression-kidney-bitchqvgt9pbnqer0000](/datasets/md/c6.md#visium-spatial-gene-expression-kidney-bitchqvgt9pbnqer0000), [visium-spatial-gene-expression-kidney-tovzutjcdfonp9nr0000](/datasets/md/3f.md#visium-spatial-gene-expression-kidney-tovzutjcdfonp9nr0000), [visium-spatial-gene-expression-kidney-jwrv4lhyabdhjqku0000](/datasets/md/82.md#visium-spatial-gene-expression-kidney-jwrv4lhyabdhjqku0000), [visium-spatial-gene-expression-kidney-rscbqr5ud0vv8zpn0000](/datasets/md/fd.md#visium-spatial-gene-expression-kidney-rscbqr5ud0vv8zpn0000), [visium-spatial-gene-expression-kidney-ie0jblepjkoahhjg0000](/datasets/md/f6.md#visium-spatial-gene-expression-kidney-ie0jblepjkoahhjg0000), [visium-spatial-gene-expression-kidney-xbonffxet2otpaqp0000](/datasets/md/b6.md#visium-spatial-gene-expression-kidney-xbonffxet2otpaqp0000), [visium-spatial-gene-expression-kidney-h3bndm7zdhjzf4mw0000](/datasets/md/b8.md#visium-spatial-gene-expression-kidney-h3bndm7zdhjzf4mw0000), [visium-spatial-gene-expression-kidney-mr1ymh1mu9n1dcus0000](/datasets/md/a7.md#visium-spatial-gene-expression-kidney-mr1ymh1mu9n1dcus0000), [visium-spatial-gene-expression-kidney-a06bzjtzgk9wh2ub0000](/datasets/md/03.md#visium-spatial-gene-expression-kidney-a06bzjtzgk9wh2ub0000), [visium-spatial-gene-expression-kidney-8xpjnjegqzwbgmmx0000](/datasets/md/59.md#visium-spatial-gene-expression-kidney-8xpjnjegqzwbgmmx0000), [visium-spatial-gene-expression-kidney-yp9fd7ozc0c49vgs0000](/datasets/md/b7.md#visium-spatial-gene-expression-kidney-yp9fd7ozc0c49vgs0000), [visium-spatial-gene-expression-kidney-dusjoxxizwzu6aaz0000](/datasets/md/57.md#visium-spatial-gene-expression-kidney-dusjoxxizwzu6aaz0000), [visium-spatial-gene-expression-kidney-p5awywpglqe9iyxm0000](/datasets/md/fc.md#visium-spatial-gene-expression-kidney-p5awywpglqe9iyxm0000), [visium-spatial-gene-expression-kidney-36rv58xjdrtrahrw0000](/datasets/md/09.md#visium-spatial-gene-expression-kidney-36rv58xjdrtrahrw0000), [visium-spatial-gene-expression-kidney-vwa7dzfopapcf3b90000](/datasets/md/ea.md#visium-spatial-gene-expression-kidney-vwa7dzfopapcf3b90000), [visium-spatial-gene-expression-kidney-pvxfaoskzntsgr2h0000](/datasets/md/c3.md#visium-spatial-gene-expression-kidney-pvxfaoskzntsgr2h0000), [visium-spatial-gene-expression-kidney-cqnjaive6lre2gp60000](/datasets/md/e4.md#visium-spatial-gene-expression-kidney-cqnjaive6lre2gp60000), [visium-spatial-gene-expression-kidney-mpim5bgxtuop5cdx0000](/datasets/md/46.md#visium-spatial-gene-expression-kidney-mpim5bgxtuop5cdx0000)

<a id="geo-gse182939"></a>
## Spatially resolved transcriptomic analysis of acute kidney injury in a female murine model

- Page: /collections/geo-gse182939/
- Kind: time course
- Datasets: 5
- Reference: PMID:34853151
- Design: 10X Visium was used to create a transcriptomic atlas of female kidney injury to discover, validate, and define spatial and temporal expression of injury specific genes.
- Members: [visium-spatial-gene-expression-kidney-76q9yu2thgjhrgdt0000](/datasets/md/55.md#visium-spatial-gene-expression-kidney-76q9yu2thgjhrgdt0000), [visium-spatial-gene-expression-kidney-5xpnmm5mmdlrvrjb0000](/datasets/md/44.md#visium-spatial-gene-expression-kidney-5xpnmm5mmdlrvrjb0000), [visium-spatial-gene-expression-kidney-77wqbbj0goz4lt2n0000](/datasets/md/58.md#visium-spatial-gene-expression-kidney-77wqbbj0goz4lt2n0000), [visium-spatial-gene-expression-kidney-2bjfngiraiyzkuqa0000](/datasets/md/9a.md#visium-spatial-gene-expression-kidney-2bjfngiraiyzkuqa0000), [visium-spatial-gene-expression-kidney-hqxia94cm5zfia2n0000](/datasets/md/2d.md#visium-spatial-gene-expression-kidney-hqxia94cm5zfia2n0000)

<a id="geo-gse195575"></a>
## mousemodel_Heptablastoma spatial transcriptomics

- Page: /collections/geo-gse195575/
- Kind: other
- Datasets: 5
- Reference: PMID:37414763
- Design: Flash Frozen Tumor was harvested  from Hepatocellular model. Spatial Tx data was generated using  Visium Spatial Gene expression kit from 10X genomics. The H&E images were acuqired using Zeiss- AxioScan slide scanner.
- Members: [visium-spatial-gene-expression-liver-dp3shzrrtq2aab9h0000](/datasets/md/49.md#visium-spatial-gene-expression-liver-dp3shzrrtq2aab9h0000), [visium-spatial-gene-expression-liver-19t45ukapnybn0d90000](/datasets/md/e3.md#visium-spatial-gene-expression-liver-19t45ukapnybn0d90000), [visium-spatial-gene-expression-liver-0hom4h8tzut5tz7j0000](/datasets/md/c0.md#visium-spatial-gene-expression-liver-0hom4h8tzut5tz7j0000), [visium-spatial-gene-expression-liver-b0hegdyxbwumovfq0000](/datasets/md/a0.md#visium-spatial-gene-expression-liver-b0hegdyxbwumovfq0000), [visium-spatial-gene-expression-liver-louceykvpmtuwpte0000](/datasets/md/f4.md#visium-spatial-gene-expression-liver-louceykvpmtuwpte0000)

<a id="geo-gse208747"></a>
## Decoding spatial gene activity changes in multiple sclerosis lesion progression

- Page: /collections/geo-gse208747/
- Kind: comparison
- Datasets: 26
- Reference: PMID:39501035
- Design: Visium ST profiling was performed on snap-frozen samples containing 3 control grey matter samples (from 3 donors), 3 normal-appearing grey matter samples (from 3 donors), 5 subpial lesions (from 5 donors), 2 control white matter samples (from 2 donors), 3 normal-appearing white matter samples (from 3 donors), 4 active lesions (from 3 donors), 6 mixed active/inactive lesions (from 6 donors). GeoMx Digital Spatial Profiling was performed on FFPE samples containing 3 active lesions (from 2 donors) and 3 mixed active/inactive lesions (from 3 donors).  GeoMx Digital Spatial Profiling was performed on FFPE samples containing active (n=3 lesions from 2 donors) and act/inact (n=3 lesions from 3 donors) lesions.
- Members: [visium-spatial-gene-expression-white-matter-3vvks2k1dp7tdwuh0000](/datasets/md/8a.md#visium-spatial-gene-expression-white-matter-3vvks2k1dp7tdwuh0000), [visium-spatial-gene-expression-gray-matter-lymdxq4aqwkyqzfs0000](/datasets/md/f1.md#visium-spatial-gene-expression-gray-matter-lymdxq4aqwkyqzfs0000), [visium-spatial-gene-expression-white-matter-rlhw2hctl5tut1vf0000](/datasets/md/87.md#visium-spatial-gene-expression-white-matter-rlhw2hctl5tut1vf0000), [visium-spatial-gene-expression-white-matter-nn5iodeatwyjcbke0000](/datasets/md/6f.md#visium-spatial-gene-expression-white-matter-nn5iodeatwyjcbke0000), [visium-spatial-gene-expression-gray-matter-of9wjvfjtc4xvpeq0000](/datasets/md/6d.md#visium-spatial-gene-expression-gray-matter-of9wjvfjtc4xvpeq0000), [visium-spatial-gene-expression-gray-matter-3qwwhmw7xy4ib3x10000](/datasets/md/7f.md#visium-spatial-gene-expression-gray-matter-3qwwhmw7xy4ib3x10000), [visium-spatial-gene-expression-gray-matter-udl5xvmjegigebqh0000](/datasets/md/47.md#visium-spatial-gene-expression-gray-matter-udl5xvmjegigebqh0000), [visium-spatial-gene-expression-gray-matter-8p5ygyt8vilum8770000](/datasets/md/8d.md#visium-spatial-gene-expression-gray-matter-8p5ygyt8vilum8770000), [visium-spatial-gene-expression-gray-matter-3tfpulazwstt3khd0000](/datasets/md/76.md#visium-spatial-gene-expression-gray-matter-3tfpulazwstt3khd0000), [visium-spatial-gene-expression-white-matter-w0kwfnxxsu0pbqeg0000](/datasets/md/a9.md#visium-spatial-gene-expression-white-matter-w0kwfnxxsu0pbqeg0000), [visium-spatial-gene-expression-white-matter-kjnvqnhzin8zaflw0000](/datasets/md/7e.md#visium-spatial-gene-expression-white-matter-kjnvqnhzin8zaflw0000), [visium-spatial-gene-expression-white-matter-1n7ahbhfpmalwknt0000](/datasets/md/c1.md#visium-spatial-gene-expression-white-matter-1n7ahbhfpmalwknt0000), [visium-spatial-gene-expression-white-matter-qzah7kl3hkxo2ybb0000](/datasets/md/f3.md#visium-spatial-gene-expression-white-matter-qzah7kl3hkxo2ybb0000), [visium-spatial-gene-expression-gray-matter-ehxqpyyqajjr7sma0000](/datasets/md/5f.md#visium-spatial-gene-expression-gray-matter-ehxqpyyqajjr7sma0000), [visium-spatial-gene-expression-gray-matter-dij1d2nj99wc6jnu0000](/datasets/md/02.md#visium-spatial-gene-expression-gray-matter-dij1d2nj99wc6jnu0000), [visium-spatial-gene-expression-gray-matter-ak3ghcmhgsndhx160000](/datasets/md/9b.md#visium-spatial-gene-expression-gray-matter-ak3ghcmhgsndhx160000), [visium-spatial-gene-expression-gray-matter-6r8tuutzzw3ndbhy0000](/datasets/md/86.md#visium-spatial-gene-expression-gray-matter-6r8tuutzzw3ndbhy0000), [visium-spatial-gene-expression-gray-matter-lxhtcgsizicbe7qx0000](/datasets/md/be.md#visium-spatial-gene-expression-gray-matter-lxhtcgsizicbe7qx0000), [visium-spatial-gene-expression-white-matter-ukfhbmzug3x5goon0000](/datasets/md/49.md#visium-spatial-gene-expression-white-matter-ukfhbmzug3x5goon0000), [visium-spatial-gene-expression-white-matter-tbucfejxo3hes2rp0000](/datasets/md/d3.md#visium-spatial-gene-expression-white-matter-tbucfejxo3hes2rp0000), [visium-spatial-gene-expression-white-matter-gjwfqxkoinauad3b0000](/datasets/md/fe.md#visium-spatial-gene-expression-white-matter-gjwfqxkoinauad3b0000), [visium-spatial-gene-expression-white-matter-psokis2jhugb1cgg0000](/datasets/md/1b.md#visium-spatial-gene-expression-white-matter-psokis2jhugb1cgg0000), [visium-spatial-gene-expression-white-matter-j2tkx5mvjmzgjmle0000](/datasets/md/6e.md#visium-spatial-gene-expression-white-matter-j2tkx5mvjmzgjmle0000), [visium-spatial-gene-expression-white-matter-pmiz4bpokp6mntpu0000](/datasets/md/90.md#visium-spatial-gene-expression-white-matter-pmiz4bpokp6mntpu0000), [visium-spatial-gene-expression-white-matter-lp7gtldsb6qyylpn0000](/datasets/md/e3.md#visium-spatial-gene-expression-white-matter-lp7gtldsb6qyylpn0000), [visium-spatial-gene-expression-white-matter-n7aghbkpfbnfpyod0000](/datasets/md/43.md#visium-spatial-gene-expression-white-matter-n7aghbkpfbnfpyod0000)

<a id="geo-gse211895"></a>
## Assessment of Spatial Genomics for Oncology Discovery

- Page: /collections/geo-gse211895/
- Kind: other
- Datasets: 29
- Reference: PMID:36452860
- Design: Anna, Lyubetskaya
- Members: [visium-spatial-gene-expression-colon-ietk1elm2rrf9rcc0004](/datasets/md/b3.md#visium-spatial-gene-expression-colon-ietk1elm2rrf9rcc0004), [visium-spatial-gene-expression-colon-tjojrpblloz1mfhv0001](/datasets/md/5b.md#visium-spatial-gene-expression-colon-tjojrpblloz1mfhv0001), [visium-spatial-gene-expression-colon-trzjbynl7reu2wly0000](/datasets/md/f0.md#visium-spatial-gene-expression-colon-trzjbynl7reu2wly0000), [visium-spatial-gene-expression-colon-2xshoisc7jftkpnh0000](/datasets/md/05.md#visium-spatial-gene-expression-colon-2xshoisc7jftkpnh0000), [visium-spatial-gene-expression-colon-xlabzigzndcmtoxo0000](/datasets/md/a2.md#visium-spatial-gene-expression-colon-xlabzigzndcmtoxo0000), [visium-spatial-gene-expression-colon-9nf1a8zepcev4tfo0000](/datasets/md/e5.md#visium-spatial-gene-expression-colon-9nf1a8zepcev4tfo0000), [visium-spatial-gene-expression-colon-k2rcasidgpiea7lc0000](/datasets/md/d5.md#visium-spatial-gene-expression-colon-k2rcasidgpiea7lc0000), [visium-spatial-gene-expression-colon-kyx6xwuwbbtuj53y0000](/datasets/md/e3.md#visium-spatial-gene-expression-colon-kyx6xwuwbbtuj53y0000), [visium-spatial-gene-expression-colon-g1pbsodgttccm9dl0000](/datasets/md/de.md#visium-spatial-gene-expression-colon-g1pbsodgttccm9dl0000), [visium-spatial-gene-expression-colon-rlzpiiafj7uozfqp0000](/datasets/md/37.md#visium-spatial-gene-expression-colon-rlzpiiafj7uozfqp0000), [visium-spatial-gene-expression-colon-1eqdw2uoitdfbbsv0000](/datasets/md/40.md#visium-spatial-gene-expression-colon-1eqdw2uoitdfbbsv0000), [visium-spatial-gene-expression-colon-dzlccpf3fcwe8efs0000](/datasets/md/59.md#visium-spatial-gene-expression-colon-dzlccpf3fcwe8efs0000), [visium-spatial-gene-expression-colon-txgwltstj3gabcbn0000](/datasets/md/78.md#visium-spatial-gene-expression-colon-txgwltstj3gabcbn0000), [visium-spatial-gene-expression-colon-977npxf7pthtwh5e0000](/datasets/md/77.md#visium-spatial-gene-expression-colon-977npxf7pthtwh5e0000), [visium-spatial-gene-expression-colon-zjziu58s6z456ylz0000](/datasets/md/1b.md#visium-spatial-gene-expression-colon-zjziu58s6z456ylz0000), [visium-spatial-gene-expression-colon-vspeekhfta0ex1ei0000](/datasets/md/47.md#visium-spatial-gene-expression-colon-vspeekhfta0ex1ei0000), [visium-spatial-gene-expression-colon-i3xpnx5xptsdicqk0000](/datasets/md/94.md#visium-spatial-gene-expression-colon-i3xpnx5xptsdicqk0000), [visium-spatial-gene-expression-colon-vwuhmbina146mkdz0000](/datasets/md/bd.md#visium-spatial-gene-expression-colon-vwuhmbina146mkdz0000), [visium-spatial-gene-expression-colon-4gujjge32nuagqxc0000](/datasets/md/7b.md#visium-spatial-gene-expression-colon-4gujjge32nuagqxc0000), [visium-spatial-gene-expression-colon-j9wc47duzh1brggi0000](/datasets/md/11.md#visium-spatial-gene-expression-colon-j9wc47duzh1brggi0000), [visium-spatial-gene-expression-colon-bijymvesa5exnva50000](/datasets/md/20.md#visium-spatial-gene-expression-colon-bijymvesa5exnva50000), [visium-spatial-gene-expression-colon-fvh2y6gmuiitggvf0000](/datasets/md/00.md#visium-spatial-gene-expression-colon-fvh2y6gmuiitggvf0000), [visium-spatial-gene-expression-colon-hryzjbyxm1lvvuxm0000](/datasets/md/a6.md#visium-spatial-gene-expression-colon-hryzjbyxm1lvvuxm0000), [visium-spatial-gene-expression-colon-huwdxbaugd0exedw0000](/datasets/md/b7.md#visium-spatial-gene-expression-colon-huwdxbaugd0exedw0000), [visium-spatial-gene-expression-colon-fkh5owjmifgtkysu0000](/datasets/md/5e.md#visium-spatial-gene-expression-colon-fkh5owjmifgtkysu0000), [visium-spatial-gene-expression-colon-fsvbve8vt4tyabnl0000](/datasets/md/de.md#visium-spatial-gene-expression-colon-fsvbve8vt4tyabnl0000), [visium-spatial-gene-expression-colon-sc9yomtibitlhqtg0000](/datasets/md/62.md#visium-spatial-gene-expression-colon-sc9yomtibitlhqtg0000), [visium-spatial-gene-expression-colon-siekta8vpjna1fwg0000](/datasets/md/39.md#visium-spatial-gene-expression-colon-siekta8vpjna1fwg0000), [visium-spatial-gene-expression-colon-zqvmhzlwsfe16xye0000](/datasets/md/a0.md#visium-spatial-gene-expression-colon-zqvmhzlwsfe16xye0000)

<a id="geo-gse235742"></a>
## Spatial Transcriptomic profiling of day2 wounds and intact tissues of Hgfac WT and KO mice

- Page: /collections/geo-gse235742/
- Kind: comparison
- Datasets: 3
- Reference: PMID:37878672
- Design: Day2 colonic wounds and intact colon samples from Hgfac WT and KO mice embedded into O.C.T. were used for Visium spatial transcriptomics.
- Members: [visium-spatial-gene-expression-descending-colon-j8ctkkoyyskzany60000](/datasets/md/c5.md#visium-spatial-gene-expression-descending-colon-j8ctkkoyyskzany60000), [visium-spatial-gene-expression-descending-colon-mlpwbqbra3mejhhw0000](/datasets/md/c7.md#visium-spatial-gene-expression-descending-colon-mlpwbqbra3mejhhw0000), [visium-spatial-gene-expression-descending-colon-xkknbxelq4qjxfwg0000](/datasets/md/60.md#visium-spatial-gene-expression-descending-colon-xkknbxelq4qjxfwg0000)

<a id="geo-gse237183"></a>
## Integrative spatial analysis reveals a multi-layered organization of glioblastoma

- Page: /collections/geo-gse237183/
- Kind: replicates
- Datasets: 19
- Reference: PMID:38653236
- Design: 13 IDH-WT human glioblastoma samples spatially annotated by the surgeon during navigation-guided tumor resection and 6 IDH-mutant glioma samples profiled by 10X Visium spatial transcriptomics.
- Members: [visium-spatial-gene-expression-brain-pqmybrdq9pkyhzqf0000](/datasets/md/89.md#visium-spatial-gene-expression-brain-pqmybrdq9pkyhzqf0000), [visium-spatial-gene-expression-brain-d7z7v9uoyohd9s2j0000](/datasets/md/1f.md#visium-spatial-gene-expression-brain-d7z7v9uoyohd9s2j0000), [visium-spatial-gene-expression-brain-reqaf84ffpuza6iv0000](/datasets/md/a2.md#visium-spatial-gene-expression-brain-reqaf84ffpuza6iv0000), [visium-spatial-gene-expression-brain-tjndqzne82nyhfng0000](/datasets/md/5f.md#visium-spatial-gene-expression-brain-tjndqzne82nyhfng0000), [visium-spatial-gene-expression-brain-yqytzzaaqqc2m3oe0000](/datasets/md/ba.md#visium-spatial-gene-expression-brain-yqytzzaaqqc2m3oe0000), [visium-spatial-gene-expression-brain-kojhpvsqknnfrnh30000](/datasets/md/e1.md#visium-spatial-gene-expression-brain-kojhpvsqknnfrnh30000), [visium-spatial-gene-expression-brain-stmkg0mjfyrhi0lq0000](/datasets/md/8b.md#visium-spatial-gene-expression-brain-stmkg0mjfyrhi0lq0000), [visium-spatial-gene-expression-brain-f25habj1yalcofys0000](/datasets/md/97.md#visium-spatial-gene-expression-brain-f25habj1yalcofys0000), [visium-spatial-gene-expression-brain-81mbyehxsgtl2vkd0000](/datasets/md/d4.md#visium-spatial-gene-expression-brain-81mbyehxsgtl2vkd0000), [visium-spatial-gene-expression-brain-xf3szvh6qn1fztok0000](/datasets/md/61.md#visium-spatial-gene-expression-brain-xf3szvh6qn1fztok0000), [visium-spatial-gene-expression-brain-51qkye7vdblyferf0000](/datasets/md/27.md#visium-spatial-gene-expression-brain-51qkye7vdblyferf0000), [visium-spatial-gene-expression-brain-yaqozadyabouzbjh0000](/datasets/md/9f.md#visium-spatial-gene-expression-brain-yaqozadyabouzbjh0000), [visium-spatial-gene-expression-brain-2c1joliwdz97iz820000](/datasets/md/a3.md#visium-spatial-gene-expression-brain-2c1joliwdz97iz820000), [visium-spatial-gene-expression-brain-yeggv1y41fvuiquw0000](/datasets/md/44.md#visium-spatial-gene-expression-brain-yeggv1y41fvuiquw0000), [visium-spatial-gene-expression-brain-5j4avpldmsegsady0000](/datasets/md/74.md#visium-spatial-gene-expression-brain-5j4avpldmsegsady0000), [visium-spatial-gene-expression-brain-wg9goi6upgvhuuvu0000](/datasets/md/81.md#visium-spatial-gene-expression-brain-wg9goi6upgvhuuvu0000), [visium-spatial-gene-expression-brain-810btrgnbqffuzxu0000](/datasets/md/af.md#visium-spatial-gene-expression-brain-810btrgnbqffuzxu0000), [visium-spatial-gene-expression-brain-l39so8cbeobopaa20000](/datasets/md/12.md#visium-spatial-gene-expression-brain-l39so8cbeobopaa20000), [visium-spatial-gene-expression-brain-up24fz9ioxm5tgji0000](/datasets/md/85.md#visium-spatial-gene-expression-brain-up24fz9ioxm5tgji0000)

<a id="geo-gse242352"></a>
## Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas

- Page: /collections/geo-gse242352/
- Kind: other
- Datasets: 17
- Reference: PMID:40514380
- Design: Eleven surgically-derived gliomas of varied pathology and molecular phenotype were analyzed using the 10X Genomics Visium spatial transcriptomics protocol. Available data includes processed output files from the 10X Genomics spaceranger bioinformatic pipeline.  Six surgically-derived FFPE glioblastoma tissues were analyzed using the 10X Genomics Visium CytAssist Spatial Gene Expression for FFPE protocol. Available data includes processed output files from the 10X Genomics spaceranger bioinformatic pipeline.  ----------------------------- Authors state "Only processed data is included in this submission due to privacy concerns."
- Members: [visium-spatial-gene-expression-brain-r8xwxa9u0cuolzmh0000](/datasets/md/74.md#visium-spatial-gene-expression-brain-r8xwxa9u0cuolzmh0000), [visium-spatial-gene-expression-brain-xbgeskla5ji1r9nr0000](/datasets/md/43.md#visium-spatial-gene-expression-brain-xbgeskla5ji1r9nr0000), [visium-spatial-gene-expression-brain-sncjupjszvl7yzzy0000](/datasets/md/55.md#visium-spatial-gene-expression-brain-sncjupjszvl7yzzy0000), [visium-spatial-gene-expression-brain-q8ipsfqbj2rc3ytz0000](/datasets/md/f7.md#visium-spatial-gene-expression-brain-q8ipsfqbj2rc3ytz0000), [visium-spatial-gene-expression-brain-iuo0atjrvsswy7cb0000](/datasets/md/61.md#visium-spatial-gene-expression-brain-iuo0atjrvsswy7cb0000), [visium-spatial-gene-expression-brain-cw7ovjqvam8ljx1o0000](/datasets/md/0f.md#visium-spatial-gene-expression-brain-cw7ovjqvam8ljx1o0000), [visium-spatial-gene-expression-brain-giubfucetr3nqviz0000](/datasets/md/fd.md#visium-spatial-gene-expression-brain-giubfucetr3nqviz0000), [visium-spatial-gene-expression-brain-knfefxc24u7bzq6j0000](/datasets/md/35.md#visium-spatial-gene-expression-brain-knfefxc24u7bzq6j0000), [visium-spatial-gene-expression-brain-o7c2aoovvbtxrp0t0000](/datasets/md/4b.md#visium-spatial-gene-expression-brain-o7c2aoovvbtxrp0t0000), [visium-spatial-gene-expression-brain-wkepdwwslxohp0k50000](/datasets/md/a8.md#visium-spatial-gene-expression-brain-wkepdwwslxohp0k50000), [visium-spatial-gene-expression-brain-4gcjpnqqplwip7et0000](/datasets/md/df.md#visium-spatial-gene-expression-brain-4gcjpnqqplwip7et0000), [visium-spatial-gene-expression-brain-3u2oem7ttrci5gcw0000](/datasets/md/5a.md#visium-spatial-gene-expression-brain-3u2oem7ttrci5gcw0000), [visium-spatial-gene-expression-brain-8vcfqfbzu42p46xp0000](/datasets/md/85.md#visium-spatial-gene-expression-brain-8vcfqfbzu42p46xp0000), [visium-spatial-gene-expression-brain-dmzw6weybcy5nju70000](/datasets/md/4d.md#visium-spatial-gene-expression-brain-dmzw6weybcy5nju70000), [visium-spatial-gene-expression-brain-kcrzibs4gmdcxlrd0000](/datasets/md/e7.md#visium-spatial-gene-expression-brain-kcrzibs4gmdcxlrd0000), [visium-spatial-gene-expression-brain-smjhnictxkugpbtv0000](/datasets/md/a7.md#visium-spatial-gene-expression-brain-smjhnictxkugpbtv0000), [visium-spatial-gene-expression-brain-bxxazoakeyo47rdu0000](/datasets/md/a6.md#visium-spatial-gene-expression-brain-bxxazoakeyo47rdu0000)

<a id="geo-gse249121"></a>
## DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics]

- Page: /collections/geo-gse249121/
- Kind: time course
- Datasets: 20
- Reference: PMID:40156071
- Design: Normal pancreata and pancreata undergoing acinar-ductal metaplasia were analyzed using spatial transcriptomics.
- Members: [visium-spatial-gene-expression-pancreas-rl0kmc6kusidvqnd0000](/datasets/md/73.md#visium-spatial-gene-expression-pancreas-rl0kmc6kusidvqnd0000), [visium-spatial-gene-expression-pancreas-91gxsyaeatdn8ngj0000](/datasets/md/1f.md#visium-spatial-gene-expression-pancreas-91gxsyaeatdn8ngj0000), [visium-spatial-gene-expression-pancreas-n1nppi3jofmxeoga0000](/datasets/md/6e.md#visium-spatial-gene-expression-pancreas-n1nppi3jofmxeoga0000), [visium-spatial-gene-expression-pancreas-irvqjbdaxfd9iqzs0000](/datasets/md/a2.md#visium-spatial-gene-expression-pancreas-irvqjbdaxfd9iqzs0000), [visium-spatial-gene-expression-pancreas-yw8ktsqt2yluzkok0000](/datasets/md/cf.md#visium-spatial-gene-expression-pancreas-yw8ktsqt2yluzkok0000), [visium-spatial-gene-expression-pancreas-mzhkfwwedgdhahh90000](/datasets/md/b8.md#visium-spatial-gene-expression-pancreas-mzhkfwwedgdhahh90000), [visium-spatial-gene-expression-pancreas-onylj3bruxhy9wos0000](/datasets/md/9f.md#visium-spatial-gene-expression-pancreas-onylj3bruxhy9wos0000), [visium-spatial-gene-expression-pancreas-uwhupjlkdj1pvjub0000](/datasets/md/87.md#visium-spatial-gene-expression-pancreas-uwhupjlkdj1pvjub0000), [visium-spatial-gene-expression-pancreas-jowxkzxscxmb9sr30000](/datasets/md/5d.md#visium-spatial-gene-expression-pancreas-jowxkzxscxmb9sr30000), [visium-spatial-gene-expression-pancreas-h0ycqvbhqnjegiyg0000](/datasets/md/05.md#visium-spatial-gene-expression-pancreas-h0ycqvbhqnjegiyg0000), [visium-spatial-gene-expression-pancreas-ysvjb0yxcwtdbhf50000](/datasets/md/cd.md#visium-spatial-gene-expression-pancreas-ysvjb0yxcwtdbhf50000), [visium-spatial-gene-expression-pancreas-v1lu1x65oy5o8kyj0000](/datasets/md/6c.md#visium-spatial-gene-expression-pancreas-v1lu1x65oy5o8kyj0000), [visium-spatial-gene-expression-pancreas-yy20zyja4hzlwvha0000](/datasets/md/fa.md#visium-spatial-gene-expression-pancreas-yy20zyja4hzlwvha0000), [visium-spatial-gene-expression-pancreas-nm0x8nlg0phqvc6y0000](/datasets/md/0d.md#visium-spatial-gene-expression-pancreas-nm0x8nlg0phqvc6y0000), [visium-spatial-gene-expression-pancreas-d4mgr3ptmx1yftdt0000](/datasets/md/f7.md#visium-spatial-gene-expression-pancreas-d4mgr3ptmx1yftdt0000), [visium-spatial-gene-expression-pancreas-itqdlevmbniiwzen0000](/datasets/md/06.md#visium-spatial-gene-expression-pancreas-itqdlevmbniiwzen0000), [visium-spatial-gene-expression-pancreas-ecvmqodxdwzmnmtf0000](/datasets/md/1f.md#visium-spatial-gene-expression-pancreas-ecvmqodxdwzmnmtf0000), [visium-spatial-gene-expression-pancreas-b9ybwe3oat69q15f0000](/datasets/md/6c.md#visium-spatial-gene-expression-pancreas-b9ybwe3oat69q15f0000), [visium-spatial-gene-expression-pancreas-z98zwlnvbgppshzb0000](/datasets/md/78.md#visium-spatial-gene-expression-pancreas-z98zwlnvbgppshzb0000), [visium-spatial-gene-expression-pancreas-kp3pvnuhx3b1irwu0000](/datasets/md/d6.md#visium-spatial-gene-expression-pancreas-kp3pvnuhx3b1irwu0000)

<a id="geo-gse253520"></a>
## Mouse uterine gene expressions during peri-implantation period

- Page: /collections/geo-gse253520/
- Kind: other
- Datasets: 3
- Reference: PMID:39377223
- Design: The day when the vaginal plug was detected was considered day 1 of pregnancy. Pregnant mice were euthanized by cervical dislocation on designated days of pregnancy for the evaluation of pregnancy phenotypes and sample collection. On day 4, one uterine horn was flushed with saline to confirm the presence of blastocysts. Embryo attachment sites were observed as blue bands soon after intravenous injection of 1% solution of Chicago blue dye (Sigma-Aldrich) in saline on day6. Collected tissues were snap-frozen. Frozen sections (10 μm) were mounted on gene expression slides and sent to KOTAI Biotechnologies for subsequent procedures. After reaction with Proteinase K for 40 min, the sections were hybridized with spatial tags on the slides and reverse-transcribed in situ. The synthesized cDNAs were subjected to RNA-sequencing using DNBseq (MGI), producing 300 million reads/sample.
- Members: [visium-spatial-gene-expression-uterus-n0e9xdiefqpvspn60000](/datasets/md/72.md#visium-spatial-gene-expression-uterus-n0e9xdiefqpvspn60000), [visium-spatial-gene-expression-uterus-fuifx4aogi4uegys0001](/datasets/md/67.md#visium-spatial-gene-expression-uterus-fuifx4aogi4uegys0001), [visium-spatial-gene-expression-uterus-lhbuzlbb3lrnhavu0000](/datasets/md/48.md#visium-spatial-gene-expression-uterus-lhbuzlbb3lrnhavu0000)

<a id="geo-gse253850"></a>
## Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover [Spatial Transcriptomics]

- Page: /collections/geo-gse253850/
- Kind: other
- Datasets: 4
- Reference: PMID:42711427
- Design: We isolated biopsies from dissected adrenal glands from human adults and subjected them to spatial transcriptomics sequencing using 10x Visium approach. Human adrenals (one gland per donor) were excised simultaneously with explantation of kidneys from deceased organ donors. Human raw data fastq files are available through EGA controlled access https://ega-archive.org/dacs/EGAC00001003383
- Members: [visium-spatial-gene-expression-adrenal-gland-6unmzyymhd1obijk0000](/datasets/md/ab.md#visium-spatial-gene-expression-adrenal-gland-6unmzyymhd1obijk0000), [visium-spatial-gene-expression-adrenal-gland-vztfisbkewytqwrd0000](/datasets/md/e6.md#visium-spatial-gene-expression-adrenal-gland-vztfisbkewytqwrd0000), [visium-spatial-gene-expression-adrenal-gland-hxhlbrk7kty395cg0000](/datasets/md/d6.md#visium-spatial-gene-expression-adrenal-gland-hxhlbrk7kty395cg0000), [visium-spatial-gene-expression-adrenal-gland-zrimcomj5ztlj7ne0000](/datasets/md/23.md#visium-spatial-gene-expression-adrenal-gland-zrimcomj5ztlj7ne0000)

<a id="geo-gse254161"></a>
## Dynamic fibroblast-immune interactions shape recovery after brain injury [Visium]

- Page: /collections/geo-gse254161/
- Kind: time course
- Datasets: 4
- Reference: PMID:40903576
- Design: 10um cortical tissue slices including PT lesions were analyzed at rest, 2dpi, 7dpi, and 21dpi. 2 tissue slices were mounted per capture area, with 1 mouse (1 slice/mouse) analyzed at rest and 2dpi, and 2 mice (1 slice/mouse) analyzed at 7dpi and 21dpi (2 additional 21dpi mice, Cthrc1(creER); R26(DTA),  discarded after initial clustering due to undetectable deletion).
- Members: [visium-spatial-gene-expression-brain-iz94jeypzrkso0gd0000](/datasets/md/1a.md#visium-spatial-gene-expression-brain-iz94jeypzrkso0gd0000), [visium-spatial-gene-expression-brain-9qsmfnbj84nlxpo80000](/datasets/md/0c.md#visium-spatial-gene-expression-brain-9qsmfnbj84nlxpo80000), [visium-spatial-gene-expression-brain-arju17dz1qxmskr00000](/datasets/md/03.md#visium-spatial-gene-expression-brain-arju17dz1qxmskr00000), [visium-spatial-gene-expression-brain-ck3ogyljopesp8gi0000](/datasets/md/07.md#visium-spatial-gene-expression-brain-ck3ogyljopesp8gi0000)

<a id="geo-gse273439"></a>
## Extraction of a Stromal Metastatic Gene Signature in Breast Cancer via Spatial Profiling

- Page: /collections/geo-gse273439/
- Kind: other
- Datasets: 4
- Reference: PMID:40065328
- Design: 1x105 4T1 cells were resuspended in PBS and injected in the mammary fat pad of 8-week- old BALB/c mice. After 28 days from the inoculum, mice were sacrificed, and tumors and lungs were collected for histopathologicand spatial transcriptomical analyses.  Four micrometer-thick FFPE sections  were sliced and mounted on a Visium glass slide before undergoing HE staining.
- Members: [visium-spatial-gene-expression-mammary-gland-eo6p8kxzgwakvz9f0000](/datasets/md/89.md#visium-spatial-gene-expression-mammary-gland-eo6p8kxzgwakvz9f0000), [visium-spatial-gene-expression-lung-nuxkoim4vvswegtd0000](/datasets/md/74.md#visium-spatial-gene-expression-lung-nuxkoim4vvswegtd0000), [visium-spatial-gene-expression-lung-qnyndl8lw6zqnifp0000](/datasets/md/2f.md#visium-spatial-gene-expression-lung-qnyndl8lw6zqnifp0000), [visium-spatial-gene-expression-mammary-gland-xk5evtzrrbkc2tcf0000](/datasets/md/8e.md#visium-spatial-gene-expression-mammary-gland-xk5evtzrrbkc2tcf0000)

<a id="geo-gse274059"></a>
## Hif2α–Lox mediated collagen remodelling is crucial for embryo invasion

- Page: /collections/geo-gse274059/
- Kind: comparison
- Datasets: 6
- Reference: PMID:41803091
- Design: The day when the vaginal plug was detected was considered day 1 of pregnancy. Pregnant mice were euthanized by cervical dislocation on designated days of pregnancy for the evaluation of pregnancy phenotypes and sample collection. Embryo attachment sites were observed as blue bands soon after intravenous injection of 1% solution of Chicago blue dye (Sigma-Aldrich) in saline on day6. Collected tissues were snap-frozen. Frozen sections (10 μm) were mounted on gene expression slides and sent to KOTAI Biotechnologies for subsequent procedures. After reaction with Proteinase K for 30 min, the sections were hybridized with spatial tags on the slides and reverse-transcribed in situ. The synthesized cDNAs were subjected to RNA-sequencing using DNBseq (MGI), producing 300 million reads/sample.
- Members: [visium-spatial-gene-expression-uterus-e3lbjtzs82sldiwp0000](/datasets/md/34.md#visium-spatial-gene-expression-uterus-e3lbjtzs82sldiwp0000), [visium-spatial-gene-expression-uterus-kedngil2hv4p4e8y0000](/datasets/md/fa.md#visium-spatial-gene-expression-uterus-kedngil2hv4p4e8y0000), [visium-spatial-gene-expression-uterus-x5lfxppglwja4pdt0000](/datasets/md/34.md#visium-spatial-gene-expression-uterus-x5lfxppglwja4pdt0000), [visium-spatial-gene-expression-uterus-k6yredxwawzlmeyj0000](/datasets/md/92.md#visium-spatial-gene-expression-uterus-k6yredxwawzlmeyj0000), [visium-spatial-gene-expression-uterus-hiazuqgurnbuci1d0000](/datasets/md/35.md#visium-spatial-gene-expression-uterus-hiazuqgurnbuci1d0000), [visium-spatial-gene-expression-uterus-ox3jguqiw92qoeqr0000](/datasets/md/21.md#visium-spatial-gene-expression-uterus-ox3jguqiw92qoeqr0000)

<a id="geo-gse279405"></a>
## Spatial transcriptomical analysis of livers from patients with COVID19

- Page: /collections/geo-gse279405/
- Kind: comparison
- Datasets: 3
- Reference: PMID:39709771
- Design: 10x Genomics Visium CytAssist Spatial Gene Assay was designed to analyze viral RNA and mRNA isolated from FFPE liver tissue sections from patients with COVID19Spatial Barcodes are used to associate the reads back to the tissue section images for spatial mapping of gene expression. Figure images were generated via Loupe Browser 6.5.0 downloaded from the website of 10x Genomics Inc.
- Members: [visium-spatial-gene-expression-liver-zoy3vy5wcohj82gc0000](/datasets/md/3e.md#visium-spatial-gene-expression-liver-zoy3vy5wcohj82gc0000), [visium-spatial-gene-expression-liver-ywopfxojs1fdzts40000](/datasets/md/8e.md#visium-spatial-gene-expression-liver-ywopfxojs1fdzts40000), [visium-spatial-gene-expression-liver-rf35rfn5wp76f96x0000](/datasets/md/bc.md#visium-spatial-gene-expression-liver-rf35rfn5wp76f96x0000)

<a id="geo-gse279507"></a>
## Mapping the Evolution of Acinar cell derived Pancreatic Preneoplastic Lesions in a Mouse Model: A Detailed Transcriptomic and Pathological Characterization

- Page: /collections/geo-gse279507/
- Kind: other
- Datasets: 5
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE279507
- Design: The pancreata of five p48Cre/+-LSL-KrasG12D/+ mice (age 6 months) were analyzed using combining spatial transcriptomics and pathological annotations of pancreatic preneoplastic lesions.
- Members: [visium-spatial-gene-expression-pancreas-vqvlyypm00z1clh20000](/datasets/md/77.md#visium-spatial-gene-expression-pancreas-vqvlyypm00z1clh20000), [visium-spatial-gene-expression-pancreas-lrf9eixnfp0fxwhk0000](/datasets/md/e1.md#visium-spatial-gene-expression-pancreas-lrf9eixnfp0fxwhk0000), [visium-spatial-gene-expression-pancreas-agjftf27s6aacb760000](/datasets/md/b7.md#visium-spatial-gene-expression-pancreas-agjftf27s6aacb760000), [visium-spatial-gene-expression-pancreas-hhj864uxzzvcclwt0000](/datasets/md/1b.md#visium-spatial-gene-expression-pancreas-hhj864uxzzvcclwt0000), [visium-spatial-gene-expression-pancreas-3p6kdgqmhae4ugnj0000](/datasets/md/a5.md#visium-spatial-gene-expression-pancreas-3p6kdgqmhae4ugnj0000)

<a id="geo-gse282302"></a>
## In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics]

- Page: /collections/geo-gse282302/
- Kind: other
- Datasets: 108
- Reference: PMID:41533516
- Design: PDAC tumors, resected following FOLFIRINOX neoadjuvant treatment, were FFPE embedded, and sectioned for spatial transcriptomic analysis using Visium for FFPE (human probeset v2)
- Members: [visium-spatial-gene-expression-pancreas-vjsgekycwsgu3qdo0001](/datasets/md/fa.md#visium-spatial-gene-expression-pancreas-vjsgekycwsgu3qdo0001), [visium-spatial-gene-expression-pancreas-uupv8vnbfm82psiu0000](/datasets/md/d3.md#visium-spatial-gene-expression-pancreas-uupv8vnbfm82psiu0000), [visium-spatial-gene-expression-pancreas-2dgaq4scna2warfz0000](/datasets/md/18.md#visium-spatial-gene-expression-pancreas-2dgaq4scna2warfz0000), [visium-spatial-gene-expression-pancreas-ffw2qms8x8xlfugy0000](/datasets/md/33.md#visium-spatial-gene-expression-pancreas-ffw2qms8x8xlfugy0000), [visium-spatial-gene-expression-pancreas-42vpalrcqgrxizkf0000](/datasets/md/a6.md#visium-spatial-gene-expression-pancreas-42vpalrcqgrxizkf0000), [visium-spatial-gene-expression-pancreas-hodmvoynfahbwd1x0000](/datasets/md/77.md#visium-spatial-gene-expression-pancreas-hodmvoynfahbwd1x0000), [visium-spatial-gene-expression-pancreas-9qca7dzpwzfwxrx40000](/datasets/md/b5.md#visium-spatial-gene-expression-pancreas-9qca7dzpwzfwxrx40000), [visium-spatial-gene-expression-pancreas-ynm9xhebp7jq0tym0000](/datasets/md/fa.md#visium-spatial-gene-expression-pancreas-ynm9xhebp7jq0tym0000), [visium-spatial-gene-expression-pancreas-5klpbf9tzxixxqyu0000](/datasets/md/d0.md#visium-spatial-gene-expression-pancreas-5klpbf9tzxixxqyu0000), [visium-spatial-gene-expression-pancreas-ceucgr2hwfdotyu20000](/datasets/md/9d.md#visium-spatial-gene-expression-pancreas-ceucgr2hwfdotyu20000), [visium-spatial-gene-expression-pancreas-qwgemit8qvdbdj6v0000](/datasets/md/8e.md#visium-spatial-gene-expression-pancreas-qwgemit8qvdbdj6v0000), [visium-spatial-gene-expression-pancreas-ypavqkcx2lwqlxvb0000](/datasets/md/72.md#visium-spatial-gene-expression-pancreas-ypavqkcx2lwqlxvb0000), [visium-spatial-gene-expression-pancreas-gv6pix0y5elknwpg0000](/datasets/md/3d.md#visium-spatial-gene-expression-pancreas-gv6pix0y5elknwpg0000), [visium-spatial-gene-expression-pancreas-tinuui0pglxrdve40000](/datasets/md/5b.md#visium-spatial-gene-expression-pancreas-tinuui0pglxrdve40000), [visium-spatial-gene-expression-pancreas-rwt4jgptcapzz9ih0000](/datasets/md/b6.md#visium-spatial-gene-expression-pancreas-rwt4jgptcapzz9ih0000), [visium-spatial-gene-expression-pancreas-abqbdisxkatlirfa0000](/datasets/md/04.md#visium-spatial-gene-expression-pancreas-abqbdisxkatlirfa0000), [visium-spatial-gene-expression-pancreas-t0tffdlcnloylgeb0000](/datasets/md/b8.md#visium-spatial-gene-expression-pancreas-t0tffdlcnloylgeb0000), [visium-spatial-gene-expression-pancreas-gezjcnfjzvex1g320000](/datasets/md/63.md#visium-spatial-gene-expression-pancreas-gezjcnfjzvex1g320000), [visium-spatial-gene-expression-pancreas-0877bxvk1afupod90000](/datasets/md/83.md#visium-spatial-gene-expression-pancreas-0877bxvk1afupod90000), [visium-spatial-gene-expression-pancreas-zwelgt6jezsefwn30000](/datasets/md/81.md#visium-spatial-gene-expression-pancreas-zwelgt6jezsefwn30000), [visium-spatial-gene-expression-pancreas-e8g83mabwgpiwvq60000](/datasets/md/fc.md#visium-spatial-gene-expression-pancreas-e8g83mabwgpiwvq60000), [visium-spatial-gene-expression-pancreas-vttfwhsfnvvlhonl0000](/datasets/md/91.md#visium-spatial-gene-expression-pancreas-vttfwhsfnvvlhonl0000), [visium-spatial-gene-expression-pancreas-bt2vgaau30qqwswc0000](/datasets/md/d8.md#visium-spatial-gene-expression-pancreas-bt2vgaau30qqwswc0000), [visium-spatial-gene-expression-pancreas-pb3c80s3cyb70vtq0000](/datasets/md/f4.md#visium-spatial-gene-expression-pancreas-pb3c80s3cyb70vtq0000), [visium-spatial-gene-expression-pancreas-slppxnp62grplnkh0000](/datasets/md/a3.md#visium-spatial-gene-expression-pancreas-slppxnp62grplnkh0000), [visium-spatial-gene-expression-pancreas-rh7go22rezbjb1he0000](/datasets/md/b3.md#visium-spatial-gene-expression-pancreas-rh7go22rezbjb1he0000), [visium-spatial-gene-expression-pancreas-mqdjarrwvshv2nvq0000](/datasets/md/f7.md#visium-spatial-gene-expression-pancreas-mqdjarrwvshv2nvq0000), [visium-spatial-gene-expression-pancreas-ogmdbe16hi7cq9ty0000](/datasets/md/ea.md#visium-spatial-gene-expression-pancreas-ogmdbe16hi7cq9ty0000), [visium-spatial-gene-expression-pancreas-0fngowef8xcnfan30000](/datasets/md/2b.md#visium-spatial-gene-expression-pancreas-0fngowef8xcnfan30000), [visium-spatial-gene-expression-pancreas-l2zffohzrxom077e0000](/datasets/md/a0.md#visium-spatial-gene-expression-pancreas-l2zffohzrxom077e0000), [visium-spatial-gene-expression-pancreas-vfm7asgvy9x6ieqr0000](/datasets/md/63.md#visium-spatial-gene-expression-pancreas-vfm7asgvy9x6ieqr0000), [visium-spatial-gene-expression-pancreas-jndqtse2oem7xtuz0000](/datasets/md/4c.md#visium-spatial-gene-expression-pancreas-jndqtse2oem7xtuz0000), [visium-spatial-gene-expression-pancreas-coilrua1uranw5nk0000](/datasets/md/7f.md#visium-spatial-gene-expression-pancreas-coilrua1uranw5nk0000), [visium-spatial-gene-expression-pancreas-8rhw6jtzgcdrvwsy0000](/datasets/md/ee.md#visium-spatial-gene-expression-pancreas-8rhw6jtzgcdrvwsy0000), [visium-spatial-gene-expression-pancreas-dkf89gq1ysxlyzmh0000](/datasets/md/52.md#visium-spatial-gene-expression-pancreas-dkf89gq1ysxlyzmh0000), [visium-spatial-gene-expression-pancreas-qmlpjmwswdxw6y9b0000](/datasets/md/bf.md#visium-spatial-gene-expression-pancreas-qmlpjmwswdxw6y9b0000), [visium-spatial-gene-expression-pancreas-fy05tmljr1vmkecj0000](/datasets/md/39.md#visium-spatial-gene-expression-pancreas-fy05tmljr1vmkecj0000), [visium-spatial-gene-expression-pancreas-fj4mbh79sliyd9sd0000](/datasets/md/4e.md#visium-spatial-gene-expression-pancreas-fj4mbh79sliyd9sd0000), [visium-spatial-gene-expression-pancreas-tzzwage81uejppiy0000](/datasets/md/40.md#visium-spatial-gene-expression-pancreas-tzzwage81uejppiy0000), [visium-spatial-gene-expression-pancreas-qjdjfbjkkbcp2rhw0000](/datasets/md/93.md#visium-spatial-gene-expression-pancreas-qjdjfbjkkbcp2rhw0000), [visium-spatial-gene-expression-pancreas-wgmz1do2ddktlh3w0000](/datasets/md/6a.md#visium-spatial-gene-expression-pancreas-wgmz1do2ddktlh3w0000), [visium-spatial-gene-expression-pancreas-ho4q0smsdyfy2nf20000](/datasets/md/52.md#visium-spatial-gene-expression-pancreas-ho4q0smsdyfy2nf20000), [visium-spatial-gene-expression-pancreas-zs83nbq2kzboj0at0000](/datasets/md/9e.md#visium-spatial-gene-expression-pancreas-zs83nbq2kzboj0at0000), [visium-spatial-gene-expression-pancreas-sqww6mawks1bybdh0000](/datasets/md/9f.md#visium-spatial-gene-expression-pancreas-sqww6mawks1bybdh0000), [visium-spatial-gene-expression-pancreas-9tctczmfscsl0kd90000](/datasets/md/98.md#visium-spatial-gene-expression-pancreas-9tctczmfscsl0kd90000), [visium-spatial-gene-expression-pancreas-o3uuba9fu5qf6wss0000](/datasets/md/86.md#visium-spatial-gene-expression-pancreas-o3uuba9fu5qf6wss0000), [visium-spatial-gene-expression-pancreas-eiozgdmf4lwfkr9h0000](/datasets/md/4b.md#visium-spatial-gene-expression-pancreas-eiozgdmf4lwfkr9h0000), [visium-spatial-gene-expression-pancreas-nzpeyva07ibvlrq10000](/datasets/md/b8.md#visium-spatial-gene-expression-pancreas-nzpeyva07ibvlrq10000), [visium-spatial-gene-expression-pancreas-1lxsactbkz15cjyj0000](/datasets/md/ca.md#visium-spatial-gene-expression-pancreas-1lxsactbkz15cjyj0000), [visium-spatial-gene-expression-pancreas-8onqtvljuzcpo8dh0000](/datasets/md/6b.md#visium-spatial-gene-expression-pancreas-8onqtvljuzcpo8dh0000), [visium-spatial-gene-expression-pancreas-vr79j0f7xzqmsvro0000](/datasets/md/02.md#visium-spatial-gene-expression-pancreas-vr79j0f7xzqmsvro0000), [visium-spatial-gene-expression-pancreas-aevyp2ewmzk66r5t0000](/datasets/md/2c.md#visium-spatial-gene-expression-pancreas-aevyp2ewmzk66r5t0000), [visium-spatial-gene-expression-pancreas-0ozkzzcwgdkelfdg0000](/datasets/md/b9.md#visium-spatial-gene-expression-pancreas-0ozkzzcwgdkelfdg0000), [visium-spatial-gene-expression-pancreas-icwsh6s4vbigfdtw0000](/datasets/md/5a.md#visium-spatial-gene-expression-pancreas-icwsh6s4vbigfdtw0000), [visium-spatial-gene-expression-pancreas-l2p8xq6udeirtam50000](/datasets/md/0e.md#visium-spatial-gene-expression-pancreas-l2p8xq6udeirtam50000), [visium-spatial-gene-expression-pancreas-sxc8kstm4h6l7vvx0000](/datasets/md/d4.md#visium-spatial-gene-expression-pancreas-sxc8kstm4h6l7vvx0000), [visium-spatial-gene-expression-pancreas-4bqmpsqb6xo8dpvu0000](/datasets/md/fe.md#visium-spatial-gene-expression-pancreas-4bqmpsqb6xo8dpvu0000), [visium-spatial-gene-expression-pancreas-hjfg6eqkr8okvkom0000](/datasets/md/9d.md#visium-spatial-gene-expression-pancreas-hjfg6eqkr8okvkom0000), [visium-spatial-gene-expression-pancreas-drvrg8fev0wysuwf0000](/datasets/md/88.md#visium-spatial-gene-expression-pancreas-drvrg8fev0wysuwf0000), [visium-spatial-gene-expression-pancreas-hd3xfywtqkhojj3d0000](/datasets/md/dd.md#visium-spatial-gene-expression-pancreas-hd3xfywtqkhojj3d0000), [visium-spatial-gene-expression-pancreas-0fpfb3kkbflq5fnx0000](/datasets/md/bf.md#visium-spatial-gene-expression-pancreas-0fpfb3kkbflq5fnx0000), [visium-spatial-gene-expression-pancreas-wwzjrevxy5jxvydp0000](/datasets/md/a5.md#visium-spatial-gene-expression-pancreas-wwzjrevxy5jxvydp0000), [visium-spatial-gene-expression-pancreas-6ceillmwfqg83yhm0000](/datasets/md/d2.md#visium-spatial-gene-expression-pancreas-6ceillmwfqg83yhm0000), [visium-spatial-gene-expression-pancreas-xhaf3g79wth4wxxl0000](/datasets/md/3c.md#visium-spatial-gene-expression-pancreas-xhaf3g79wth4wxxl0000), [visium-spatial-gene-expression-pancreas-srvn5yuqvbfymrhl0000](/datasets/md/5c.md#visium-spatial-gene-expression-pancreas-srvn5yuqvbfymrhl0000), [visium-spatial-gene-expression-pancreas-oxnojdpp5douhclz0000](/datasets/md/2f.md#visium-spatial-gene-expression-pancreas-oxnojdpp5douhclz0000), [visium-spatial-gene-expression-pancreas-tbbsm1soomhrtijf0000](/datasets/md/5a.md#visium-spatial-gene-expression-pancreas-tbbsm1soomhrtijf0000), [visium-spatial-gene-expression-pancreas-v6gwkkib6bljbbos0000](/datasets/md/5e.md#visium-spatial-gene-expression-pancreas-v6gwkkib6bljbbos0000), [visium-spatial-gene-expression-pancreas-7swmwwovspqznsxl0000](/datasets/md/17.md#visium-spatial-gene-expression-pancreas-7swmwwovspqznsxl0000), [visium-spatial-gene-expression-pancreas-svyawysdvwancta00000](/datasets/md/96.md#visium-spatial-gene-expression-pancreas-svyawysdvwancta00000), [visium-spatial-gene-expression-pancreas-fzbvdxo9fcefqu5r0000](/datasets/md/cd.md#visium-spatial-gene-expression-pancreas-fzbvdxo9fcefqu5r0000), [visium-spatial-gene-expression-pancreas-8mop4qypy4mbwtsx0000](/datasets/md/7f.md#visium-spatial-gene-expression-pancreas-8mop4qypy4mbwtsx0000), [visium-spatial-gene-expression-pancreas-hlyd1b92aiqqhl9e0000](/datasets/md/f2.md#visium-spatial-gene-expression-pancreas-hlyd1b92aiqqhl9e0000), [visium-spatial-gene-expression-pancreas-pd8fkfff8dviq6xg0000](/datasets/md/07.md#visium-spatial-gene-expression-pancreas-pd8fkfff8dviq6xg0000), [visium-spatial-gene-expression-pancreas-zvl8zzcnf6oo8gai0000](/datasets/md/07.md#visium-spatial-gene-expression-pancreas-zvl8zzcnf6oo8gai0000), [visium-spatial-gene-expression-pancreas-4k3qpb7ptfp5g4ic0000](/datasets/md/09.md#visium-spatial-gene-expression-pancreas-4k3qpb7ptfp5g4ic0000), [visium-spatial-gene-expression-pancreas-0zd7uqdyimlskwgm0000](/datasets/md/34.md#visium-spatial-gene-expression-pancreas-0zd7uqdyimlskwgm0000), [visium-spatial-gene-expression-pancreas-udqagwcvjwd84pxo0000](/datasets/md/b2.md#visium-spatial-gene-expression-pancreas-udqagwcvjwd84pxo0000), [visium-spatial-gene-expression-pancreas-hkjn4fdnaucmjadl0000](/datasets/md/f7.md#visium-spatial-gene-expression-pancreas-hkjn4fdnaucmjadl0000), [visium-spatial-gene-expression-pancreas-yqlimvawxbt0lt7r0000](/datasets/md/ec.md#visium-spatial-gene-expression-pancreas-yqlimvawxbt0lt7r0000), [visium-spatial-gene-expression-pancreas-16jbpbldueiepifk0000](/datasets/md/71.md#visium-spatial-gene-expression-pancreas-16jbpbldueiepifk0000), [visium-spatial-gene-expression-pancreas-wgewy0eimuexgxeb0000](/datasets/md/0f.md#visium-spatial-gene-expression-pancreas-wgewy0eimuexgxeb0000), [visium-spatial-gene-expression-pancreas-5i7lekzbuxsgxlul0000](/datasets/md/ba.md#visium-spatial-gene-expression-pancreas-5i7lekzbuxsgxlul0000), [visium-spatial-gene-expression-pancreas-twihazj6zm2vfu870000](/datasets/md/aa.md#visium-spatial-gene-expression-pancreas-twihazj6zm2vfu870000), [visium-spatial-gene-expression-pancreas-tay71kf170ubwheh0000](/datasets/md/16.md#visium-spatial-gene-expression-pancreas-tay71kf170ubwheh0000), [visium-spatial-gene-expression-pancreas-j98ksdi9odxyowoi0000](/datasets/md/b5.md#visium-spatial-gene-expression-pancreas-j98ksdi9odxyowoi0000), [visium-spatial-gene-expression-pancreas-dox0nry5xaugvhfa0000](/datasets/md/33.md#visium-spatial-gene-expression-pancreas-dox0nry5xaugvhfa0000), [visium-spatial-gene-expression-pancreas-65ncisyysdpprjgx0000](/datasets/md/c0.md#visium-spatial-gene-expression-pancreas-65ncisyysdpprjgx0000), [visium-spatial-gene-expression-pancreas-ux6vz6cou3rvfsnm0000](/datasets/md/da.md#visium-spatial-gene-expression-pancreas-ux6vz6cou3rvfsnm0000), [visium-spatial-gene-expression-pancreas-xmdlhpcsfgdzqsgu0000](/datasets/md/8c.md#visium-spatial-gene-expression-pancreas-xmdlhpcsfgdzqsgu0000), [visium-spatial-gene-expression-pancreas-enncuejhem5xdu3w0000](/datasets/md/df.md#visium-spatial-gene-expression-pancreas-enncuejhem5xdu3w0000), [visium-spatial-gene-expression-pancreas-ryujy4z4n4yjdo9s0000](/datasets/md/f8.md#visium-spatial-gene-expression-pancreas-ryujy4z4n4yjdo9s0000), [visium-spatial-gene-expression-pancreas-riptf0yvnbossfv00000](/datasets/md/a7.md#visium-spatial-gene-expression-pancreas-riptf0yvnbossfv00000), [visium-spatial-gene-expression-pancreas-7oymoqaji756bue40000](/datasets/md/3a.md#visium-spatial-gene-expression-pancreas-7oymoqaji756bue40000), [visium-spatial-gene-expression-pancreas-0gbwebel4ohwtfbm0000](/datasets/md/cc.md#visium-spatial-gene-expression-pancreas-0gbwebel4ohwtfbm0000), [visium-spatial-gene-expression-pancreas-gpc9ohm94kovkf7s0000](/datasets/md/66.md#visium-spatial-gene-expression-pancreas-gpc9ohm94kovkf7s0000), [visium-spatial-gene-expression-pancreas-my1r7tty7xydv7ff0000](/datasets/md/52.md#visium-spatial-gene-expression-pancreas-my1r7tty7xydv7ff0000), [visium-spatial-gene-expression-pancreas-poqf7fcwpir1rbis0000](/datasets/md/86.md#visium-spatial-gene-expression-pancreas-poqf7fcwpir1rbis0000), [visium-spatial-gene-expression-pancreas-5hn75qxkh0dvbsvp0000](/datasets/md/75.md#visium-spatial-gene-expression-pancreas-5hn75qxkh0dvbsvp0000), [visium-spatial-gene-expression-pancreas-go9giphzbcmaouds0000](/datasets/md/e3.md#visium-spatial-gene-expression-pancreas-go9giphzbcmaouds0000), [visium-spatial-gene-expression-pancreas-cf6loovb1qcdhfu90000](/datasets/md/dd.md#visium-spatial-gene-expression-pancreas-cf6loovb1qcdhfu90000), [visium-spatial-gene-expression-pancreas-mzrjtttx8sf5ynmn0000](/datasets/md/0c.md#visium-spatial-gene-expression-pancreas-mzrjtttx8sf5ynmn0000), [visium-spatial-gene-expression-pancreas-1eqvfeqjqifuhfkz0000](/datasets/md/5c.md#visium-spatial-gene-expression-pancreas-1eqvfeqjqifuhfkz0000), [visium-spatial-gene-expression-pancreas-stregvl1uyj2eeom0000](/datasets/md/41.md#visium-spatial-gene-expression-pancreas-stregvl1uyj2eeom0000), [visium-spatial-gene-expression-pancreas-wgmtnfsfhqhanhdf0000](/datasets/md/08.md#visium-spatial-gene-expression-pancreas-wgmtnfsfhqhanhdf0000), [visium-spatial-gene-expression-pancreas-7vbtb072n0akcvca0000](/datasets/md/cb.md#visium-spatial-gene-expression-pancreas-7vbtb072n0akcvca0000), [visium-spatial-gene-expression-pancreas-briaypqfeadnlrta0000](/datasets/md/c6.md#visium-spatial-gene-expression-pancreas-briaypqfeadnlrta0000), [visium-spatial-gene-expression-pancreas-ertxinauxfq1n7zs0000](/datasets/md/9a.md#visium-spatial-gene-expression-pancreas-ertxinauxfq1n7zs0000)

<a id="geo-gse285858"></a>
## Distinct Molecular Patterns in R6/2 HD Mouse Brain: Insights from Spatiotemporal Transcriptomics [Spatial Transcriptomics]

- Page: /collections/geo-gse285858/
- Kind: comparison
- Datasets: 16
- Reference: PMID:40482637
- Design: 10x Genomics Visium spatial transcriptomics was conducted on brain tissue of a rapidly progressing Huntington's disease mouse model, R6/2, and non-transgenic controls at three time points: postnatal day 0, presymptomatic 4-week and symptomatic 12-week (n=2-3 Males/group/genotype).
- Members: [visium-spatial-gene-expression-brain-hgsih9w0bvhlg3ab0000](/datasets/md/ce.md#visium-spatial-gene-expression-brain-hgsih9w0bvhlg3ab0000), [visium-spatial-gene-expression-brain-e2yymki4o4qthmji0000](/datasets/md/c5.md#visium-spatial-gene-expression-brain-e2yymki4o4qthmji0000), [visium-spatial-gene-expression-brain-jokk2qpwcqo8ywz40000](/datasets/md/10.md#visium-spatial-gene-expression-brain-jokk2qpwcqo8ywz40000), [visium-spatial-gene-expression-brain-vzwlickufwtl8mil0000](/datasets/md/15.md#visium-spatial-gene-expression-brain-vzwlickufwtl8mil0000), [visium-spatial-gene-expression-brain-m1mg7dltfehprqds0000](/datasets/md/4d.md#visium-spatial-gene-expression-brain-m1mg7dltfehprqds0000), [visium-spatial-gene-expression-brain-un7goo5apjlbj3jn0000](/datasets/md/9d.md#visium-spatial-gene-expression-brain-un7goo5apjlbj3jn0000), [visium-spatial-gene-expression-brain-azzqpojlm7jmkmqe0000](/datasets/md/d7.md#visium-spatial-gene-expression-brain-azzqpojlm7jmkmqe0000), [visium-spatial-gene-expression-brain-zdhfxfepyhozxhez0000](/datasets/md/07.md#visium-spatial-gene-expression-brain-zdhfxfepyhozxhez0000), [visium-spatial-gene-expression-brain-jimfdrpzanydcnka0000](/datasets/md/38.md#visium-spatial-gene-expression-brain-jimfdrpzanydcnka0000), [visium-spatial-gene-expression-brain-cnp92gded1groamw0000](/datasets/md/0b.md#visium-spatial-gene-expression-brain-cnp92gded1groamw0000), [visium-spatial-gene-expression-brain-gnsizp1kcf2rmebn0000](/datasets/md/61.md#visium-spatial-gene-expression-brain-gnsizp1kcf2rmebn0000), [visium-spatial-gene-expression-brain-fttjtwhjwn63p6nf0000](/datasets/md/e1.md#visium-spatial-gene-expression-brain-fttjtwhjwn63p6nf0000), [visium-spatial-gene-expression-brain-oa3zyhz5bdtvw1kd0000](/datasets/md/01.md#visium-spatial-gene-expression-brain-oa3zyhz5bdtvw1kd0000), [visium-spatial-gene-expression-brain-nrhhtmue6fwz7q920000](/datasets/md/c1.md#visium-spatial-gene-expression-brain-nrhhtmue6fwz7q920000), [visium-spatial-gene-expression-brain-oaizxcressz74wdq0000](/datasets/md/d3.md#visium-spatial-gene-expression-brain-oaizxcressz74wdq0000), [visium-spatial-gene-expression-brain-14t8fcrslghkikgz0000](/datasets/md/b7.md#visium-spatial-gene-expression-brain-14t8fcrslghkikgz0000)

<a id="geo-gse290027"></a>
## IL-32 producing CD8+ memory T cells and Tregs define the IDO1 / PD-L1 niche in human cutaneous leishmaniasis skin lesions

- Page: /collections/geo-gse290027/
- Kind: other
- Datasets: 12
- Reference: PMID:40371647
- Design: Samples: SL2 cohort, BR cohort and IN cohort. Study design Sri Lanka The study design for the Sri Lankan cohort was initially published as part of the validation cohort details in Dey et al, 2021 32. Briefly, individuals who provided written informed consent and exhibited clinically highly suspected CL lesions were enrolled. On day 0, punch biopsies were collected and intralesional sodium stibogluconate (SSG) treatment was administered. Biopsies were processed into formalin-fixed and embedded in paraffin (FFPE) format and then shipped to the University of York (UoY) for subsequent immunological studies described here. These enrolled patients were then monitored for up to 6 months to assess complete clinical cure, and given weekly intralesional SSG injections. Of these, 24/25 patients had achieved complete clinical cure by 6 months, and 1/25 patients at 6.5 months. Out of the 25 patients in this cohort, 23/25 patient sections were included in the neighbourhood image analysis aimed at identifying neighbours of IDO1 and PD-L1 in stained sections; two were excluded due to insufficient material in the blocks. For including samples for 10x Visium analysis, these 23 patients were further screened for the presence of parasites by using an RNA probe against Amastin to detect parasites in 5u thick sections as described previously 32. 6/23 were Amastin+ and were included for Visium spatial analysis (P1-P6). Furthermore, out of the 6 samples included for Visium analysis, only four samples could be included in the CosMx analysis due to the availability of sufficient material in the blocks for follow up studies.  Brazil Patient cohort from Brazil involved 20 patients that agreed to participate by signing the informed consent Form. Patients were diagnosed on the basis of positive polymerase chain reaction and/or indirect immunofluorescence and/or ELISA directed to Leishmania. Depending on the size and location of the lesion and the clinical condition of the patients, treatment was done with systemic pentavalent antimonials (Glucantime) for 20 days; or intralesional pentavalent antimonials (Glucantime) with one application per week for 4 weeks; or liposomal amphotericin B for 10 days. Biopsy samples of the lesion were collected on day 0 when the diagnosis was established and patients were followed up after treatment for 6 months to assess clinical cure. To understand IDO1 and CD274 microenvironments in healing and non-healing chronic skin L.(V)b. lesions, 20 patient samples were screened for double positivity against diagnostic PCR and ELISA (12/20) and were then stratified on the basis of visual treatment score at 3 months; healed if visual score=0 at 3 months and not healed if visual score >0 at 3 months. Of 12 samples, only 2 patients had healing score>0 at 3 months and were included in the study. 2 patients with visual score=0 at 3 months with comparable age, lesion size and lesion duration were then selected from the bigger cohort (12) to include a total of 4 samples that were processed through 10x Visium.  India The initial diagnosis was based on clinical features suggestive of PKDL (presence of papules, nodules and/or hypopigmented macular lesions), a prior history of VL, rK-39 positivity, and/or if they resided in an area endemic for VL. In general, cases with hypopigmented patches were considered as macular PKDL, whereas cases with an assortment of papules, nodules, plaques, and/or macules were termed as polymorphic PKDL. Based on these criteria, individuals who were willing and provided written informed consent were enrolled for this study. The patients were examined by a clinician, clinical history recorded, and biological samples (blood and punch biopsy) collected. Subsequently, the diagnosis was confirmed by qPCR 91. 2 samples with typical histopathology of PKDL lesions and comparable RNA quality were chosen. These two patients were enrolled between November 2019 and August 2021. 5u thick sections were cut and processed through 10x Visium.
- Members: [visium-spatial-gene-expression-skin-of-body-jvzcjoyl3c6b7a2q0000](/datasets/md/04.md#visium-spatial-gene-expression-skin-of-body-jvzcjoyl3c6b7a2q0000), [visium-spatial-gene-expression-skin-of-body-dz6l8dwhxqelwd7a0000](/datasets/md/56.md#visium-spatial-gene-expression-skin-of-body-dz6l8dwhxqelwd7a0000), [visium-spatial-gene-expression-skin-of-body-czusxcqcood0xzxm0000](/datasets/md/f9.md#visium-spatial-gene-expression-skin-of-body-czusxcqcood0xzxm0000), [visium-spatial-gene-expression-skin-of-body-nfhrpuqhhjdlu1vk0000](/datasets/md/21.md#visium-spatial-gene-expression-skin-of-body-nfhrpuqhhjdlu1vk0000), [visium-spatial-gene-expression-skin-of-body-litd2wdxwqkpm37t0000](/datasets/md/a3.md#visium-spatial-gene-expression-skin-of-body-litd2wdxwqkpm37t0000), [visium-spatial-gene-expression-skin-of-body-qsafwvdu4f0ntuyu0000](/datasets/md/4d.md#visium-spatial-gene-expression-skin-of-body-qsafwvdu4f0ntuyu0000), [visium-spatial-gene-expression-skin-of-body-uy1bw4qplzkfknue0000](/datasets/md/18.md#visium-spatial-gene-expression-skin-of-body-uy1bw4qplzkfknue0000), [visium-spatial-gene-expression-skin-of-body-gm0qd5lbazgdkkz30000](/datasets/md/18.md#visium-spatial-gene-expression-skin-of-body-gm0qd5lbazgdkkz30000), [visium-spatial-gene-expression-skin-of-body-mq88ajxq7kucm0xr0000](/datasets/md/66.md#visium-spatial-gene-expression-skin-of-body-mq88ajxq7kucm0xr0000), [visium-spatial-gene-expression-skin-of-body-izwfbetltgdkvz1k0000](/datasets/md/1f.md#visium-spatial-gene-expression-skin-of-body-izwfbetltgdkvz1k0000), [visium-spatial-gene-expression-skin-of-body-xtdmwclbhtxhmljx0000](/datasets/md/aa.md#visium-spatial-gene-expression-skin-of-body-xtdmwclbhtxhmljx0000), [visium-spatial-gene-expression-skin-of-body-oeb8rqbwghlv5dff0000](/datasets/md/8a.md#visium-spatial-gene-expression-skin-of-body-oeb8rqbwghlv5dff0000)

<a id="geo-gse295043"></a>
## A spatiotemporal atlas of orchiectomy-induced modulation of cellular composition and gene expression in the mouse prostate

- Page: /collections/geo-gse295043/
- Kind: comparison
- Datasets: 8
- Reference: PMID:40974890
- Design: Four serial sections of prostates from castrated mice 10 and 20 days after castration were sequenced by 10x Visium to test for differential spatial gene expression after castration.
- Members: [visium-spatial-gene-expression-prostate-gland-mvpbuf5bpx5a1cbz0000](/datasets/md/df.md#visium-spatial-gene-expression-prostate-gland-mvpbuf5bpx5a1cbz0000), [visium-spatial-gene-expression-prostate-gland-x8i8cno2ietlajdj0000](/datasets/md/be.md#visium-spatial-gene-expression-prostate-gland-x8i8cno2ietlajdj0000), [visium-spatial-gene-expression-prostate-gland-lac3zqv70xryliaz0000](/datasets/md/a3.md#visium-spatial-gene-expression-prostate-gland-lac3zqv70xryliaz0000), [visium-spatial-gene-expression-prostate-gland-98ynvw1pl7qxuy0m0000](/datasets/md/d5.md#visium-spatial-gene-expression-prostate-gland-98ynvw1pl7qxuy0m0000), [visium-spatial-gene-expression-prostate-gland-ykdaahots8hwj0pn0000](/datasets/md/a7.md#visium-spatial-gene-expression-prostate-gland-ykdaahots8hwj0pn0000), [visium-spatial-gene-expression-prostate-gland-5tiqmmqqhdxnl9xv0000](/datasets/md/19.md#visium-spatial-gene-expression-prostate-gland-5tiqmmqqhdxnl9xv0000), [visium-spatial-gene-expression-prostate-gland-hd55b4gwfhwn3v5x0000](/datasets/md/8f.md#visium-spatial-gene-expression-prostate-gland-hd55b4gwfhwn3v5x0000), [visium-spatial-gene-expression-prostate-gland-kpgwrznpnjrxm3x10000](/datasets/md/bb.md#visium-spatial-gene-expression-prostate-gland-kpgwrznpnjrxm3x10000)

<a id="geo-gse300445"></a>
## Spatial tumour-immune ecosystems shape the efficacy of anti-PD1 immunotherapy in primary cutaneous melanoma [Spatial Transcriptomics]

- Page: /collections/geo-gse300445/
- Kind: other
- Datasets: 4
- Reference: PMID:42315253
- Design: to study the resistance to immunotherapy anti PD1, we perfomed bulk RNAseq sequencing of 57 pre treatment samples of patients with stage III melanoma, as well as snRNA sequencinf of 2 metastases and visium sequencing for 4 primary tumors..
- Members: [visium-spatial-gene-expression-skin-of-body-yif99adslv4x0f5c0000](/datasets/md/80.md#visium-spatial-gene-expression-skin-of-body-yif99adslv4x0f5c0000), [visium-spatial-gene-expression-skin-of-body-odtveb2cpvnhrd1n0000](/datasets/md/78.md#visium-spatial-gene-expression-skin-of-body-odtveb2cpvnhrd1n0000), [visium-spatial-gene-expression-skin-of-body-ifqycmvt75tlbon80000](/datasets/md/d0.md#visium-spatial-gene-expression-skin-of-body-ifqycmvt75tlbon80000), [visium-spatial-gene-expression-skin-of-body-u5vyeclgc3de8l1p0000](/datasets/md/89.md#visium-spatial-gene-expression-skin-of-body-u5vyeclgc3de8l1p0000)

<a id="geo-gse300645"></a>
## Dysmorphic neurons express markers of inhibitory glycinergic signaling in focal cortical dysplasia

- Page: /collections/geo-gse300645/
- Kind: other
- Datasets: 4
- Reference: PMID:40957662
- Design: Spatial transcriptomic sequencing of formalin-fixed paraffin-embedded samples of focal cortical dysplasia IIB was performed. Four sections of excised FCD brain tissue were processed with Visium by 10X Genomics technology.
- Members: [visium-spatial-gene-expression-cerebral-cortex-mz4xknm6bbdufejy0000](/datasets/md/85.md#visium-spatial-gene-expression-cerebral-cortex-mz4xknm6bbdufejy0000), [visium-spatial-gene-expression-cerebral-cortex-cdqbhjs2r7kycc0v0000](/datasets/md/11.md#visium-spatial-gene-expression-cerebral-cortex-cdqbhjs2r7kycc0v0000), [visium-spatial-gene-expression-cerebral-cortex-ltv6mz2frmlo1j3j0000](/datasets/md/de.md#visium-spatial-gene-expression-cerebral-cortex-ltv6mz2frmlo1j3j0000), [visium-spatial-gene-expression-cerebral-cortex-pw8atv7dfg60g62v0000](/datasets/md/e8.md#visium-spatial-gene-expression-cerebral-cortex-pw8atv7dfg60g62v0000)

<a id="geo-gse314851"></a>
## Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Visium]

- Page: /collections/geo-gse314851/
- Kind: other
- Datasets: 16
- Reference: PMID:41610194
- Design: Visium FFPE: Fresh coronary tissue was fixed in 4% PFA overnight, washed with PBS, and embedded in FFPE blocks. FFPE blocks were sectioned onto Visium slides and underwent H&E staining before imaging.  Libraries were generated using the Visium FFPE v1 kit (#1000188; #1000362; #1000364) and sequenced on a NextSeq2000 according to manufacturer’s recommendations. Libraries were sequenced on a NovaSeq 6000. Xenium in situ: A custom gene panel was designed (Supplementary Table 4) based on the CITE-seq reference map and combined with the Xenium Human Multi-Tissue and Cancer Panel (#1000626, 10x Genomics). FFPE blocks and sectioned and the 10x Genomics Xenium In Situ Gene Expression with Cell Segmentation Staining User Guide protocol (10x Genomics, Protocol number CG000749) used for sample (#1000661; #1000460; #1000487. 10x Genomics,).
- Members: [visium-spatial-gene-expression-coronary-artery-1lqbcsz3o5pp2z3p0000](/datasets/md/37.md#visium-spatial-gene-expression-coronary-artery-1lqbcsz3o5pp2z3p0000), [visium-spatial-gene-expression-coronary-artery-r8ga9tkgm4jzfldx0000](/datasets/md/48.md#visium-spatial-gene-expression-coronary-artery-r8ga9tkgm4jzfldx0000), [visium-spatial-gene-expression-coronary-artery-c1m3qhqdv61wuvx10000](/datasets/md/1b.md#visium-spatial-gene-expression-coronary-artery-c1m3qhqdv61wuvx10000), [visium-spatial-gene-expression-coronary-artery-x3nqruldbzihmqqk0000](/datasets/md/49.md#visium-spatial-gene-expression-coronary-artery-x3nqruldbzihmqqk0000), [visium-spatial-gene-expression-coronary-artery-u0kdz2ypumuprvgn0000](/datasets/md/96.md#visium-spatial-gene-expression-coronary-artery-u0kdz2ypumuprvgn0000), [visium-spatial-gene-expression-coronary-artery-aqdv7iw551ubdn5o0000](/datasets/md/4a.md#visium-spatial-gene-expression-coronary-artery-aqdv7iw551ubdn5o0000), [visium-spatial-gene-expression-coronary-artery-vo2yk53k9f1zwbhs0000](/datasets/md/0b.md#visium-spatial-gene-expression-coronary-artery-vo2yk53k9f1zwbhs0000), [visium-spatial-gene-expression-coronary-artery-zqld0wj0tmcovdhy0000](/datasets/md/0b.md#visium-spatial-gene-expression-coronary-artery-zqld0wj0tmcovdhy0000), [visium-spatial-gene-expression-coronary-artery-ti5dqrsfypb4varh0000](/datasets/md/ae.md#visium-spatial-gene-expression-coronary-artery-ti5dqrsfypb4varh0000), [visium-spatial-gene-expression-coronary-artery-nmscoeq13amrnyjd0000](/datasets/md/72.md#visium-spatial-gene-expression-coronary-artery-nmscoeq13amrnyjd0000), [visium-spatial-gene-expression-coronary-artery-qy2gmqxz8edr4jxx0000](/datasets/md/5b.md#visium-spatial-gene-expression-coronary-artery-qy2gmqxz8edr4jxx0000), [visium-spatial-gene-expression-coronary-artery-kkzoqb7b7iqclbzg0000](/datasets/md/1b.md#visium-spatial-gene-expression-coronary-artery-kkzoqb7b7iqclbzg0000), [visium-spatial-gene-expression-coronary-artery-nveknsw0qykelzhm0000](/datasets/md/2c.md#visium-spatial-gene-expression-coronary-artery-nveknsw0qykelzhm0000), [visium-spatial-gene-expression-coronary-artery-ccpmyy99xlyzmstx0000](/datasets/md/37.md#visium-spatial-gene-expression-coronary-artery-ccpmyy99xlyzmstx0000), [visium-spatial-gene-expression-coronary-artery-crnvyt0muqlvk4sj0000](/datasets/md/7a.md#visium-spatial-gene-expression-coronary-artery-crnvyt0muqlvk4sj0000), [visium-spatial-gene-expression-coronary-artery-kwoocg0c30dupqlu0000](/datasets/md/cb.md#visium-spatial-gene-expression-coronary-artery-kwoocg0c30dupqlu0000)

<a id="geo-gse320505"></a>
## Single cell and spatial sequencing analysis of cancer associated fibroblasts in the brain metastasis tumor microenvironment

- Page: /collections/geo-gse320505/
- Kind: other
- Datasets: 4
- Reference: PMID:41917370
- Design: The spatial organization of BM TME cell types was investigated through spatial transcriptomic profiling of four BM tissue samples (BBM-USC-5-1, LBM-RIH-2, LBM-RIH-3, and LBM-USC-2-1). Three samples were from lung-to-brain metastases (LBM) and one from a breast-to-brain metastasis (BBM).
- Members: [visium-spatial-gene-expression-brain-pralfkq1xoxdzrmr0000](/datasets/md/cf.md#visium-spatial-gene-expression-brain-pralfkq1xoxdzrmr0000), [visium-spatial-gene-expression-brain-hsrvvlroltx8ozvf0000](/datasets/md/9b.md#visium-spatial-gene-expression-brain-hsrvvlroltx8ozvf0000), [visium-spatial-gene-expression-brain-20bve5hwpjewxr3b0000](/datasets/md/7f.md#visium-spatial-gene-expression-brain-20bve5hwpjewxr3b0000), [visium-spatial-gene-expression-brain-4vine6atdxo8ky4c0000](/datasets/md/98.md#visium-spatial-gene-expression-brain-4vine6atdxo8ky4c0000)

<a id="geo-gse341225"></a>
## Spatial analysis reveals the evolving organization of IDH-mutant glioma

- Page: /collections/geo-gse341225/
- Kind: other
- Datasets: 12
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE341225
- Design: 13 IDH-WT human glioblastoma samples spatially annotated by the surgeon during navigation-guided tumor resection and 24 IDH-mutant glioma samples profiled by 10X Visium spatial transcriptomics
- Members: [visium-spatial-gene-expression-brain-ri4vx8ikmtrgos3s0000](/datasets/md/ec.md#visium-spatial-gene-expression-brain-ri4vx8ikmtrgos3s0000), [visium-spatial-gene-expression-brain-bp3rubtigholdkmz0000](/datasets/md/86.md#visium-spatial-gene-expression-brain-bp3rubtigholdkmz0000), [visium-spatial-gene-expression-brain-1s8lowlx77lgk6kg0000](/datasets/md/8f.md#visium-spatial-gene-expression-brain-1s8lowlx77lgk6kg0000), [visium-spatial-gene-expression-brain-7uy6hgiedkft6srf0000](/datasets/md/42.md#visium-spatial-gene-expression-brain-7uy6hgiedkft6srf0000), [visium-spatial-gene-expression-brain-qaoumirxtmjloq8y0000](/datasets/md/86.md#visium-spatial-gene-expression-brain-qaoumirxtmjloq8y0000), [visium-spatial-gene-expression-brain-gdxd4om89xnysx2w0000](/datasets/md/b9.md#visium-spatial-gene-expression-brain-gdxd4om89xnysx2w0000), [visium-spatial-gene-expression-brain-gcsftizlixzrr7ac0000](/datasets/md/12.md#visium-spatial-gene-expression-brain-gcsftizlixzrr7ac0000), [visium-spatial-gene-expression-brain-ril7bqcjil5tbtin0000](/datasets/md/d1.md#visium-spatial-gene-expression-brain-ril7bqcjil5tbtin0000), [visium-spatial-gene-expression-brain-uvsrghhdrrjju4mp0000](/datasets/md/98.md#visium-spatial-gene-expression-brain-uvsrghhdrrjju4mp0000), [visium-spatial-gene-expression-brain-tga6kzvgl4ynxqga0000](/datasets/md/d6.md#visium-spatial-gene-expression-brain-tga6kzvgl4ynxqga0000), [visium-spatial-gene-expression-brain-zjhfgytmqrgl4ptu0000](/datasets/md/6b.md#visium-spatial-gene-expression-brain-zjhfgytmqrgl4ptu0000), [visium-spatial-gene-expression-brain-63z450ma6qbef44j0000](/datasets/md/f7.md#visium-spatial-gene-expression-brain-63z450ma6qbef44j0000)

<a id="hest-10x-visium-spatial-transcriptomics-of-murine-colon-at-d14-mucosa-healing-in-b-cell-sufficient-deficient-mice"></a>
## 10X Visium Spatial transcriptomics of murine colon at d14 (mucosa healing) in B cell sufficient-deficient mice

- Page: /collections/hest-10x-visium-spatial-transcriptomics-of-murine-colon-at-d14-mucosa-healing-in-b-cell-sufficient-deficient-mice/
- Kind: comparison
- Datasets: 2
- Members: [visium-spatial-gene-expression-intestine-yrsn116e2kamfjlf0000](/datasets/md/18.md#visium-spatial-gene-expression-intestine-yrsn116e2kamfjlf0000), [visium-spatial-gene-expression-intestine-t7pjoqr9rbgzz9qu0000](/datasets/md/26.md#visium-spatial-gene-expression-intestine-t7pjoqr9rbgzz9qu0000)

<a id="abc-hmba-merscope-qm23-50-001-bg"></a>
## A cross-species spatial transcriptomic atlas of the human and non-human primate basal ganglia

- Page: /collections/abc-hmba-merscope-qm23-50-001-bg/
- Kind: publication
- Datasets: 86
- Reference: 10.1101/2025.11.22.688128
- Members: [vizgen-merscope-basal-ganglion-dh8fvymbbp9os5xc0000](/datasets/md/8f.md#vizgen-merscope-basal-ganglion-dh8fvymbbp9os5xc0000), [vizgen-merscope-basal-ganglion-q4pljatorroigqkq0000](/datasets/md/79.md#vizgen-merscope-basal-ganglion-q4pljatorroigqkq0000), [vizgen-merscope-basal-ganglion-olnrrkbiahz6su5d0000](/datasets/md/58.md#vizgen-merscope-basal-ganglion-olnrrkbiahz6su5d0000), [vizgen-merscope-basal-ganglion-67mxmtovgzus36f30000](/datasets/md/aa.md#vizgen-merscope-basal-ganglion-67mxmtovgzus36f30000), [vizgen-merscope-basal-ganglion-yqwhg9w3mdskzkmc0000](/datasets/md/b0.md#vizgen-merscope-basal-ganglion-yqwhg9w3mdskzkmc0000), [vizgen-merscope-basal-ganglion-03prblenhzv4mnco0000](/datasets/md/1f.md#vizgen-merscope-basal-ganglion-03prblenhzv4mnco0000), [vizgen-merscope-basal-ganglion-hplwfohz8wowa6nt0000](/datasets/md/e0.md#vizgen-merscope-basal-ganglion-hplwfohz8wowa6nt0000), [vizgen-merscope-basal-ganglion-ymowmxqsuhmvpkxc0000](/datasets/md/e5.md#vizgen-merscope-basal-ganglion-ymowmxqsuhmvpkxc0000), [vizgen-merscope-basal-ganglion-0woctdxxf9pywrmp0000](/datasets/md/34.md#vizgen-merscope-basal-ganglion-0woctdxxf9pywrmp0000), [vizgen-merscope-basal-ganglion-ilnocsnhvjlwwsnc0000](/datasets/md/53.md#vizgen-merscope-basal-ganglion-ilnocsnhvjlwwsnc0000), [vizgen-merscope-basal-ganglion-ouzjrrknkhzikiii0000](/datasets/md/6a.md#vizgen-merscope-basal-ganglion-ouzjrrknkhzikiii0000), [vizgen-merscope-basal-ganglion-akdqhr1cigahwagj0000](/datasets/md/1d.md#vizgen-merscope-basal-ganglion-akdqhr1cigahwagj0000), [vizgen-merscope-basal-ganglion-wdok6duuovuac1gj0000](/datasets/md/b8.md#vizgen-merscope-basal-ganglion-wdok6duuovuac1gj0000), [vizgen-merscope-basal-ganglion-qqh2px9dagg3sdcp0000](/datasets/md/e2.md#vizgen-merscope-basal-ganglion-qqh2px9dagg3sdcp0000), [vizgen-merscope-basal-ganglion-qpod94ibjvi95zqt0000](/datasets/md/b2.md#vizgen-merscope-basal-ganglion-qpod94ibjvi95zqt0000), [vizgen-merscope-basal-ganglion-3cggcfmddnghmy8d0000](/datasets/md/07.md#vizgen-merscope-basal-ganglion-3cggcfmddnghmy8d0000), [vizgen-merscope-basal-ganglion-g9byatatgtljpbgj0000](/datasets/md/c7.md#vizgen-merscope-basal-ganglion-g9byatatgtljpbgj0000), [vizgen-merscope-basal-ganglion-e2ts3evijcd3xir20000](/datasets/md/3e.md#vizgen-merscope-basal-ganglion-e2ts3evijcd3xir20000), [vizgen-merscope-basal-ganglion-hbwyjw3t48qhfgfs0000](/datasets/md/23.md#vizgen-merscope-basal-ganglion-hbwyjw3t48qhfgfs0000), [vizgen-merscope-basal-ganglion-kyxohz72b58qy8dd0000](/datasets/md/b2.md#vizgen-merscope-basal-ganglion-kyxohz72b58qy8dd0000), [vizgen-merscope-basal-ganglion-borgd7bkc6fprypz0000](/datasets/md/00.md#vizgen-merscope-basal-ganglion-borgd7bkc6fprypz0000), [vizgen-merscope-basal-ganglion-oxe5aajwec9imhaf0000](/datasets/md/33.md#vizgen-merscope-basal-ganglion-oxe5aajwec9imhaf0000), [vizgen-merscope-basal-ganglion-7nhweht311d3eii90000](/datasets/md/56.md#vizgen-merscope-basal-ganglion-7nhweht311d3eii90000), [vizgen-merscope-basal-ganglion-23qtmj7cjmicpfct0000](/datasets/md/70.md#vizgen-merscope-basal-ganglion-23qtmj7cjmicpfct0000), [vizgen-merscope-basal-ganglion-lsubpqj10fg2eidk0000](/datasets/md/a1.md#vizgen-merscope-basal-ganglion-lsubpqj10fg2eidk0000), [vizgen-merscope-basal-ganglion-i1iun9jizatq0tw80000](/datasets/md/00.md#vizgen-merscope-basal-ganglion-i1iun9jizatq0tw80000), [vizgen-merscope-basal-ganglion-dhdei65nzqlsjrdv0000](/datasets/md/6b.md#vizgen-merscope-basal-ganglion-dhdei65nzqlsjrdv0000), [vizgen-merscope-basal-ganglion-es6hdl49tlwrrmv70000](/datasets/md/17.md#vizgen-merscope-basal-ganglion-es6hdl49tlwrrmv70000), [vizgen-merscope-basal-ganglion-ndwx1hyyusqmhcar0000](/datasets/md/21.md#vizgen-merscope-basal-ganglion-ndwx1hyyusqmhcar0000), [vizgen-merscope-basal-ganglion-5letr7esclfehi600000](/datasets/md/f3.md#vizgen-merscope-basal-ganglion-5letr7esclfehi600000), [vizgen-merscope-basal-ganglion-z0jtimzaqftrdkwr0000](/datasets/md/82.md#vizgen-merscope-basal-ganglion-z0jtimzaqftrdkwr0000), [vizgen-merscope-basal-ganglion-273prrpsoy3vh5n00000](/datasets/md/e7.md#vizgen-merscope-basal-ganglion-273prrpsoy3vh5n00000), [vizgen-merscope-basal-ganglion-iyez4hbe5lxdcaoa0000](/datasets/md/92.md#vizgen-merscope-basal-ganglion-iyez4hbe5lxdcaoa0000), [vizgen-merscope-basal-ganglion-az1m8bnvpsxoeh740000](/datasets/md/ee.md#vizgen-merscope-basal-ganglion-az1m8bnvpsxoeh740000), [vizgen-merscope-basal-ganglion-pftgwzabmnymmqre0000](/datasets/md/3a.md#vizgen-merscope-basal-ganglion-pftgwzabmnymmqre0000), [vizgen-merscope-basal-ganglion-0yftzwyvxzpqll400000](/datasets/md/ec.md#vizgen-merscope-basal-ganglion-0yftzwyvxzpqll400000), [vizgen-merscope-basal-ganglion-jfdylh1dys5iud3o0000](/datasets/md/27.md#vizgen-merscope-basal-ganglion-jfdylh1dys5iud3o0000), [vizgen-merscope-basal-ganglion-bpvkabvwropbysnv0000](/datasets/md/c0.md#vizgen-merscope-basal-ganglion-bpvkabvwropbysnv0000), [vizgen-merscope-basal-ganglion-ibaunjzvbid7wgm00000](/datasets/md/63.md#vizgen-merscope-basal-ganglion-ibaunjzvbid7wgm00000), [vizgen-merscope-basal-ganglion-s0ixid6cdg0v1gtu0000](/datasets/md/c3.md#vizgen-merscope-basal-ganglion-s0ixid6cdg0v1gtu0000), [vizgen-merscope-basal-ganglion-mv2smxicunrplydc0000](/datasets/md/1c.md#vizgen-merscope-basal-ganglion-mv2smxicunrplydc0000), [vizgen-merscope-basal-ganglion-tbh7vlqxlunvqoox0000](/datasets/md/60.md#vizgen-merscope-basal-ganglion-tbh7vlqxlunvqoox0000), [vizgen-merscope-basal-ganglion-5zat9v8dyjkhzlvp0000](/datasets/md/1a.md#vizgen-merscope-basal-ganglion-5zat9v8dyjkhzlvp0000), [vizgen-merscope-basal-ganglion-xs7d8fdfulotoqhn0000](/datasets/md/93.md#vizgen-merscope-basal-ganglion-xs7d8fdfulotoqhn0000), [vizgen-merscope-basal-ganglion-dfjmdk0wqk7nkfke0000](/datasets/md/e8.md#vizgen-merscope-basal-ganglion-dfjmdk0wqk7nkfke0000), [vizgen-merscope-basal-ganglion-ipy159qqcfpbzc8e0000](/datasets/md/50.md#vizgen-merscope-basal-ganglion-ipy159qqcfpbzc8e0000), [vizgen-merscope-basal-ganglion-t2gitpbo9cb8jxu90000](/datasets/md/18.md#vizgen-merscope-basal-ganglion-t2gitpbo9cb8jxu90000), [vizgen-merscope-basal-ganglion-hq3mxo03fst3qtl00000](/datasets/md/11.md#vizgen-merscope-basal-ganglion-hq3mxo03fst3qtl00000), [vizgen-merscope-basal-ganglion-2lk9oy4eqgar5hff0000](/datasets/md/10.md#vizgen-merscope-basal-ganglion-2lk9oy4eqgar5hff0000), [vizgen-merscope-basal-ganglion-r1ckfmwoqtl8loiu0000](/datasets/md/e6.md#vizgen-merscope-basal-ganglion-r1ckfmwoqtl8loiu0000), [vizgen-merscope-basal-ganglion-v53bij7j5eul8eom0000](/datasets/md/59.md#vizgen-merscope-basal-ganglion-v53bij7j5eul8eom0000), [vizgen-merscope-basal-ganglion-91czzbtosckeigvz0000](/datasets/md/4a.md#vizgen-merscope-basal-ganglion-91czzbtosckeigvz0000), [vizgen-merscope-basal-ganglion-pxr46mioeuzaty3t0000](/datasets/md/47.md#vizgen-merscope-basal-ganglion-pxr46mioeuzaty3t0000), [vizgen-merscope-basal-ganglion-fu7wmhy1n5mqb8m20000](/datasets/md/28.md#vizgen-merscope-basal-ganglion-fu7wmhy1n5mqb8m20000), [vizgen-merscope-basal-ganglion-dqbonkp8wa40quwm0000](/datasets/md/ad.md#vizgen-merscope-basal-ganglion-dqbonkp8wa40quwm0000), [vizgen-merscope-basal-ganglion-n9coqcpd5r4xkpwv0000](/datasets/md/a4.md#vizgen-merscope-basal-ganglion-n9coqcpd5r4xkpwv0000), [vizgen-merscope-basal-ganglion-suuwptxbfn27jafk0000](/datasets/md/1f.md#vizgen-merscope-basal-ganglion-suuwptxbfn27jafk0000), [vizgen-merscope-basal-ganglion-qnatw9z4iq7htoye0000](/datasets/md/06.md#vizgen-merscope-basal-ganglion-qnatw9z4iq7htoye0000), [vizgen-merscope-basal-ganglion-td0zqrobsgbg6twy0000](/datasets/md/5e.md#vizgen-merscope-basal-ganglion-td0zqrobsgbg6twy0000), [vizgen-merscope-basal-ganglion-q3rjhd7qdpjwxvid0000](/datasets/md/21.md#vizgen-merscope-basal-ganglion-q3rjhd7qdpjwxvid0000), [vizgen-merscope-basal-ganglion-9ld9ekad3wjoewc40000](/datasets/md/8f.md#vizgen-merscope-basal-ganglion-9ld9ekad3wjoewc40000), [vizgen-merscope-basal-ganglion-ejmp2jasjmw3rirr0000](/datasets/md/da.md#vizgen-merscope-basal-ganglion-ejmp2jasjmw3rirr0000), [vizgen-merscope-basal-ganglion-pf8tmez2p7ko3bbb0000](/datasets/md/0d.md#vizgen-merscope-basal-ganglion-pf8tmez2p7ko3bbb0000), [vizgen-merscope-basal-ganglion-ymbfaaupvz2bpezb0000](/datasets/md/7b.md#vizgen-merscope-basal-ganglion-ymbfaaupvz2bpezb0000), [vizgen-merscope-basal-ganglion-3wkgwwegslqp7k8q0000](/datasets/md/ba.md#vizgen-merscope-basal-ganglion-3wkgwwegslqp7k8q0000), [vizgen-merscope-basal-ganglion-mq2bzitu0eqc61zk0000](/datasets/md/f8.md#vizgen-merscope-basal-ganglion-mq2bzitu0eqc61zk0000), [vizgen-merscope-basal-ganglion-4mnxrkspfyqhcymh0000](/datasets/md/82.md#vizgen-merscope-basal-ganglion-4mnxrkspfyqhcymh0000), [vizgen-merscope-basal-ganglion-23eysvdrfdompc9w0000](/datasets/md/fc.md#vizgen-merscope-basal-ganglion-23eysvdrfdompc9w0000), [vizgen-merscope-basal-ganglion-06jjz4fhjtqvxquu0000](/datasets/md/62.md#vizgen-merscope-basal-ganglion-06jjz4fhjtqvxquu0000), [vizgen-merscope-basal-ganglion-8oriwaltsn0aezuc0000](/datasets/md/0d.md#vizgen-merscope-basal-ganglion-8oriwaltsn0aezuc0000), [vizgen-merscope-basal-ganglion-qgvosksdvlde4ci50000](/datasets/md/02.md#vizgen-merscope-basal-ganglion-qgvosksdvlde4ci50000), [vizgen-merscope-basal-ganglion-xpcsioo0g52knhsk0000](/datasets/md/78.md#vizgen-merscope-basal-ganglion-xpcsioo0g52knhsk0000), [vizgen-merscope-basal-ganglion-o0sfwj19az2pys530000](/datasets/md/8d.md#vizgen-merscope-basal-ganglion-o0sfwj19az2pys530000), [vizgen-merscope-basal-ganglion-ntiskaabnqjuo9zc0000](/datasets/md/0c.md#vizgen-merscope-basal-ganglion-ntiskaabnqjuo9zc0000), [vizgen-merscope-basal-ganglion-d2v4k8otcbjodytf0000](/datasets/md/df.md#vizgen-merscope-basal-ganglion-d2v4k8otcbjodytf0000), [vizgen-merscope-basal-ganglion-rmo1kysmx9lbcf2v0000](/datasets/md/f8.md#vizgen-merscope-basal-ganglion-rmo1kysmx9lbcf2v0000), [vizgen-merscope-basal-ganglion-y1prenenksemabpv0000](/datasets/md/e2.md#vizgen-merscope-basal-ganglion-y1prenenksemabpv0000), [vizgen-merscope-basal-ganglion-as0csx8ftvzyj0je0000](/datasets/md/d3.md#vizgen-merscope-basal-ganglion-as0csx8ftvzyj0je0000), [vizgen-merscope-basal-ganglion-ijttzmmmvi53rzyy0000](/datasets/md/01.md#vizgen-merscope-basal-ganglion-ijttzmmmvi53rzyy0000), [vizgen-merscope-basal-ganglion-s2o7pgdgqjj6cjmp0000](/datasets/md/1c.md#vizgen-merscope-basal-ganglion-s2o7pgdgqjj6cjmp0000), [vizgen-merscope-basal-ganglion-mbqsqrndyyf7w4pw0000](/datasets/md/09.md#vizgen-merscope-basal-ganglion-mbqsqrndyyf7w4pw0000), [vizgen-merscope-basal-ganglion-mqolnjt0kp25frq50000](/datasets/md/98.md#vizgen-merscope-basal-ganglion-mqolnjt0kp25frq50000), [vizgen-merscope-basal-ganglion-e0yb3pgabq03ckqf0000](/datasets/md/d8.md#vizgen-merscope-basal-ganglion-e0yb3pgabq03ckqf0000), [vizgen-merscope-basal-ganglion-vom6hytoddev13le0000](/datasets/md/0c.md#vizgen-merscope-basal-ganglion-vom6hytoddev13le0000), [vizgen-merscope-basal-ganglion-c0wmspj24cr2w08e0000](/datasets/md/0c.md#vizgen-merscope-basal-ganglion-c0wmspj24cr2w08e0000), [vizgen-merscope-basal-ganglion-e7l7s1m5creubzjp0000](/datasets/md/e2.md#vizgen-merscope-basal-ganglion-e7l7s1m5creubzjp0000)

<a id="geo-gsm9238733"></a>
## Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues.

- Page: /collections/geo-gsm9238733/
- Kind: publication
- Datasets: 3
- Reference: 10.1038/s41467-025-64990-y
- Members: [vizgen-merscope-unknown-ygwyjwosoynpjaea0000](/datasets/md/84.md#vizgen-merscope-unknown-ygwyjwosoynpjaea0000), [vizgen-merscope-unknown-l6qosbvmkfsb49ug0000](/datasets/md/51.md#vizgen-merscope-unknown-l6qosbvmkfsb49ug0000), [vizgen-merscope-unknown-flfn0qljyhdje3qi0000](/datasets/md/ca.md#vizgen-merscope-unknown-flfn0qljyhdje3qi0000)

<a id="geo-gse294759"></a>
## geo-gse294759

- Page: /collections/geo-gse294759/
- Kind: other
- Datasets: 3
- Members: [stereo-seq-heart-aanrhwnnwuxv29ki0000](/datasets/md/e4.md#stereo-seq-heart-aanrhwnnwuxv29ki0000), [stereo-seq-lung-h7jttrg7wdyewing0000](/datasets/md/61.md#stereo-seq-lung-h7jttrg7wdyewing0000), [stereo-seq-head-oacvjbpklzilck3o0000](/datasets/md/b8.md#stereo-seq-head-oacvjbpklzilck3o0000)