# SpatialData-DB collections, shard c Generated from catalog release catalog-2026-11-01. Each collection has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt. ## Visium CytAssist Gene Expression of Post-Xenium vs Control - Page: /collections/visium-cytassist-gene-expression-of-post-xenium-vs-control/ - Kind: comparison - Datasets: 5 - Members: [visium-spatial-gene-expression-colon-4lgawimgndmi79si0002](/datasets/md/73.md#visium-spatial-gene-expression-colon-4lgawimgndmi79si0002), [visium-spatial-gene-expression-colon-lemjbithi5ge9p640002](/datasets/md/db.md#visium-spatial-gene-expression-colon-lemjbithi5ge9p640002), [visium-spatial-gene-expression-colon-4gqynur0sn7fy8zx0002](/datasets/md/a1.md#visium-spatial-gene-expression-colon-4gqynur0sn7fy8zx0002), [visium-spatial-gene-expression-brain-l2mocuoxkjym0gju0002](/datasets/md/a0.md#visium-spatial-gene-expression-brain-l2mocuoxkjym0gju0002), [visium-spatial-gene-expression-brain-kxqx8mjjazjh7rbd0002](/datasets/md/9e.md#visium-spatial-gene-expression-brain-kxqx8mjjazjh7rbd0002) ## A Spatial and Temporal Transcriptomic Atlas of Mouse Intestinal Regeneration in the Jejunum - Page: /collections/geo-gse303705-mouse-intestine-regeneration/ - Kind: comparison - Datasets: 4 - Design: 23 C57BL/6J mice were included in the study to generate 4 spatial transcriptomics datasets. Mice were treated with 12Gy whole-body irradiation (IR). Control (non-IR) mice, and mice post-IR days 1 through 6 were analyzed using Visium HD spatial transcriptomics. The platform uses near-genome scale probes to capture transcripts within a 2x2um array. A supplementary file (README_spatial_data_guide.pdf) is provided with instructions for accessing the datasets, and includes a description of the treatment post-IR per mouse, per each dataset. - Members: [visium-hd-jejunum-t3s6bc0p0gvaouhd0000](/datasets/md/72.md#visium-hd-jejunum-t3s6bc0p0gvaouhd0000), [visium-hd-jejunum-eakazsu3silyfiyi0000](/datasets/md/92.md#visium-hd-jejunum-eakazsu3silyfiyi0000), [visium-hd-jejunum-kzrfcczx518qdcgu0000](/datasets/md/5a.md#visium-hd-jejunum-kzrfcczx518qdcgu0000), [visium-hd-jejunum-d6zkyysqou5yup4a0000](/datasets/md/bd.md#visium-hd-jejunum-d6zkyysqou5yup4a0000) ## Leveraging single cell multiomic analyses to identify gene regulatory networks that drive human articular cartilage cell fate. - Page: /collections/geo-gse260926/ - Kind: publication - Datasets: 1 - Reference: 10.1016/j.joca.2025.12.025 - Members: [visium-hd-knee-lsq8kzne2c0ioktx0000](/datasets/md/cd.md#visium-hd-knee-lsq8kzne2c0ioktx0000) ## 10x-human-skin-data-xenium-human-multi-tissue-and-cancer-panel-1-standard - Page: /collections/10x-human-skin-data-xenium-human-multi-tissue-and-cancer-panel-1-standard/ - Kind: other - Datasets: 2 - Members: [10x-xenium-skin-of-body-yy3xv9hxnhqu3zc30001](/datasets/md/39.md#10x-xenium-skin-of-body-yy3xv9hxnhqu3zc30001), [10x-xenium-skin-of-body-lcaxod0ctweyb92y0001](/datasets/md/0e.md#10x-xenium-skin-of-body-lcaxod0ctweyb92y0001) ## Distinct mesenchymal cell states mediate prostate cancer progression - Page: /collections/doi-10-1101-2023-03-29-534769/ - Kind: comparison - Datasets: 2 - Reference: 10.1101/2023.03.29.534769 - Members: [visium-spatial-gene-expression-prostate-gland-yd2xclzt7kmsm2nr0000](/datasets/md/c4.md#visium-spatial-gene-expression-prostate-gland-yd2xclzt7kmsm2nr0000), [visium-spatial-gene-expression-prostate-gland-23wpxsatdgqtwdd60000](/datasets/md/3b.md#visium-spatial-gene-expression-prostate-gland-23wpxsatdgqtwdd60000) ## Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics - Page: /collections/geo-gse153424/ - Kind: other - Datasets: 8 - Reference: PMID:35210624 - Design: Lentiviral delivery of a transcribed barcode into neuroepithelial progenitor cells using in utero microinjection into the mouse forebrain at embryonic day 9.5 followed by RNA-seq analysis of barcoded cells at postnatal day 11-14. - Members: [visium-spatial-gene-expression-brain-cpbxqxqmeiabxgoe0000](/datasets/md/73.md#visium-spatial-gene-expression-brain-cpbxqxqmeiabxgoe0000), [visium-spatial-gene-expression-brain-xd8clih2e6qkz0ga0000](/datasets/md/31.md#visium-spatial-gene-expression-brain-xd8clih2e6qkz0ga0000), [visium-spatial-gene-expression-brain-83linorswqab21ha0000](/datasets/md/c2.md#visium-spatial-gene-expression-brain-83linorswqab21ha0000), [visium-spatial-gene-expression-brain-ofyecvyimox2pjix0000](/datasets/md/c4.md#visium-spatial-gene-expression-brain-ofyecvyimox2pjix0000), [visium-spatial-gene-expression-brain-hrgo7wh54betxbqe0000](/datasets/md/58.md#visium-spatial-gene-expression-brain-hrgo7wh54betxbqe0000), [visium-spatial-gene-expression-brain-dbfpramfkzpgez6i0000](/datasets/md/b8.md#visium-spatial-gene-expression-brain-dbfpramfkzpgez6i0000), [visium-spatial-gene-expression-brain-iliw6rahbwnvpeid0000](/datasets/md/b2.md#visium-spatial-gene-expression-brain-iliw6rahbwnvpeid0000), [visium-spatial-gene-expression-brain-ubypbpqgvpourmkc0000](/datasets/md/16.md#visium-spatial-gene-expression-brain-ubypbpqgvpourmkc0000) ## Defining the spatial-molecular map of fibrotic tendon healing and the drivers of Scleraxis-lineage cell fate and function - Page: /collections/geo-gse216214/ - Kind: time course - Datasets: 8 - Reference: PMID:36417854 - Design: Hindpaws from Scx-Ai9 mice (Scx-lin+ cells labeled with tdTomato fluorescence prior to surgery) were collected at D0, 14, 21, and 28 post-injury (in duplicate) for ST analysis of healing tendons using the 10X Visium platform - Members: [visium-spatial-gene-expression-tendon-ybnafrqus54qrfem0000](/datasets/md/07.md#visium-spatial-gene-expression-tendon-ybnafrqus54qrfem0000), [visium-spatial-gene-expression-tendon-7j1wzibedgxjssyh0000](/datasets/md/3c.md#visium-spatial-gene-expression-tendon-7j1wzibedgxjssyh0000), [visium-spatial-gene-expression-tendon-gyhey2zcnq7hher30000](/datasets/md/f8.md#visium-spatial-gene-expression-tendon-gyhey2zcnq7hher30000), [visium-spatial-gene-expression-tendon-z4tlqu2w20yzyety0000](/datasets/md/ba.md#visium-spatial-gene-expression-tendon-z4tlqu2w20yzyety0000), [visium-spatial-gene-expression-tendon-o0ib5ucwslrqckw20000](/datasets/md/1c.md#visium-spatial-gene-expression-tendon-o0ib5ucwslrqckw20000), [visium-spatial-gene-expression-tendon-d0dfmted53l4o4qb0000](/datasets/md/0e.md#visium-spatial-gene-expression-tendon-d0dfmted53l4o4qb0000), [visium-spatial-gene-expression-tendon-vazilcwf44gjrnal0000](/datasets/md/7b.md#visium-spatial-gene-expression-tendon-vazilcwf44gjrnal0000), [visium-spatial-gene-expression-tendon-plumuxvkbsnxfy610000](/datasets/md/18.md#visium-spatial-gene-expression-tendon-plumuxvkbsnxfy610000) ## Insulin-like growth factor I reduces coronary atherosclerosis in pigs with familial hypercholesterolemia - Page: /collections/geo-gse220218/ - Kind: comparison - Datasets: 4 - Reference: PMID:36602878 - Design: FH pigs were fed with high-fat diet and received daily injections of IGF-1 or saline (control) for 6 months. A total 4 cryosections of right coronary artery (RCA) were obtained from female FH pigs (N=2, IGF-1-treated pigs, N=2, saline-treated pigs, control) and used for spatial transcriptomics (ST). Section imaging, RNA extraction, cDNA library preparation and sequencing were performed in according to the ST’s manufacturer (Visium/10X genomics) recommendations. - Members: [visium-spatial-gene-expression-right-coronary-artery-rpwjuubvitr62wba0000](/datasets/md/89.md#visium-spatial-gene-expression-right-coronary-artery-rpwjuubvitr62wba0000), [visium-spatial-gene-expression-right-coronary-artery-fy1ljf4huzsjjgvl0000](/datasets/md/b4.md#visium-spatial-gene-expression-right-coronary-artery-fy1ljf4huzsjjgvl0000), [visium-spatial-gene-expression-right-coronary-artery-yq7r3zaweyxf9hli0000](/datasets/md/9a.md#visium-spatial-gene-expression-right-coronary-artery-yq7r3zaweyxf9hli0000), [visium-spatial-gene-expression-right-coronary-artery-ommn1ifbhruvbou00000](/datasets/md/39.md#visium-spatial-gene-expression-right-coronary-artery-ommn1ifbhruvbou00000) ## Molecular reframing of fibroblasts during resolution of arthritis [Visium] - Page: /collections/geo-gse228972/ - Kind: comparison - Datasets: 4 - Reference: PMID:38396288 - Design: Synovial biopsies from two active Psoriatic Arthritis patient and two healthy individuals were analyzed using spatial transcriptomics - Members: [visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-fmedcyg0obcpypda0000](/datasets/md/84.md#visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-fmedcyg0obcpypda0000), [visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-acexrgg3hiv0dy9z0000](/datasets/md/d2.md#visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-acexrgg3hiv0dy9z0000), [visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-np8vpr1bgpiiellx0000](/datasets/md/af.md#visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-np8vpr1bgpiiellx0000), [visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-fsh2fm611okzhfsr0000](/datasets/md/ed.md#visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-fsh2fm611okzhfsr0000) ## Spatial transcriptomics in embryonic mouse diaphragm muscle reveals regional gradients and subdomains of developmental gene expression - Page: /collections/geo-gse244014/ - Kind: comparison - Datasets: 8 - Reference: PMID:38883818 - Design: Three E14.5 and two E18.5 diaphragm muscles from control embryos, one E14.5 and one E18.5 diaphragm from Cav1.1 KO and one E18.5 diaphragm from bCat cKO embryo were analyzed by FFPE Visium Spatial Transcriptomics - Members: [visium-spatial-gene-expression-diaphragm-mrml5zirfa7pgzzf0000](/datasets/md/43.md#visium-spatial-gene-expression-diaphragm-mrml5zirfa7pgzzf0000), [visium-spatial-gene-expression-diaphragm-ppjytfn0xuagqfci0000](/datasets/md/ef.md#visium-spatial-gene-expression-diaphragm-ppjytfn0xuagqfci0000), [visium-spatial-gene-expression-diaphragm-sxyuhpbppz3tt5xa0000](/datasets/md/5b.md#visium-spatial-gene-expression-diaphragm-sxyuhpbppz3tt5xa0000), [visium-spatial-gene-expression-diaphragm-mk7j458nksitmgxa0000](/datasets/md/d0.md#visium-spatial-gene-expression-diaphragm-mk7j458nksitmgxa0000), [visium-spatial-gene-expression-diaphragm-ty1yvyrpxczahgrx0000](/datasets/md/c6.md#visium-spatial-gene-expression-diaphragm-ty1yvyrpxczahgrx0000), [visium-spatial-gene-expression-diaphragm-r3beum68cywd7n2f0000](/datasets/md/dc.md#visium-spatial-gene-expression-diaphragm-r3beum68cywd7n2f0000), [visium-spatial-gene-expression-diaphragm-ezzqegvzpkvlce1x0000](/datasets/md/1e.md#visium-spatial-gene-expression-diaphragm-ezzqegvzpkvlce1x0000), [visium-spatial-gene-expression-diaphragm-d0zss3byylvmnjef0000](/datasets/md/a5.md#visium-spatial-gene-expression-diaphragm-d0zss3byylvmnjef0000) ## Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver - Page: /collections/geo-gse245620/ - Kind: other - Datasets: 4 - Reference: PMID:38199298 - Design: Spatial transcriptomics on OCT-embedded tissue - Members: [visium-spatial-gene-expression-liver-odlvspqtmfqwj8gc0000](/datasets/md/36.md#visium-spatial-gene-expression-liver-odlvspqtmfqwj8gc0000), [visium-spatial-gene-expression-liver-hl02jrmihohxn8010000](/datasets/md/e8.md#visium-spatial-gene-expression-liver-hl02jrmihohxn8010000), [visium-spatial-gene-expression-liver-q3tfobvi18q0uura0000](/datasets/md/09.md#visium-spatial-gene-expression-liver-q3tfobvi18q0uura0000), [visium-spatial-gene-expression-liver-kxzeihodoezcxfdk0000](/datasets/md/92.md#visium-spatial-gene-expression-liver-kxzeihodoezcxfdk0000) ## Spatial transcriptomics of primary human hepatoblastomas - Page: /collections/geo-gse249965/ - Kind: comparison - Datasets: 3 - Reference: PMID:39567523 - Design: Spatial transcriptomics was performed on FFPE sections from two human hepatoblastomas and one adjacent normal liver using the 10x Visium platform. - Members: [visium-spatial-gene-expression-liver-hoic4hzqzc05bepb0000](/datasets/md/43.md#visium-spatial-gene-expression-liver-hoic4hzqzc05bepb0000), [visium-spatial-gene-expression-liver-cwhhxvsjck9d7i6y0000](/datasets/md/d2.md#visium-spatial-gene-expression-liver-cwhhxvsjck9d7i6y0000), [visium-spatial-gene-expression-liver-xh9tqxgqtlou8mik0000](/datasets/md/6c.md#visium-spatial-gene-expression-liver-xh9tqxgqtlou8mik0000) ## Early human fetal lung atlas reveals the temporal dynamics of epithelial cell plasticity [Visium] - Page: /collections/geo-gse264398/ - Kind: other - Datasets: 2 - Reference: PMID:39003323 - Design: Two archived FFPE fetal lung tissues (GW 15 and 18) were freshly sectioned and analyzed through 10X Visium. - Members: [visium-spatial-gene-expression-lung-dqvfg6twfj6eer7o0000](/datasets/md/c0.md#visium-spatial-gene-expression-lung-dqvfg6twfj6eer7o0000), [visium-spatial-gene-expression-lung-wtfsudconqvgygsj0000](/datasets/md/fb.md#visium-spatial-gene-expression-lung-wtfsudconqvgygsj0000) ## snPATHO-seq: unlocking the FFPE archives for single nucleus RNA profiling [Visium] - Page: /collections/geo-gse268427/ - Kind: comparison - Datasets: 3 - Reference: PMID:39414943 - Design: 5um thick tissue sections were obtained from 3 breast cancer tissue FFPE blocks and processed for FFPE Visium V2 chemistry using the CytAssist machine for processing. - Members: [visium-spatial-gene-expression-liver-vzl6d5uoogwadafz0000](/datasets/md/e5.md#visium-spatial-gene-expression-liver-vzl6d5uoogwadafz0000), [visium-spatial-gene-expression-liver-ulz65vlzwm9xkexp0000](/datasets/md/d9.md#visium-spatial-gene-expression-liver-ulz65vlzwm9xkexp0000), [visium-spatial-gene-expression-breast-curhqcxdhkucdjdt0000](/datasets/md/ba.md#visium-spatial-gene-expression-breast-curhqcxdhkucdjdt0000) ## The roles of glioma-associated macrophages/microglia in human GBM - Page: /collections/geo-gse273432/ - Kind: other - Datasets: 4 - Reference: PMID:39921277 - Design: Three GBM cancer patient-derived FFPE tumor tissue (4 samples) were used for the analysis. Expression of each GAM markers were analyzed using 10x Genomics Visium. - Members: [visium-spatial-gene-expression-brain-t1o6f9eye6poo4na0000](/datasets/md/1b.md#visium-spatial-gene-expression-brain-t1o6f9eye6poo4na0000), [visium-spatial-gene-expression-brain-3ufftpyulwstdn6z0000](/datasets/md/04.md#visium-spatial-gene-expression-brain-3ufftpyulwstdn6z0000), [visium-spatial-gene-expression-brain-se8nssmygupdssps0000](/datasets/md/45.md#visium-spatial-gene-expression-brain-se8nssmygupdssps0000), [visium-spatial-gene-expression-brain-zdce1ytlruxuswxl0000](/datasets/md/9e.md#visium-spatial-gene-expression-brain-zdce1ytlruxuswxl0000) ## Delineation of a thrombin receptor-stimulated vascular smooth muscle cell transition to a plaque-stabilising fibrous cap-associated state - Page: /collections/geo-gse274572/ - Kind: other - Datasets: 3 - Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE274572 - Design: This entry contains data from the following analyses: (1) 10X single-cell RNA-seq analysis of VSMC-lineage labeled cells isolated by flow-assisted cell sorting (FACS) from healthy control and and ligated left carotid arteries (11 days after surgery) of Myh11-EYFP animals. (2) 10X Visium spatial transcriptomic analysis of an early-stage human plaque from an aorta (54-year-old male). - Members: [visium-spatial-gene-expression-artery-xy3auegshr10xm6e0000](/datasets/md/bd.md#visium-spatial-gene-expression-artery-xy3auegshr10xm6e0000), [visium-spatial-gene-expression-artery-sxj66wo5ax2tg8t10000](/datasets/md/01.md#visium-spatial-gene-expression-artery-sxj66wo5ax2tg8t10000), [visium-spatial-gene-expression-artery-t9pwbeinnxsgowue0000](/datasets/md/ad.md#visium-spatial-gene-expression-artery-t9pwbeinnxsgowue0000) ## RNase L represses hair follicle regeneration through altered innate immune signaling. - Page: /collections/geo-gse278431/ - Kind: comparison - Datasets: 6 - Reference: 10.1172/JCI172595 - Design: The dorsal side of male and female 3-week-old (21 days) mice were shaved at approximately 8-11g of weight. Using surgical scissors approximately 1.26 cm2 X 1.25cm2 of skin was excised creating wounds deep into the fascia. Using the 10X Genomics Xenium platform we generated a spatial transcriptomics dataset of 100 custom genes and 379 genes from the 2023 "mMulti_v1" list from wildtype (C57BL/6 n = 3)and Rnasel knockout (Rnaseltm1Slvm n =3) mice at scab detachment day 0. - Members: [10x-xenium-hair-follicle-1qjj09airt0hg0yx0000](/datasets/md/07.md#10x-xenium-hair-follicle-1qjj09airt0hg0yx0000), [10x-xenium-hair-follicle-j6atwbgov2w3pdfv0000](/datasets/md/e9.md#10x-xenium-hair-follicle-j6atwbgov2w3pdfv0000), [10x-xenium-hair-follicle-kvbg5v2ubugd8ggl0000](/datasets/md/2c.md#10x-xenium-hair-follicle-kvbg5v2ubugd8ggl0000), [10x-xenium-hair-follicle-izufgbwgr6inopcs0000](/datasets/md/5d.md#10x-xenium-hair-follicle-izufgbwgr6inopcs0000), [10x-xenium-hair-follicle-bmtirpxkuxicflt40000](/datasets/md/7e.md#10x-xenium-hair-follicle-bmtirpxkuxicflt40000), [10x-xenium-hair-follicle-9tpa63dqkuxxuaqy0000](/datasets/md/cb.md#10x-xenium-hair-follicle-9tpa63dqkuxxuaqy0000) ## Integrative Spatial Multi-Omics Reveal Niche-Specific Inflammatory Signaling and Differentiation Hierarchies in Acute Myeloid Leukemia - Page: /collections/geo-gse279576/ - Kind: other - Datasets: 6 - Reference: PMID:41536977 - Design: Bone Marrow (BM) and Extramedularry (EM) tissue biopsies were routinely collected before treatment initiation from 2 patients with newly diagnosed AML. The samples were formalin fixed, and BM samples were decalcified using 10% formic acid. Following fixation and decalcification, the samples were embedded in paraffin and stored at room temperature before they were cut into 4-µm sections. Visium Spatial Gene Expression (Direct placement; v1) and Visium CytAssist Spatial Gene Expression (CytAssist-enabled; v2) protocols apllied on each BM and EM samples. Libraries sequenced using Illumina NovaSeq 6000. - Members: [visium-spatial-gene-expression-mediastinal-lymph-node-tofxpxaukqkrgb4i0000](/datasets/md/93.md#visium-spatial-gene-expression-mediastinal-lymph-node-tofxpxaukqkrgb4i0000), [visium-spatial-gene-expression-bone-marrow-dnkpgrucjdpcwvmc0000](/datasets/md/9d.md#visium-spatial-gene-expression-bone-marrow-dnkpgrucjdpcwvmc0000), [visium-spatial-gene-expression-skin-of-body-bpfmacokzyoe9clf0000](/datasets/md/30.md#visium-spatial-gene-expression-skin-of-body-bpfmacokzyoe9clf0000), [visium-spatial-gene-expression-bone-marrow-7ddo3nkxty9b7c3d0000](/datasets/md/d8.md#visium-spatial-gene-expression-bone-marrow-7ddo3nkxty9b7c3d0000), [visium-spatial-gene-expression-skin-of-body-dlr5ilytfg2oogbz0000](/datasets/md/20.md#visium-spatial-gene-expression-skin-of-body-dlr5ilytfg2oogbz0000), [visium-spatial-gene-expression-mediastinal-lymph-node-brv9fsf7wglhmcde0000](/datasets/md/2d.md#visium-spatial-gene-expression-mediastinal-lymph-node-brv9fsf7wglhmcde0000) ## Spatiotemporal dynamics of the cardioimmune niche during lesion repair [spatial] - Page: /collections/geo-gse280376/ - Kind: comparison - Datasets: 7 - Reference: PMID:41184578 - Design: Cryoablation of the left ventricle (Cryo) was used as the mouse models to introduce ventricular lesions. After recovery of animals from lesion induction, we isolate the LV. 5μm formalin-fixed paraffin-embedded tissue sections (transverse plane of the LV) were mounted on a Xenium slide within the desired imaging region. - Members: [10x-xenium-heart-left-ventricle-3yusb5quv0l8twzo0000](/datasets/md/33.md#10x-xenium-heart-left-ventricle-3yusb5quv0l8twzo0000), [10x-xenium-heart-left-ventricle-wza1pwwr7pe1zp0m0000](/datasets/md/ca.md#10x-xenium-heart-left-ventricle-wza1pwwr7pe1zp0m0000), [10x-xenium-heart-left-ventricle-v9yp12g9j18zijtz0000](/datasets/md/51.md#10x-xenium-heart-left-ventricle-v9yp12g9j18zijtz0000), [10x-xenium-heart-left-ventricle-ihleho7zct6ptlb80000](/datasets/md/10.md#10x-xenium-heart-left-ventricle-ihleho7zct6ptlb80000), [10x-xenium-heart-left-ventricle-rxbwt7dkgwozzqfn0000](/datasets/md/0b.md#10x-xenium-heart-left-ventricle-rxbwt7dkgwozzqfn0000), [10x-xenium-heart-left-ventricle-xwkj2zsjjarmlz6p0000](/datasets/md/4b.md#10x-xenium-heart-left-ventricle-xwkj2zsjjarmlz6p0000), [10x-xenium-heart-left-ventricle-xvmrmiglwjbz0qzq0000](/datasets/md/7a.md#10x-xenium-heart-left-ventricle-xvmrmiglwjbz0qzq0000) ## Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity - Page: /collections/geo-gse292299/ - Kind: time course - Datasets: 18 - Reference: PMID:42664957 - Design: 18 tissue sections representing 16 pre-treatment NSCLC tumors and 2 pre-treatment DLBCL tumors were subject to spatial transcriptomics using the 10x Genomics Visium platform, followed by high throughput sequencing. Raw data not submitted due to patient privacy concerns. *************************************************************** Raw files for human/patient samples were not submitted to GEO due to concerns about submitting personally identifiable sequence data for open access. *************************************************************** - Members: [visium-spatial-gene-expression-brain-tw3c6lyks5djh0wv0000](/datasets/md/dd.md#visium-spatial-gene-expression-brain-tw3c6lyks5djh0wv0000), [visium-spatial-gene-expression-cheek-7yj4bymmmun4vxvz0000](/datasets/md/bf.md#visium-spatial-gene-expression-cheek-7yj4bymmmun4vxvz0000), [visium-spatial-gene-expression-pleura-z43yqpqeaxuqnmlu0000](/datasets/md/1c.md#visium-spatial-gene-expression-pleura-z43yqpqeaxuqnmlu0000), [visium-spatial-gene-expression-lung-apcgmipham2cyayn0000](/datasets/md/25.md#visium-spatial-gene-expression-lung-apcgmipham2cyayn0000), [visium-spatial-gene-expression-brain-6fdvmspdgfnkcnpw0000](/datasets/md/d2.md#visium-spatial-gene-expression-brain-6fdvmspdgfnkcnpw0000), [visium-spatial-gene-expression-lymph-node-yo0hw4mnspyq7jo40000](/datasets/md/c7.md#visium-spatial-gene-expression-lymph-node-yo0hw4mnspyq7jo40000), [visium-spatial-gene-expression-pleura-v49vryy5zs22jxc40000](/datasets/md/1e.md#visium-spatial-gene-expression-pleura-v49vryy5zs22jxc40000), [visium-spatial-gene-expression-brain-kzbdwmmq94x9bg8x0000](/datasets/md/c0.md#visium-spatial-gene-expression-brain-kzbdwmmq94x9bg8x0000), [visium-spatial-gene-expression-lung-b1phbgo66lq15oil0000](/datasets/md/b7.md#visium-spatial-gene-expression-lung-b1phbgo66lq15oil0000), [visium-spatial-gene-expression-lung-ki3j6vpkjavwuppy0000](/datasets/md/a2.md#visium-spatial-gene-expression-lung-ki3j6vpkjavwuppy0000), [visium-spatial-gene-expression-lymph-node-60m3mxu8ojuylnyc0000](/datasets/md/56.md#visium-spatial-gene-expression-lymph-node-60m3mxu8ojuylnyc0000), [visium-spatial-gene-expression-lung-ga0atnhp50le7usk0000](/datasets/md/12.md#visium-spatial-gene-expression-lung-ga0atnhp50le7usk0000), [visium-spatial-gene-expression-brain-hdvrybrl6ihshplt0000](/datasets/md/89.md#visium-spatial-gene-expression-brain-hdvrybrl6ihshplt0000), [visium-spatial-gene-expression-brain-1auknaaygjwofffx0000](/datasets/md/3d.md#visium-spatial-gene-expression-brain-1auknaaygjwofffx0000), [visium-spatial-gene-expression-brain-sqmtrebdbhpvnztm0000](/datasets/md/53.md#visium-spatial-gene-expression-brain-sqmtrebdbhpvnztm0000), [visium-spatial-gene-expression-brain-iqttst8ifb9k5rgt0000](/datasets/md/31.md#visium-spatial-gene-expression-brain-iqttst8ifb9k5rgt0000), [visium-spatial-gene-expression-lymph-node-5b9yvg1y00nalec40000](/datasets/md/d6.md#visium-spatial-gene-expression-lymph-node-5b9yvg1y00nalec40000), [visium-spatial-gene-expression-brain-86yq9z3ut3soqax10000](/datasets/md/89.md#visium-spatial-gene-expression-brain-86yq9z3ut3soqax10000) ## Cellular Signatures of Melanocortin Pathway Genes Across the Locus Coeruleus [Spatial Transcriptomics] - Page: /collections/geo-gse327441/ - Kind: other - Datasets: 4 - Reference: PMID:41935248 - Design: Postmortem human locus coeruleus (LC) tissue from one neurotypical adult female donor (76 years old) was profiled by Visium spatial transcriptomics across four sections (Upper Rostral, Lower Rostral, Upper Caudal, Lower Caudal) to map the spatial distribution of melanocortin pathway genes and co-expression with Alzheimer's disease-associated genes at spot resolution across the LC. *************************************************************** Raw files for human/patient samples were not submitted to GEO due to concerns about submitting personally identifiable sequence data for open access. *************************************************************** - Members: [visium-spatial-gene-expression-locus-ceruleus-iscos9dvimtdonva0000](/datasets/md/ca.md#visium-spatial-gene-expression-locus-ceruleus-iscos9dvimtdonva0000), [visium-spatial-gene-expression-locus-ceruleus-pmbyz9qokohkgwhl0000](/datasets/md/7e.md#visium-spatial-gene-expression-locus-ceruleus-pmbyz9qokohkgwhl0000), [visium-spatial-gene-expression-locus-ceruleus-clm0fn3w6habfduy0000](/datasets/md/38.md#visium-spatial-gene-expression-locus-ceruleus-clm0fn3w6habfduy0000), [visium-spatial-gene-expression-locus-ceruleus-wzlorxg6dib7sxcv0000](/datasets/md/aa.md#visium-spatial-gene-expression-locus-ceruleus-wzlorxg6dib7sxcv0000) ## Overlapping yet distinct spatiomolecular profiles across mood disorders and biological sex in the human prefrontal cortex - Page: /collections/geo-gse333974/ - Kind: comparison - Datasets: 114 - Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE333974 - Design: Cryosections of the dlPFC (BA46) from 119 fresh frozen human brains from neurotypical control donors (N=40, 20 female), MDD donors (N=39, 20 female), and BD donors (N=40, 20 female). dlPFC sections were sequenced with Visium 3' Spatial Transcriptomics (55um spots, 6.5mm x 6.5mm sequencing area) and gene expression differences were evaluated for the interaction between sex and diagnosis, as well as dlPFC domain. *************************************************************** Raw files for human/patient samples are being made available in NIH-NDA for controlled access to the personally identifiable sequence data. *************************************************************** - Members: [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tmcru60liq1eh5lt0000](/datasets/md/14.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tmcru60liq1eh5lt0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-p2alvjtyfrnj14iy0001](/datasets/md/8d.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-p2alvjtyfrnj14iy0001), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-dtxocbcupjpn242d0001](/datasets/md/d9.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-dtxocbcupjpn242d0001), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-60nvot9oqcgu3paq0001](/datasets/md/77.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-60nvot9oqcgu3paq0001), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-nnrtfyephsqv2bmx0000](/datasets/md/f7.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-nnrtfyephsqv2bmx0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-udodldq8ygwpxfhx0001](/datasets/md/e2.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-udodldq8ygwpxfhx0001), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-zaaj7qx2jvxczg9l0001](/datasets/md/d6.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-zaaj7qx2jvxczg9l0001), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-thnmsppoj9hf7jet0000](/datasets/md/e7.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-thnmsppoj9hf7jet0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-cjtno15lafx7dybd0000](/datasets/md/3d.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-cjtno15lafx7dybd0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-i744eybnorinl2q40001](/datasets/md/eb.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-i744eybnorinl2q40001), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-p21rg2lajrnz8bjh0000](/datasets/md/ca.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-p21rg2lajrnz8bjh0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-gx2ftbadtepfzdm10000](/datasets/md/c3.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-gx2ftbadtepfzdm10000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-omhgg9yubpt1utpg0000](/datasets/md/e2.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-omhgg9yubpt1utpg0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-b8klydjmnps5w5n00000](/datasets/md/fc.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-b8klydjmnps5w5n00000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ixdni014crwpdhvj0000](/datasets/md/76.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ixdni014crwpdhvj0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-q7i44helb4bfxhrq0000](/datasets/md/cb.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-q7i44helb4bfxhrq0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-kakxamkzoaadnatq0000](/datasets/md/c9.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-kakxamkzoaadnatq0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-48jaffvqvdv1zltl0000](/datasets/md/fb.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-48jaffvqvdv1zltl0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-n3yglwsp6mz1pvyw0000](/datasets/md/80.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-n3yglwsp6mz1pvyw0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-nekvv91cncpbwtwh0000](/datasets/md/3d.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-nekvv91cncpbwtwh0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-clzqpasmuwl1z9ok0000](/datasets/md/b0.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-clzqpasmuwl1z9ok0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-2fjphwbzichw99xj0000](/datasets/md/cf.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-2fjphwbzichw99xj0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-r7crwhbynlg81x780000](/datasets/md/25.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-r7crwhbynlg81x780000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-juxqj59a8bppp2ll0000](/datasets/md/15.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-juxqj59a8bppp2ll0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ha27oe07ca54smok0000](/datasets/md/d2.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ha27oe07ca54smok0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-mlivcaji7bo3wtw50000](/datasets/md/72.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-mlivcaji7bo3wtw50000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-bsbx7qvztl9f4nti0000](/datasets/md/5b.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-bsbx7qvztl9f4nti0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-emcmiwqzjx3osi0k0000](/datasets/md/cb.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-emcmiwqzjx3osi0k0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-acdgl2ngpcncrov20000](/datasets/md/44.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-acdgl2ngpcncrov20000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-vkgigalvhgdpmgvg0000](/datasets/md/b3.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-vkgigalvhgdpmgvg0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-dn0gjl8bj9cezi2x0000](/datasets/md/d8.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-dn0gjl8bj9cezi2x0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-qqdxnrkgc6i2emzh0000](/datasets/md/88.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-qqdxnrkgc6i2emzh0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tvbrscuxl53vpial0000](/datasets/md/7b.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tvbrscuxl53vpial0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-rgaej9wsuhp2pppy0000](/datasets/md/6d.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-rgaej9wsuhp2pppy0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-hgujphcanevq6yrp0000](/datasets/md/21.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-hgujphcanevq6yrp0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ibfdn7oebiunvvko0000](/datasets/md/29.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ibfdn7oebiunvvko0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-w8nubwnskwxslmwj0000](/datasets/md/1e.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-w8nubwnskwxslmwj0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-n4evnzla0rg0om560000](/datasets/md/7d.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-n4evnzla0rg0om560000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-wgreusrm8yjdkv3d0000](/datasets/md/62.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-wgreusrm8yjdkv3d0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-nxogmuwopdmz61rj0000](/datasets/md/4c.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-nxogmuwopdmz61rj0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-5zjndxvdz4ckw5uj0000](/datasets/md/96.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-5zjndxvdz4ckw5uj0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-otnghyv8acmxucf60000](/datasets/md/1b.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-otnghyv8acmxucf60000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-qjrovlmkki42tkiw0000](/datasets/md/33.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-qjrovlmkki42tkiw0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-jrjmyx40xu41mqzl0000](/datasets/md/00.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-jrjmyx40xu41mqzl0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-weo8mvgnoyhi1hit0000](/datasets/md/67.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-weo8mvgnoyhi1hit0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-hse4mbb53c91bhtj0000](/datasets/md/50.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-hse4mbb53c91bhtj0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-fzxjfdhpzn2i5ibr0000](/datasets/md/a0.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-fzxjfdhpzn2i5ibr0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-43smtc4mtkago6ex0000](/datasets/md/5f.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-43smtc4mtkago6ex0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-oepzurb4r50gf82m0000](/datasets/md/82.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-oepzurb4r50gf82m0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-6nzdajddq0km5x8y0000](/datasets/md/57.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-6nzdajddq0km5x8y0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-englsgy128xa7skh0000](/datasets/md/69.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-englsgy128xa7skh0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-uacupx6lwbuwokzh0000](/datasets/md/86.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-uacupx6lwbuwokzh0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-bnbrmxa9hjikv2jm0000](/datasets/md/25.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-bnbrmxa9hjikv2jm0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-sbasglxwkouczbap0000](/datasets/md/0a.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-sbasglxwkouczbap0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tltbh338lbcsup7w0000](/datasets/md/8e.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tltbh338lbcsup7w0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-z7wy0iop4x3v4srf0000](/datasets/md/4c.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-z7wy0iop4x3v4srf0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-cfqgujqgyj7kmco80000](/datasets/md/74.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-cfqgujqgyj7kmco80000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ou4ca0pkd5s6vb7h0000](/datasets/md/7c.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ou4ca0pkd5s6vb7h0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-p7lzs8pbrmjfhnbd0000](/datasets/md/f3.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-p7lzs8pbrmjfhnbd0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ix5aoatiog3awzja0000](/datasets/md/b1.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ix5aoatiog3awzja0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-qazsjzx3gx4iyibp0000](/datasets/md/46.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-qazsjzx3gx4iyibp0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-5egwc033el39plqh0000](/datasets/md/b3.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-5egwc033el39plqh0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-dehv6i8fmxyujceq0000](/datasets/md/94.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-dehv6i8fmxyujceq0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-sbofoevvmdlh0xdo0000](/datasets/md/90.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-sbofoevvmdlh0xdo0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-zcxgqqntkzji3goe0000](/datasets/md/e6.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-zcxgqqntkzji3goe0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-rpfh8vns5b8x2ktc0000](/datasets/md/a4.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-rpfh8vns5b8x2ktc0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-76hrnlyelaqyarbu0000](/datasets/md/22.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-76hrnlyelaqyarbu0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-dxzzq0yln73x2z0s0000](/datasets/md/41.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-dxzzq0yln73x2z0s0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-onkjyjkhoxievtau0000](/datasets/md/9e.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-onkjyjkhoxievtau0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-14imxsxtffosasa20000](/datasets/md/98.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-14imxsxtffosasa20000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-iwy8gdl7lstmerr00000](/datasets/md/86.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-iwy8gdl7lstmerr00000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-iduljduq3kihhfw10000](/datasets/md/b3.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-iduljduq3kihhfw10000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-yo0a16nhkv1mtsm20000](/datasets/md/26.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-yo0a16nhkv1mtsm20000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-9agreaeour7slpoy0000](/datasets/md/31.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-9agreaeour7slpoy0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-pdkkglhra0f8jf3u0000](/datasets/md/77.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-pdkkglhra0f8jf3u0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-g4gspnger3kgu8zf0000](/datasets/md/43.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-g4gspnger3kgu8zf0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-lvsuj3jwae0uzvc00000](/datasets/md/1b.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-lvsuj3jwae0uzvc00000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-phpfcihgjcljesla0000](/datasets/md/a2.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-phpfcihgjcljesla0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-us801uyw5ucsikhq0000](/datasets/md/0b.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-us801uyw5ucsikhq0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-knctsupjqhcr0t8a0000](/datasets/md/07.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-knctsupjqhcr0t8a0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-c6xtnsilwbiypfyo0000](/datasets/md/be.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-c6xtnsilwbiypfyo0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tpmxmej1o5dnoh1s0000](/datasets/md/1e.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tpmxmej1o5dnoh1s0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-p9u6dcacbshqttr70000](/datasets/md/89.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-p9u6dcacbshqttr70000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-eghbacnc3hddcp4p0000](/datasets/md/0f.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-eghbacnc3hddcp4p0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-fxdj3ctgfisbq0jw0000](/datasets/md/a1.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-fxdj3ctgfisbq0jw0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-hrumpwfhp7fdj6yi0000](/datasets/md/0e.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-hrumpwfhp7fdj6yi0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-l1hg0fq1l1kzz3ls0000](/datasets/md/d9.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-l1hg0fq1l1kzz3ls0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-k2bk3x2vryuyautv0000](/datasets/md/32.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-k2bk3x2vryuyautv0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-1icacjfoyvgqiqgi0000](/datasets/md/92.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-1icacjfoyvgqiqgi0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-p9gdllbzkdwzaowh0000](/datasets/md/0a.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-p9gdllbzkdwzaowh0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-fkfaq3uxunyoqtgx0000](/datasets/md/41.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-fkfaq3uxunyoqtgx0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ig3llvoplv3qfvtm0000](/datasets/md/00.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ig3llvoplv3qfvtm0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-vjmzsi2jdawkxq5q0000](/datasets/md/f6.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-vjmzsi2jdawkxq5q0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-saky1rbfx4uwczlz0000](/datasets/md/d4.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-saky1rbfx4uwczlz0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-1cdbrpcso72krpik0000](/datasets/md/f5.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-1cdbrpcso72krpik0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-r22u6wi69shrfmbe0000](/datasets/md/84.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-r22u6wi69shrfmbe0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-gizwrikghnpj7xci0000](/datasets/md/1c.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-gizwrikghnpj7xci0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-fdwpc8rgrqdgeqdn0000](/datasets/md/d8.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-fdwpc8rgrqdgeqdn0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-nqsgtr3ha67ygbta0000](/datasets/md/b6.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-nqsgtr3ha67ygbta0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-etth9vixdy7sqax20000](/datasets/md/03.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-etth9vixdy7sqax20000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-fvxexwtef3lef4lf0000](/datasets/md/65.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-fvxexwtef3lef4lf0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-r92zrjktkgqxcgf20000](/datasets/md/c3.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-r92zrjktkgqxcgf20000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ylpbnwsllvoqtcae0000](/datasets/md/9c.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-ylpbnwsllvoqtcae0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-zy6q3lcccfpskrqc0000](/datasets/md/48.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-zy6q3lcccfpskrqc0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tmj7hmhvyw2trt2h0000](/datasets/md/dc.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tmj7hmhvyw2trt2h0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-kp5gmpvfo3osastd0000](/datasets/md/8e.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-kp5gmpvfo3osastd0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-jxi4ugqg7tczgv960000](/datasets/md/56.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-jxi4ugqg7tczgv960000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tfcemxfwtvs58bby0000](/datasets/md/88.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tfcemxfwtvs58bby0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-x6f5o3zs6uq7idjq0000](/datasets/md/c6.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-x6f5o3zs6uq7idjq0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-io4nmlzdtchvmqa80000](/datasets/md/48.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-io4nmlzdtchvmqa80000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-xy3wumuhiwj5rgcd0000](/datasets/md/41.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-xy3wumuhiwj5rgcd0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-3h2dlkv18y7pqo7h0000](/datasets/md/9f.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-3h2dlkv18y7pqo7h0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tu5xtviozxayzg7b0000](/datasets/md/98.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-tu5xtviozxayzg7b0000), [visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-mhxq02gt0gdiqhem0000](/datasets/md/ac.md#visium-spatial-gene-expression-dorsolateral-prefrontal-cortex-mhxq02gt0gdiqhem0000) ## Integrated bulk and spatial transcriptomic analysis identifies progression-associated molecular signatures in biopsy-proven hypertensive nephropathy [Spatial Transcriptomics] - Page: /collections/geo-gse339455/ - Kind: comparison - Datasets: 4 - Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE339455 - Design: Hypertensive nephropathy were identified in the Norwegian Kidney Biopsy Registry These patients were labelled as progressor or stable, early or late depending on their clinical outcome, with at least 5 years of follow up. Three samples from each group (twelve in total) were assembled into one histological slide and subjected to spatial transcriptomic, performed accordingly to Visium Cytassist. Samples were sequenced with Novoseq 6000 - Members: [visium-spatial-gene-expression-kidney-agcg52fnyxxzoktd0000](/datasets/md/5e.md#visium-spatial-gene-expression-kidney-agcg52fnyxxzoktd0000), [visium-spatial-gene-expression-kidney-hktjo0stveirzv1c0000](/datasets/md/08.md#visium-spatial-gene-expression-kidney-hktjo0stveirzv1c0000), [visium-spatial-gene-expression-kidney-ftsnuubhuq4wga1l0000](/datasets/md/ef.md#visium-spatial-gene-expression-kidney-ftsnuubhuq4wga1l0000), [visium-spatial-gene-expression-kidney-sehlo0pi1f1rtn7t0000](/datasets/md/9f.md#visium-spatial-gene-expression-kidney-sehlo0pi1f1rtn7t0000) ## Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues. - Page: /collections/geo-gsm9238730/ - Kind: publication - Datasets: 1 - Reference: 10.1038/s41467-025-64990-y - Members: [vizgen-merscope-unknown-iggakun6hjhxtk450000](/datasets/md/ff.md#vizgen-merscope-unknown-iggakun6hjhxtk450000)