# SpatialData-DB collections, shard b

Generated from catalog release catalog-2026-11-01. Each collection has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="oliveira-2024-colorectal"></a>
## Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling

- Page: /collections/oliveira-2024-colorectal/
- Kind: publication
- Datasets: 11
- Reference: 10.1101/2024.06.04.597233
- Members: [visium-hd-colon-4ogpqtscryc4veqe0000](/datasets/md/ac.md#visium-hd-colon-4ogpqtscryc4veqe0000), [visium-hd-colon-byyhe703lptspj8i0000](/datasets/md/de.md#visium-hd-colon-byyhe703lptspj8i0000), [visium-hd-colon-jgv6kursbsab5vni0000](/datasets/md/97.md#visium-hd-colon-jgv6kursbsab5vni0000), [visium-hd-colon-iaztgjxei9uber4w0000](/datasets/md/6c.md#visium-hd-colon-iaztgjxei9uber4w0000), [visium-hd-colon-zsq7fr6o0aazupue0000](/datasets/md/14.md#visium-hd-colon-zsq7fr6o0aazupue0000), [visium-spatial-gene-expression-colon-qmnnmcp2b2w5ddyn0000](/datasets/md/bc.md#visium-spatial-gene-expression-colon-qmnnmcp2b2w5ddyn0000), [visium-spatial-gene-expression-colon-etm3rex6qjg180pe0000](/datasets/md/c3.md#visium-spatial-gene-expression-colon-etm3rex6qjg180pe0000), [visium-spatial-gene-expression-colon-k3y4wdsggesejx9t0000](/datasets/md/32.md#visium-spatial-gene-expression-colon-k3y4wdsggesejx9t0000), [10x-xenium-colon-hxuglffurosfu2cc0000](/datasets/md/6a.md#10x-xenium-colon-hxuglffurosfu2cc0000), [10x-xenium-colon-odlv9hhd8502wagr0000](/datasets/md/ca.md#10x-xenium-colon-odlv9hhd8502wagr0000), [10x-xenium-colon-hoozeyrvabdc3qrr0000](/datasets/md/8b.md#10x-xenium-colon-hoozeyrvabdc3qrr0000)

<a id="abc-hmba-merscope-h22-30-001-bg"></a>
## A cross-species spatial transcriptomic atlas of the human and non-human primate basal ganglia

- Page: /collections/abc-hmba-merscope-h22-30-001-bg/
- Kind: publication
- Datasets: 81
- Reference: 10.1101/2025.11.22.688128
- Members: [vizgen-merscope-basal-ganglion-suo6dmpznotkstzu0000](/datasets/md/ea.md#vizgen-merscope-basal-ganglion-suo6dmpznotkstzu0000), [vizgen-merscope-basal-ganglion-nih5zpgoe1exs2t60000](/datasets/md/d5.md#vizgen-merscope-basal-ganglion-nih5zpgoe1exs2t60000), [vizgen-merscope-basal-ganglion-rulzwnkxbrettnxk0000](/datasets/md/92.md#vizgen-merscope-basal-ganglion-rulzwnkxbrettnxk0000), [vizgen-merscope-basal-ganglion-jjlwsqqwbr3ictdm0000](/datasets/md/a3.md#vizgen-merscope-basal-ganglion-jjlwsqqwbr3ictdm0000), [vizgen-merscope-basal-ganglion-axcc0ep9sj7fdqdn0000](/datasets/md/21.md#vizgen-merscope-basal-ganglion-axcc0ep9sj7fdqdn0000), [vizgen-merscope-basal-ganglion-b4klwrgyvpqupo4v0000](/datasets/md/02.md#vizgen-merscope-basal-ganglion-b4klwrgyvpqupo4v0000), [vizgen-merscope-basal-ganglion-nswm0rz42bor2nq70000](/datasets/md/e1.md#vizgen-merscope-basal-ganglion-nswm0rz42bor2nq70000), [vizgen-merscope-basal-ganglion-lc7jrito8dnfnm1s0000](/datasets/md/3e.md#vizgen-merscope-basal-ganglion-lc7jrito8dnfnm1s0000), [vizgen-merscope-basal-ganglion-m4nx12texlyrmy0s0000](/datasets/md/e0.md#vizgen-merscope-basal-ganglion-m4nx12texlyrmy0s0000), [vizgen-merscope-basal-ganglion-ubu9oddyhwmvfpm30000](/datasets/md/78.md#vizgen-merscope-basal-ganglion-ubu9oddyhwmvfpm30000), [vizgen-merscope-basal-ganglion-qsxjuhy61gdjfexb0000](/datasets/md/31.md#vizgen-merscope-basal-ganglion-qsxjuhy61gdjfexb0000), [vizgen-merscope-basal-ganglion-wqlmeyomtrzeqyno0000](/datasets/md/44.md#vizgen-merscope-basal-ganglion-wqlmeyomtrzeqyno0000), [vizgen-merscope-basal-ganglion-ljmgxmmdxhe4sywa0000](/datasets/md/e8.md#vizgen-merscope-basal-ganglion-ljmgxmmdxhe4sywa0000), [vizgen-merscope-basal-ganglion-55rrkmwamcdnh12e0000](/datasets/md/b9.md#vizgen-merscope-basal-ganglion-55rrkmwamcdnh12e0000), [vizgen-merscope-basal-ganglion-aqpwkizstqnnki5x0000](/datasets/md/90.md#vizgen-merscope-basal-ganglion-aqpwkizstqnnki5x0000), [vizgen-merscope-basal-ganglion-qdfys7chyol82wph0000](/datasets/md/18.md#vizgen-merscope-basal-ganglion-qdfys7chyol82wph0000), [vizgen-merscope-basal-ganglion-i2qytarjg0rfbeqr0000](/datasets/md/b7.md#vizgen-merscope-basal-ganglion-i2qytarjg0rfbeqr0000), [vizgen-merscope-basal-ganglion-n1vlfkqgxz1o6swj0000](/datasets/md/a4.md#vizgen-merscope-basal-ganglion-n1vlfkqgxz1o6swj0000), [vizgen-merscope-basal-ganglion-aaofqyga6mvphzbh0000](/datasets/md/1f.md#vizgen-merscope-basal-ganglion-aaofqyga6mvphzbh0000), [vizgen-merscope-basal-ganglion-fcvtdiywulxzgbuz0000](/datasets/md/f4.md#vizgen-merscope-basal-ganglion-fcvtdiywulxzgbuz0000), [vizgen-merscope-basal-ganglion-4v3o8nbmuglha2ax0000](/datasets/md/9d.md#vizgen-merscope-basal-ganglion-4v3o8nbmuglha2ax0000), [vizgen-merscope-basal-ganglion-xujhlgejzzz9v9yi0000](/datasets/md/79.md#vizgen-merscope-basal-ganglion-xujhlgejzzz9v9yi0000), [vizgen-merscope-basal-ganglion-ybmygbzpsuvxwnsq0000](/datasets/md/43.md#vizgen-merscope-basal-ganglion-ybmygbzpsuvxwnsq0000), [vizgen-merscope-basal-ganglion-pas6ca2wl2nuwvjq0000](/datasets/md/bf.md#vizgen-merscope-basal-ganglion-pas6ca2wl2nuwvjq0000), [vizgen-merscope-basal-ganglion-aywc2lkypfxzt4dr0000](/datasets/md/cc.md#vizgen-merscope-basal-ganglion-aywc2lkypfxzt4dr0000), [vizgen-merscope-basal-ganglion-8vfj3z5ihtyuvpf10000](/datasets/md/0d.md#vizgen-merscope-basal-ganglion-8vfj3z5ihtyuvpf10000), [vizgen-merscope-basal-ganglion-ngiminjbc5tape5j0000](/datasets/md/9e.md#vizgen-merscope-basal-ganglion-ngiminjbc5tape5j0000), [vizgen-merscope-basal-ganglion-fr1r0qahulipfxrt0000](/datasets/md/a2.md#vizgen-merscope-basal-ganglion-fr1r0qahulipfxrt0000), [vizgen-merscope-basal-ganglion-mqs0eaoms4vbp4ol0000](/datasets/md/d0.md#vizgen-merscope-basal-ganglion-mqs0eaoms4vbp4ol0000), [vizgen-merscope-basal-ganglion-0ul9ihznsckcloes0000](/datasets/md/6f.md#vizgen-merscope-basal-ganglion-0ul9ihznsckcloes0000), [vizgen-merscope-basal-ganglion-moapdfdslnsbjiuw0000](/datasets/md/1d.md#vizgen-merscope-basal-ganglion-moapdfdslnsbjiuw0000), [vizgen-merscope-basal-ganglion-pkuub8lbhgaswdk40000](/datasets/md/3c.md#vizgen-merscope-basal-ganglion-pkuub8lbhgaswdk40000), [vizgen-merscope-basal-ganglion-zo0gq0npwcbz7rg10000](/datasets/md/aa.md#vizgen-merscope-basal-ganglion-zo0gq0npwcbz7rg10000), [vizgen-merscope-basal-ganglion-a4szozzilnrcfcjm0000](/datasets/md/c0.md#vizgen-merscope-basal-ganglion-a4szozzilnrcfcjm0000), [vizgen-merscope-basal-ganglion-1ckhzxscvwmdedgo0000](/datasets/md/c8.md#vizgen-merscope-basal-ganglion-1ckhzxscvwmdedgo0000), [vizgen-merscope-basal-ganglion-fsnjjlxmkxwtr1xx0000](/datasets/md/8d.md#vizgen-merscope-basal-ganglion-fsnjjlxmkxwtr1xx0000), [vizgen-merscope-basal-ganglion-ciwpkq9w6pqkajnz0000](/datasets/md/80.md#vizgen-merscope-basal-ganglion-ciwpkq9w6pqkajnz0000), [vizgen-merscope-basal-ganglion-yu17bbpkvgt0swue0000](/datasets/md/85.md#vizgen-merscope-basal-ganglion-yu17bbpkvgt0swue0000), [vizgen-merscope-basal-ganglion-spsg8maxlblz0yoi0000](/datasets/md/e5.md#vizgen-merscope-basal-ganglion-spsg8maxlblz0yoi0000), [vizgen-merscope-basal-ganglion-iaoaeptaxmoudbpv0000](/datasets/md/92.md#vizgen-merscope-basal-ganglion-iaoaeptaxmoudbpv0000), [vizgen-merscope-basal-ganglion-vyobbmronlermpol0000](/datasets/md/a3.md#vizgen-merscope-basal-ganglion-vyobbmronlermpol0000), [vizgen-merscope-basal-ganglion-zg9rwhsksszrcfj10000](/datasets/md/10.md#vizgen-merscope-basal-ganglion-zg9rwhsksszrcfj10000), [vizgen-merscope-basal-ganglion-fdx9snsyzjaoa18o0000](/datasets/md/81.md#vizgen-merscope-basal-ganglion-fdx9snsyzjaoa18o0000), [vizgen-merscope-basal-ganglion-9i5bn4mourx0qlxp0000](/datasets/md/28.md#vizgen-merscope-basal-ganglion-9i5bn4mourx0qlxp0000), [vizgen-merscope-basal-ganglion-0mwkr8ea1ik0e2130000](/datasets/md/3c.md#vizgen-merscope-basal-ganglion-0mwkr8ea1ik0e2130000), [vizgen-merscope-basal-ganglion-ijmwgobla4qmfudr0000](/datasets/md/8f.md#vizgen-merscope-basal-ganglion-ijmwgobla4qmfudr0000), [vizgen-merscope-basal-ganglion-bwqufavooerh3jye0000](/datasets/md/4c.md#vizgen-merscope-basal-ganglion-bwqufavooerh3jye0000), [vizgen-merscope-basal-ganglion-lqytgyybubrwzvkb0000](/datasets/md/8f.md#vizgen-merscope-basal-ganglion-lqytgyybubrwzvkb0000), [vizgen-merscope-basal-ganglion-6h15go5a7dw9jkuk0000](/datasets/md/22.md#vizgen-merscope-basal-ganglion-6h15go5a7dw9jkuk0000), [vizgen-merscope-basal-ganglion-swqjkft9eqek0qdl0000](/datasets/md/2b.md#vizgen-merscope-basal-ganglion-swqjkft9eqek0qdl0000), [vizgen-merscope-basal-ganglion-auxvybegw09yodfq0000](/datasets/md/58.md#vizgen-merscope-basal-ganglion-auxvybegw09yodfq0000), [vizgen-merscope-basal-ganglion-hxju7qmqrpmmmwro0000](/datasets/md/34.md#vizgen-merscope-basal-ganglion-hxju7qmqrpmmmwro0000), [vizgen-merscope-basal-ganglion-ayxhmh1pwlhdtoqb0000](/datasets/md/43.md#vizgen-merscope-basal-ganglion-ayxhmh1pwlhdtoqb0000), [vizgen-merscope-basal-ganglion-iw3ua2wzmya62hgv0000](/datasets/md/fe.md#vizgen-merscope-basal-ganglion-iw3ua2wzmya62hgv0000), [vizgen-merscope-basal-ganglion-izgwlcn5yuuzvtzs0000](/datasets/md/3e.md#vizgen-merscope-basal-ganglion-izgwlcn5yuuzvtzs0000), [vizgen-merscope-basal-ganglion-zpd4a4bt7jz9jclv0000](/datasets/md/0f.md#vizgen-merscope-basal-ganglion-zpd4a4bt7jz9jclv0000), [vizgen-merscope-basal-ganglion-luffp3tugj7mo4xz0000](/datasets/md/3a.md#vizgen-merscope-basal-ganglion-luffp3tugj7mo4xz0000), [vizgen-merscope-basal-ganglion-7kow8jiozr2hacwz0000](/datasets/md/ba.md#vizgen-merscope-basal-ganglion-7kow8jiozr2hacwz0000), [vizgen-merscope-basal-ganglion-rdnguwlr6xlvempd0000](/datasets/md/c4.md#vizgen-merscope-basal-ganglion-rdnguwlr6xlvempd0000), [vizgen-merscope-basal-ganglion-pwn2gsdcmprr0wj90000](/datasets/md/31.md#vizgen-merscope-basal-ganglion-pwn2gsdcmprr0wj90000), [vizgen-merscope-basal-ganglion-kxhqcqjusc038mbb0000](/datasets/md/bf.md#vizgen-merscope-basal-ganglion-kxhqcqjusc038mbb0000), [vizgen-merscope-basal-ganglion-ecqledjilydgqaeq0000](/datasets/md/95.md#vizgen-merscope-basal-ganglion-ecqledjilydgqaeq0000), [vizgen-merscope-basal-ganglion-3krvnto7tdhcxg9q0000](/datasets/md/f3.md#vizgen-merscope-basal-ganglion-3krvnto7tdhcxg9q0000), [vizgen-merscope-basal-ganglion-6snb0nbsdonst4ok0000](/datasets/md/fb.md#vizgen-merscope-basal-ganglion-6snb0nbsdonst4ok0000), [vizgen-merscope-basal-ganglion-iz5yvmrmx15eb9bx0000](/datasets/md/ef.md#vizgen-merscope-basal-ganglion-iz5yvmrmx15eb9bx0000), [vizgen-merscope-basal-ganglion-lgtkhizx6oafqrgq0000](/datasets/md/c3.md#vizgen-merscope-basal-ganglion-lgtkhizx6oafqrgq0000), [vizgen-merscope-basal-ganglion-apitrz5imqjcj2mr0000](/datasets/md/1e.md#vizgen-merscope-basal-ganglion-apitrz5imqjcj2mr0000), [vizgen-merscope-basal-ganglion-gim2qgxshv9e5d6q0000](/datasets/md/28.md#vizgen-merscope-basal-ganglion-gim2qgxshv9e5d6q0000), [vizgen-merscope-basal-ganglion-7xlawr2xxbmodnp40000](/datasets/md/ce.md#vizgen-merscope-basal-ganglion-7xlawr2xxbmodnp40000), [vizgen-merscope-basal-ganglion-6nyp1hhahv31fevb0000](/datasets/md/52.md#vizgen-merscope-basal-ganglion-6nyp1hhahv31fevb0000), [vizgen-merscope-basal-ganglion-emoeemldjbrzn5qt0000](/datasets/md/cf.md#vizgen-merscope-basal-ganglion-emoeemldjbrzn5qt0000), [vizgen-merscope-basal-ganglion-0wdjaokpn0oyqgsa0000](/datasets/md/80.md#vizgen-merscope-basal-ganglion-0wdjaokpn0oyqgsa0000), [vizgen-merscope-basal-ganglion-vmfjq1hyvzugicbj0000](/datasets/md/63.md#vizgen-merscope-basal-ganglion-vmfjq1hyvzugicbj0000), [vizgen-merscope-basal-ganglion-sims9i6yqakl4sa30000](/datasets/md/9b.md#vizgen-merscope-basal-ganglion-sims9i6yqakl4sa30000), [vizgen-merscope-basal-ganglion-uy1oehkwf7loaecc0000](/datasets/md/9d.md#vizgen-merscope-basal-ganglion-uy1oehkwf7loaecc0000), [vizgen-merscope-basal-ganglion-2sbvlewqmyaaazgi0000](/datasets/md/9d.md#vizgen-merscope-basal-ganglion-2sbvlewqmyaaazgi0000), [vizgen-merscope-basal-ganglion-a3ts598ptwofcs5g0000](/datasets/md/27.md#vizgen-merscope-basal-ganglion-a3ts598ptwofcs5g0000), [vizgen-merscope-basal-ganglion-3ey4w2hiwe2qekny0000](/datasets/md/dc.md#vizgen-merscope-basal-ganglion-3ey4w2hiwe2qekny0000), [vizgen-merscope-basal-ganglion-4kshzmuv58y9mzia0000](/datasets/md/ee.md#vizgen-merscope-basal-ganglion-4kshzmuv58y9mzia0000), [vizgen-merscope-basal-ganglion-q2ktn8cbbd73unei0000](/datasets/md/db.md#vizgen-merscope-basal-ganglion-q2ktn8cbbd73unei0000), [vizgen-merscope-basal-ganglion-o7ywm8s59nfgtflu0000](/datasets/md/30.md#vizgen-merscope-basal-ganglion-o7ywm8s59nfgtflu0000)

<a id="10x-human-tonsil-data-xenium-human-multi-tissue-and-cancer-panel-1-standard"></a>
## 10x-human-tonsil-data-xenium-human-multi-tissue-and-cancer-panel-1-standard

- Page: /collections/10x-human-tonsil-data-xenium-human-multi-tissue-and-cancer-panel-1-standard/
- Kind: other
- Datasets: 2
- Members: [10x-xenium-tonsil-gam9924hb8llnsxo0001](/datasets/md/00.md#10x-xenium-tonsil-gam9924hb8llnsxo0001), [10x-xenium-tonsil-yfldiu1v2eahfvo40001](/datasets/md/24.md#10x-xenium-tonsil-yfldiu1v2eahfvo40001)

<a id="10x-fresh-frozen-mouse-colon-xenium-multimodal-cell-segmentation"></a>
## 10x-fresh-frozen-mouse-colon-xenium-multimodal-cell-segmentation

- Page: /collections/10x-fresh-frozen-mouse-colon-xenium-multimodal-cell-segmentation/
- Kind: other
- Datasets: 1
- Members: [10x-xenium-colon-xtlys1adjfkzi25v0001](/datasets/md/63.md#10x-xenium-colon-xtlys1adjfkzi25v0001)

<a id="doi-10-1016-j-cell-2019-11-025"></a>
## A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.

- Page: /collections/doi-10-1016-j-cell-2019-11-025/
- Kind: comparison
- Datasets: 19
- Reference: 10.1016/j.cell.2019.11.025
- Members: [spatial-transcriptomics-heart-ifjunjei9evk6huh0000](/datasets/md/5a.md#spatial-transcriptomics-heart-ifjunjei9evk6huh0000), [spatial-transcriptomics-heart-snk1ucee2ajwofsb0000](/datasets/md/cd.md#spatial-transcriptomics-heart-snk1ucee2ajwofsb0000), [spatial-transcriptomics-heart-hqherxpc7o6j8spr0000](/datasets/md/0e.md#spatial-transcriptomics-heart-hqherxpc7o6j8spr0000), [spatial-transcriptomics-heart-8wgjjwszg7bz50us0000](/datasets/md/d4.md#spatial-transcriptomics-heart-8wgjjwszg7bz50us0000), [spatial-transcriptomics-heart-z8minbjsy2r2vtk40000](/datasets/md/0b.md#spatial-transcriptomics-heart-z8minbjsy2r2vtk40000), [spatial-transcriptomics-heart-bghskd8vddnejhln0000](/datasets/md/f5.md#spatial-transcriptomics-heart-bghskd8vddnejhln0000), [spatial-transcriptomics-heart-a7px7jtz0vkg4rao0000](/datasets/md/d2.md#spatial-transcriptomics-heart-a7px7jtz0vkg4rao0000), [spatial-transcriptomics-heart-rkziv4yc2osrxo4v0000](/datasets/md/78.md#spatial-transcriptomics-heart-rkziv4yc2osrxo4v0000), [spatial-transcriptomics-heart-zsru1xepesabrvn10001](/datasets/md/1a.md#spatial-transcriptomics-heart-zsru1xepesabrvn10001), [spatial-transcriptomics-heart-rhgtbecnpnvncgb40000](/datasets/md/65.md#spatial-transcriptomics-heart-rhgtbecnpnvncgb40000), [spatial-transcriptomics-heart-2u0hnevfas7looez0000](/datasets/md/cd.md#spatial-transcriptomics-heart-2u0hnevfas7looez0000), [spatial-transcriptomics-heart-ssxijtbbfdn85net0000](/datasets/md/37.md#spatial-transcriptomics-heart-ssxijtbbfdn85net0000), [spatial-transcriptomics-heart-y551komeuzrstn4a0001](/datasets/md/42.md#spatial-transcriptomics-heart-y551komeuzrstn4a0001), [spatial-transcriptomics-heart-705jbvyldbrwnash0000](/datasets/md/85.md#spatial-transcriptomics-heart-705jbvyldbrwnash0000), [spatial-transcriptomics-heart-cfssrqicu10zc7or0000](/datasets/md/6d.md#spatial-transcriptomics-heart-cfssrqicu10zc7or0000), [spatial-transcriptomics-heart-5yakaf4fzpr9rrdp0000](/datasets/md/3b.md#spatial-transcriptomics-heart-5yakaf4fzpr9rrdp0000), [spatial-transcriptomics-heart-wyreo7cfc87chaoc0000](/datasets/md/12.md#spatial-transcriptomics-heart-wyreo7cfc87chaoc0000), [spatial-transcriptomics-heart-peytpmxpnzv3clvi0000](/datasets/md/fc.md#spatial-transcriptomics-heart-peytpmxpnzv3clvi0000), [spatial-transcriptomics-heart-qtv5ly6piiu8imai0000](/datasets/md/1b.md#spatial-transcriptomics-heart-qtv5ly6piiu8imai0000)

<a id="doi-10-1038-s41587-023-01937-y"></a>
## Spatial multimodal analysis of transcriptomes and metabolomes in tissues.

- Page: /collections/doi-10-1038-s41587-023-01937-y/
- Kind: comparison
- Datasets: 19
- Reference: 10.1038/s41587-023-01937-y
- Members: [visium-spatial-gene-expression-brain-m4pqapepfldrmoqb0000](/datasets/md/5c.md#visium-spatial-gene-expression-brain-m4pqapepfldrmoqb0000), [visium-spatial-gene-expression-brain-ib3mucuqwj7epxab0000](/datasets/md/99.md#visium-spatial-gene-expression-brain-ib3mucuqwj7epxab0000), [visium-spatial-gene-expression-brain-zik2fo6jomgu3ww20000](/datasets/md/61.md#visium-spatial-gene-expression-brain-zik2fo6jomgu3ww20000), [visium-spatial-gene-expression-brain-tyg9tnvdcluggjrm0000](/datasets/md/30.md#visium-spatial-gene-expression-brain-tyg9tnvdcluggjrm0000), [visium-spatial-gene-expression-brain-kqwwebdfskn0oeed0000](/datasets/md/6f.md#visium-spatial-gene-expression-brain-kqwwebdfskn0oeed0000), [visium-spatial-gene-expression-brain-96dwxqaxkextdzjr0000](/datasets/md/a6.md#visium-spatial-gene-expression-brain-96dwxqaxkextdzjr0000), [visium-spatial-gene-expression-brain-2iyiyypltwm9fb490000](/datasets/md/c0.md#visium-spatial-gene-expression-brain-2iyiyypltwm9fb490000), [visium-spatial-gene-expression-brain-lktjyxak9yywubb10000](/datasets/md/45.md#visium-spatial-gene-expression-brain-lktjyxak9yywubb10000), [visium-spatial-gene-expression-brain-nbkskwzph5hftlp80000](/datasets/md/b1.md#visium-spatial-gene-expression-brain-nbkskwzph5hftlp80000), [visium-spatial-gene-expression-brain-g5bdfmydtf7n4s5s0000](/datasets/md/fb.md#visium-spatial-gene-expression-brain-g5bdfmydtf7n4s5s0000), [visium-spatial-gene-expression-brain-15imigc3x4xzgkoe0000](/datasets/md/92.md#visium-spatial-gene-expression-brain-15imigc3x4xzgkoe0000), [visium-spatial-gene-expression-brain-unfevepbh4qyldlv0000](/datasets/md/c9.md#visium-spatial-gene-expression-brain-unfevepbh4qyldlv0000), [visium-spatial-gene-expression-brain-v6tvd0rtuztxykkf0000](/datasets/md/0d.md#visium-spatial-gene-expression-brain-v6tvd0rtuztxykkf0000), [visium-spatial-gene-expression-brain-muetbogzxsjmbkla0000](/datasets/md/35.md#visium-spatial-gene-expression-brain-muetbogzxsjmbkla0000), [visium-spatial-gene-expression-brain-1uhyfglpg7mdkhnx0000](/datasets/md/ca.md#visium-spatial-gene-expression-brain-1uhyfglpg7mdkhnx0000), [visium-spatial-gene-expression-brain-owtptj8ypi9lvlpz0000](/datasets/md/d2.md#visium-spatial-gene-expression-brain-owtptj8ypi9lvlpz0000), [visium-spatial-gene-expression-brain-u1iooaxk1wznspod0000](/datasets/md/e5.md#visium-spatial-gene-expression-brain-u1iooaxk1wznspod0000), [visium-spatial-gene-expression-brain-wyvzjuhxsq87t03y0000](/datasets/md/65.md#visium-spatial-gene-expression-brain-wyvzjuhxsq87t03y0000), [visium-spatial-gene-expression-brain-beqrrx06gbifzfux0000](/datasets/md/03.md#visium-spatial-gene-expression-brain-beqrrx06gbifzfux0000)

<a id="geo-gse200310"></a>
## Spatial transcriptome sequencing of primary nasopharyngeal carcinoma tissues

- Page: /collections/geo-gse200310/
- Kind: other
- Datasets: 2
- Reference: PMID:37024479
- Design: Spatial transcriptome analysis of the NPC microenvironment
- Members: [visium-spatial-gene-expression-nasopharynx-acb0f2sgrkeaypxa0000](/datasets/md/6b.md#visium-spatial-gene-expression-nasopharynx-acb0f2sgrkeaypxa0000), [visium-spatial-gene-expression-nasopharynx-amuinimpikn7tcqg0000](/datasets/md/16.md#visium-spatial-gene-expression-nasopharynx-amuinimpikn7tcqg0000)

<a id="geo-gse223813"></a>
## Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture

- Page: /collections/geo-gse223813/
- Kind: comparison
- Datasets: 7
- Reference: PMID:39190487
- Design: Single-cell trancriptomic profiling of C57 mouse CD45+ cells from TA, after one (D1), two (D2) and four days (D4 - see GSE161467) after CTX-induced acute sterile muscle injury and CD45+ cells from 2 month old D2.mdx GAST using high throughput sequencing (scRNA-seq, 10x Chromium V3 chemistry). Spatial trancriptomic profiling of D4 and D8 post-CTX TA muscles from WT and DBA2/J as well as 2 month old Vehicle and Prednisone-treated GAST from D2.mdx (stRNA-seq 10x Visium).
- Members: [visium-spatial-gene-expression-gastrocnemius-f9mmp899qmtazun50000](/datasets/md/a5.md#visium-spatial-gene-expression-gastrocnemius-f9mmp899qmtazun50000), [visium-spatial-gene-expression-gastrocnemius-sdmf1zzp4wewe7nd0000](/datasets/md/c3.md#visium-spatial-gene-expression-gastrocnemius-sdmf1zzp4wewe7nd0000), [visium-spatial-gene-expression-gastrocnemius-zeqbktkbjofr5mys0000](/datasets/md/26.md#visium-spatial-gene-expression-gastrocnemius-zeqbktkbjofr5mys0000), [visium-spatial-gene-expression-gastrocnemius-rntombv1enmaqfel0000](/datasets/md/54.md#visium-spatial-gene-expression-gastrocnemius-rntombv1enmaqfel0000), [visium-spatial-gene-expression-tibialis-anterior-9rhcvmfxii2im8jq0000](/datasets/md/2b.md#visium-spatial-gene-expression-tibialis-anterior-9rhcvmfxii2im8jq0000), [visium-spatial-gene-expression-tibialis-anterior-n85gem4uneisx1re0000](/datasets/md/fc.md#visium-spatial-gene-expression-tibialis-anterior-n85gem4uneisx1re0000), [visium-spatial-gene-expression-tibialis-anterior-rkxx5fwdvsh0jij80000](/datasets/md/b5.md#visium-spatial-gene-expression-tibialis-anterior-rkxx5fwdvsh0jij80000)

<a id="geo-gse226533"></a>
## Human and Murine Kidneys Contain Transcriptionally and Spatially Orthologous Resident Macrophage Subpopulations in Acute Kidney Injury

- Page: /collections/geo-gse226533/
- Kind: other
- Datasets: 2
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE226533
- Design: CD45+ immune cells were isolated from human kidney samples by Fluorescence-activated cell sorting (FACS) and a FITC tagged CD45 antibody. Visium samples include 10 micron sections of human kidneys.
- Members: [visium-spatial-gene-expression-kidney-bkqfc9nrfepsulkv0000](/datasets/md/2f.md#visium-spatial-gene-expression-kidney-bkqfc9nrfepsulkv0000), [visium-spatial-gene-expression-kidney-yybrkpbu9w1dgct40000](/datasets/md/3c.md#visium-spatial-gene-expression-kidney-yybrkpbu9w1dgct40000)

<a id="geo-gse235672"></a>
## Siglec-9 acts as an immune checkpoint molecule on macrophages in glioblastoma, restricting T cell priming and immunotherapy response [ST]

- Page: /collections/geo-gse235672/
- Kind: comparison
- Datasets: 20
- Reference: PMID:37460871
- Design: ST experiment was performed using Visium Spatial Gene Expression Kits (10x Genomics) following standard manufacturer protocols. *** We have uploaded all raw sequences to NGDC.  For human data, it is NGDC accession number HRA004677. ***
- Members: [visium-spatial-gene-expression-brain-9fdisdmrhvtvlaok0000](/datasets/md/fa.md#visium-spatial-gene-expression-brain-9fdisdmrhvtvlaok0000), [visium-spatial-gene-expression-brain-r0am3etawmpcmmmh0000](/datasets/md/af.md#visium-spatial-gene-expression-brain-r0am3etawmpcmmmh0000), [visium-spatial-gene-expression-brain-fnp9x2kboacqfk080000](/datasets/md/f7.md#visium-spatial-gene-expression-brain-fnp9x2kboacqfk080000), [visium-spatial-gene-expression-brain-56npfwqcvjivh4qg0000](/datasets/md/3a.md#visium-spatial-gene-expression-brain-56npfwqcvjivh4qg0000), [visium-spatial-gene-expression-brain-0afxfwerjassnvwu0000](/datasets/md/fe.md#visium-spatial-gene-expression-brain-0afxfwerjassnvwu0000), [visium-spatial-gene-expression-brain-bh198mqzisb9hse40000](/datasets/md/db.md#visium-spatial-gene-expression-brain-bh198mqzisb9hse40000), [visium-spatial-gene-expression-brain-yesr39ixvferfbcr0000](/datasets/md/d0.md#visium-spatial-gene-expression-brain-yesr39ixvferfbcr0000), [visium-spatial-gene-expression-brain-vj9lpni3wiq4qowl0000](/datasets/md/69.md#visium-spatial-gene-expression-brain-vj9lpni3wiq4qowl0000), [visium-spatial-gene-expression-brain-7r6augvyzmuf630b0000](/datasets/md/a3.md#visium-spatial-gene-expression-brain-7r6augvyzmuf630b0000), [visium-spatial-gene-expression-brain-gaxkxrtafwtpgnkf0000](/datasets/md/fd.md#visium-spatial-gene-expression-brain-gaxkxrtafwtpgnkf0000), [visium-spatial-gene-expression-brain-17pib8xjx6anrvux0000](/datasets/md/c4.md#visium-spatial-gene-expression-brain-17pib8xjx6anrvux0000), [visium-spatial-gene-expression-brain-md70nfl5xxei7tbf0000](/datasets/md/30.md#visium-spatial-gene-expression-brain-md70nfl5xxei7tbf0000), [visium-spatial-gene-expression-brain-rgjonr3qwd2jdit00000](/datasets/md/c2.md#visium-spatial-gene-expression-brain-rgjonr3qwd2jdit00000), [visium-spatial-gene-expression-brain-ddsg6defpn2cyofb0000](/datasets/md/48.md#visium-spatial-gene-expression-brain-ddsg6defpn2cyofb0000), [visium-spatial-gene-expression-brain-wwguxwwzkylmjdzm0000](/datasets/md/1e.md#visium-spatial-gene-expression-brain-wwguxwwzkylmjdzm0000), [visium-spatial-gene-expression-brain-aocdk6zrtlt3pb5g0000](/datasets/md/e5.md#visium-spatial-gene-expression-brain-aocdk6zrtlt3pb5g0000), [visium-spatial-gene-expression-brain-gs7qpd5dmbg6tvka0000](/datasets/md/31.md#visium-spatial-gene-expression-brain-gs7qpd5dmbg6tvka0000), [visium-spatial-gene-expression-brain-atjfrl3kjrfsvjl80000](/datasets/md/72.md#visium-spatial-gene-expression-brain-atjfrl3kjrfsvjl80000), [visium-spatial-gene-expression-brain-ze2ojeg41piicw4y0000](/datasets/md/ae.md#visium-spatial-gene-expression-brain-ze2ojeg41piicw4y0000), [visium-spatial-gene-expression-brain-vhzk2zj0n4rjnytq0000](/datasets/md/75.md#visium-spatial-gene-expression-brain-vhzk2zj0n4rjnytq0000)

<a id="geo-gse269695"></a>
## Patient-derived lymphomoids preserve the tumor architecture and allow testing response to therapies in lymphoma [Spatial Transcriptomics]

- Page: /collections/geo-gse269695/
- Kind: comparison
- Datasets: 5
- Reference: PMID:39653701
- Design: Two lymph node biopsies were used for this analysis. One biopsy was taken from a patient with DLBCL  (patient 08 in this study) and a second biopsy contained reactive lymphoid tissue ( (patient 03 in this study). In addition, for patient 08, we analysed tissue explants grown for 3 days untreated or treated with 2 mM ibrutinib or 10 mM idelalisib.
- Members: [visium-spatial-gene-expression-lymph-node-1p7omqw1gacy1jhz0000](/datasets/md/38.md#visium-spatial-gene-expression-lymph-node-1p7omqw1gacy1jhz0000), [visium-spatial-gene-expression-lymph-node-vjep4eyy4qhmxdqn0000](/datasets/md/b6.md#visium-spatial-gene-expression-lymph-node-vjep4eyy4qhmxdqn0000), [visium-spatial-gene-expression-lymph-node-kdvgduzzbvw0blvc0000](/datasets/md/7b.md#visium-spatial-gene-expression-lymph-node-kdvgduzzbvw0blvc0000), [visium-spatial-gene-expression-lymph-node-ed9klk14vkoad4qy0000](/datasets/md/f3.md#visium-spatial-gene-expression-lymph-node-ed9klk14vkoad4qy0000), [visium-spatial-gene-expression-lymph-node-ou3nbg0bnwr8n6l20000](/datasets/md/52.md#visium-spatial-gene-expression-lymph-node-ou3nbg0bnwr8n6l20000)

<a id="geo-gse250636"></a>
## Spatial transcriptomics analysis identifies a unique tumor-promoting function of the meningeal stroma in melanoma leptomeningeal disease.

- Page: /collections/geo-gse250636/
- Kind: replicates
- Datasets: 9
- Reference: PMID:38866016
- Design: This study presents five LMD samples and four extracranial metastases from two patients (denoted A and B within the sample names, included in the sample description field) profiled with Visium.
- Members: [visium-spatial-gene-expression-skin-of-body-ghoyd8u0vp5xwxjc0000](/datasets/md/42.md#visium-spatial-gene-expression-skin-of-body-ghoyd8u0vp5xwxjc0000), [visium-spatial-gene-expression-leptomeninx-5yaxlugt06fzbvqu0000](/datasets/md/ad.md#visium-spatial-gene-expression-leptomeninx-5yaxlugt06fzbvqu0000), [visium-spatial-gene-expression-skin-of-body-dvxfks6j6etoy03d0000](/datasets/md/a3.md#visium-spatial-gene-expression-skin-of-body-dvxfks6j6etoy03d0000), [visium-spatial-gene-expression-skin-of-body-rwdv5ne7yb7bqcgn0000](/datasets/md/e6.md#visium-spatial-gene-expression-skin-of-body-rwdv5ne7yb7bqcgn0000), [visium-spatial-gene-expression-leptomeninx-xgn38j15ubvyb9uj0000](/datasets/md/45.md#visium-spatial-gene-expression-leptomeninx-xgn38j15ubvyb9uj0000), [visium-spatial-gene-expression-skin-of-body-tofl1g8iv4gjg1j40000](/datasets/md/8d.md#visium-spatial-gene-expression-skin-of-body-tofl1g8iv4gjg1j40000), [visium-spatial-gene-expression-leptomeninx-psgpxzkz3hjvke3d0000](/datasets/md/50.md#visium-spatial-gene-expression-leptomeninx-psgpxzkz3hjvke3d0000), [visium-spatial-gene-expression-leptomeninx-b4neu7a4z8gr1rdt0000](/datasets/md/08.md#visium-spatial-gene-expression-leptomeninx-b4neu7a4z8gr1rdt0000), [visium-spatial-gene-expression-leptomeninx-we6klkjhi1h6llzs0000](/datasets/md/be.md#visium-spatial-gene-expression-leptomeninx-we6klkjhi1h6llzs0000)

<a id="geo-gse261958"></a>
## Multiomic analysis uncovers a continuous spectrum of differentiation and Wnt-MDK-driven immune evasion in hepatoblastoma [Spatial Transcriptomics]

- Page: /collections/geo-gse261958/
- Kind: other
- Datasets: 22
- Reference: PMID:39900120
- Design: Spatial transcriptomics of human hepatoblastoma was performed from formalin-fixed paraffin-embedded (FFPE) tissue samples using Visium Spatial Gene Expression for FFPE (10x Genomics; n=10) and Visium CytAssist Spatial Gene Expression for FFPE (10x Genomics; n=12).
- Members: [visium-spatial-gene-expression-liver-dnwbxoepqkmyz7kt0000](/datasets/md/2a.md#visium-spatial-gene-expression-liver-dnwbxoepqkmyz7kt0000), [visium-spatial-gene-expression-liver-ycd5msesx9s8gpx40000](/datasets/md/4e.md#visium-spatial-gene-expression-liver-ycd5msesx9s8gpx40000), [visium-spatial-gene-expression-liver-zptmjx9rgzlglmox0000](/datasets/md/1f.md#visium-spatial-gene-expression-liver-zptmjx9rgzlglmox0000), [visium-spatial-gene-expression-liver-rov5ebov1ybbbpcg0000](/datasets/md/d4.md#visium-spatial-gene-expression-liver-rov5ebov1ybbbpcg0000), [visium-spatial-gene-expression-liver-ozpxsivtyscxelmw0000](/datasets/md/a0.md#visium-spatial-gene-expression-liver-ozpxsivtyscxelmw0000), [visium-spatial-gene-expression-liver-jbn1uwntdljb2qjz0000](/datasets/md/64.md#visium-spatial-gene-expression-liver-jbn1uwntdljb2qjz0000), [visium-spatial-gene-expression-liver-acp72meq6zk0npie0000](/datasets/md/17.md#visium-spatial-gene-expression-liver-acp72meq6zk0npie0000), [visium-spatial-gene-expression-liver-4aetpjbetlkq5fnz0000](/datasets/md/ba.md#visium-spatial-gene-expression-liver-4aetpjbetlkq5fnz0000), [visium-spatial-gene-expression-liver-syvq65vjpthfkdzx0000](/datasets/md/bd.md#visium-spatial-gene-expression-liver-syvq65vjpthfkdzx0000), [visium-spatial-gene-expression-liver-ohzmrixreuam9mel0000](/datasets/md/61.md#visium-spatial-gene-expression-liver-ohzmrixreuam9mel0000), [visium-spatial-gene-expression-liver-zsphnxqyc6hg57ua0000](/datasets/md/33.md#visium-spatial-gene-expression-liver-zsphnxqyc6hg57ua0000), [visium-spatial-gene-expression-liver-qzot1k4k6v2yshko0000](/datasets/md/d7.md#visium-spatial-gene-expression-liver-qzot1k4k6v2yshko0000), [visium-spatial-gene-expression-liver-iouw5pmjxlilygwh0000](/datasets/md/17.md#visium-spatial-gene-expression-liver-iouw5pmjxlilygwh0000), [visium-spatial-gene-expression-liver-cigqnhwiwaxgrcey0000](/datasets/md/e4.md#visium-spatial-gene-expression-liver-cigqnhwiwaxgrcey0000), [visium-spatial-gene-expression-liver-wzurkemlu5e0b2e10000](/datasets/md/3c.md#visium-spatial-gene-expression-liver-wzurkemlu5e0b2e10000), [visium-spatial-gene-expression-liver-gkxhojxtw9suk9cz0000](/datasets/md/62.md#visium-spatial-gene-expression-liver-gkxhojxtw9suk9cz0000), [visium-spatial-gene-expression-liver-401hlsvdy3r2xfu10000](/datasets/md/bf.md#visium-spatial-gene-expression-liver-401hlsvdy3r2xfu10000), [visium-spatial-gene-expression-liver-tbkx30s9knhvslr00000](/datasets/md/3d.md#visium-spatial-gene-expression-liver-tbkx30s9knhvslr00000), [visium-spatial-gene-expression-liver-txwzx3d07rvtmtar0000](/datasets/md/71.md#visium-spatial-gene-expression-liver-txwzx3d07rvtmtar0000), [visium-spatial-gene-expression-liver-se4pa2aaf47roewn0000](/datasets/md/5c.md#visium-spatial-gene-expression-liver-se4pa2aaf47roewn0000), [visium-spatial-gene-expression-liver-omvhirlokws9r0gh0000](/datasets/md/c4.md#visium-spatial-gene-expression-liver-omvhirlokws9r0gh0000), [visium-spatial-gene-expression-liver-wkooutqhlrjmfgpd0000](/datasets/md/78.md#visium-spatial-gene-expression-liver-wkooutqhlrjmfgpd0000)

<a id="geo-gse263196"></a>
## Spatial transcriptomic sequencing data of human small cell lung cancer

- Page: /collections/geo-gse263196/
- Kind: other
- Datasets: 4
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE263196
- Design: In this design, human small cell lung cancer tissue was cryosectioned for spatial transcriptomic sequencing(10X Visium) and downstream bioinformatics analysis.
- Members: [visium-spatial-gene-expression-lung-pihlrkjb48tpxhz60000](/datasets/md/cd.md#visium-spatial-gene-expression-lung-pihlrkjb48tpxhz60000), [visium-spatial-gene-expression-lung-xxbesrv07vv001hw0000](/datasets/md/5a.md#visium-spatial-gene-expression-lung-xxbesrv07vv001hw0000), [visium-spatial-gene-expression-lung-ztwkhl0llstzphqy0000](/datasets/md/02.md#visium-spatial-gene-expression-lung-ztwkhl0llstzphqy0000), [visium-spatial-gene-expression-lung-bseshigormd38g8j0000](/datasets/md/25.md#visium-spatial-gene-expression-lung-bseshigormd38g8j0000)

<a id="geo-gse268068"></a>
## Host-Pathogen Interactions in the Plasmodium-Infected Mouse Liver at Spatial and Single-Cell Resolution (VISIUM)

- Page: /collections/geo-gse268068/
- Kind: time course
- Datasets: 4
- Reference: PMID:39160174
- Design: For this study mice were infected with 400.000 sporozoites of P.berghei ANKA and collected after 12, 24 or 38h post-infection. Control mice were challenged with salivary gland lysate of the same number of mosquitos collected for P. berghei ANKA challenges. The Visium (10X Genomics Inc.) protocol, including sequencing and computational analysis was performed for a total of 8 sections of which 4 were infected with Plasmodium berghei parasites and 4 challenged with mosquito salivary gland lysate.  samples collected after 12h and 24h and 38h. Samples were selected based on sectioning and RNA quality.
- Members: [visium-spatial-gene-expression-liver-guswn3ayjnpsxia70000](/datasets/md/61.md#visium-spatial-gene-expression-liver-guswn3ayjnpsxia70000), [visium-spatial-gene-expression-liver-vekx6mhmkspsokzq0000](/datasets/md/ee.md#visium-spatial-gene-expression-liver-vekx6mhmkspsokzq0000), [visium-spatial-gene-expression-liver-tagjlrzhwehrx2er0000](/datasets/md/52.md#visium-spatial-gene-expression-liver-tagjlrzhwehrx2er0000), [visium-spatial-gene-expression-liver-uentkiphjr5extbu0000](/datasets/md/df.md#visium-spatial-gene-expression-liver-uentkiphjr5extbu0000)

<a id="geo-gse270382"></a>
## Tau accumulation induces microglial state alterations in Alzheimer’s disease model mice (Spatial Transcriptomics)

- Page: /collections/geo-gse270382/
- Kind: other
- Datasets: 4
- Reference: PMID:39592224
- Design: Cellular mRNA in the tau-injected dKI (Tau-dKI) brain was captured on thousands of spots (each 55 μm in diameter) using oligonucleotides with spatial barcodes.
- Members: [visium-spatial-gene-expression-brain-qase9v0nimnqkxcm0000](/datasets/md/bb.md#visium-spatial-gene-expression-brain-qase9v0nimnqkxcm0000), [visium-spatial-gene-expression-brain-0yfbip4zw2txzstm0000](/datasets/md/4c.md#visium-spatial-gene-expression-brain-0yfbip4zw2txzstm0000), [visium-spatial-gene-expression-brain-stuxkehve4etilcf0000](/datasets/md/e0.md#visium-spatial-gene-expression-brain-stuxkehve4etilcf0000), [visium-spatial-gene-expression-brain-7safozxrmawwtyty0000](/datasets/md/04.md#visium-spatial-gene-expression-brain-7safozxrmawwtyty0000)

<a id="geo-gse271795"></a>
## Lgr5 Marks Stem/Progenitor Cells Contributing to Epithelial and Muscle Development in the Mouse Esophagus

- Page: /collections/geo-gse271795/
- Kind: time course
- Datasets: 4
- Reference: PMID:39164270
- Design: Embryos were harvested from WT females at E13.5 and E16.5, and esophagi were dissected from P0 neonates. Samples were fresh frozen in Tissue Freezing Medium and kept in -80 freezer before sectioning. Sections were palced on Visium Spatial Gene Expression Slide and processed according to manufacturer instructions.
- Members: [visium-spatial-gene-expression-esophagus-nfnycjjfegkko0sq0000](/datasets/md/02.md#visium-spatial-gene-expression-esophagus-nfnycjjfegkko0sq0000), [visium-spatial-gene-expression-esophagus-pai22zek8jrlbsd70000](/datasets/md/91.md#visium-spatial-gene-expression-esophagus-pai22zek8jrlbsd70000), [visium-spatial-gene-expression-esophagus-m12mnh2gjfdtxu3g0000](/datasets/md/6a.md#visium-spatial-gene-expression-esophagus-m12mnh2gjfdtxu3g0000), [visium-spatial-gene-expression-esophagus-fbhrsitmrtai4pyg0000](/datasets/md/c4.md#visium-spatial-gene-expression-esophagus-fbhrsitmrtai4pyg0000)

<a id="geo-gse273489"></a>
## Mapping the genetic landscape establishing a tumor immune microenvironment favorable for anti-PD-1 response in mice and humans (Visium).

- Page: /collections/geo-gse273489/
- Kind: comparison
- Datasets: 4
- Reference: PMID:40343794
- Design: In this study we investigated variation in responsiveness to anti-PD-1 using a model where we implanted the MC38 colorectal cancer cell line in genetically diverse host mice. To quantify differences in gene expression between tumors from responder and non-responder lines,we profiled four tumors from each of three responder lines and three non-responder lines. Of the four tumors from each line, two were treated with anti-PD-1 and two were treated with isotype control antibody.
- Members: [visium-spatial-gene-expression-colon-akagx9aij09rnvyb0000](/datasets/md/28.md#visium-spatial-gene-expression-colon-akagx9aij09rnvyb0000), [visium-spatial-gene-expression-colon-aiecaby2tpvjbmoi0000](/datasets/md/6d.md#visium-spatial-gene-expression-colon-aiecaby2tpvjbmoi0000), [visium-spatial-gene-expression-colon-mq0utwpmzxnytwje0000](/datasets/md/60.md#visium-spatial-gene-expression-colon-mq0utwpmzxnytwje0000), [visium-spatial-gene-expression-colon-qwftvqh78hio3vqa0000](/datasets/md/84.md#visium-spatial-gene-expression-colon-qwftvqh78hio3vqa0000)

<a id="geo-gse276841"></a>
## Distinct Myeloid Derived Suppressor Cell Populations in Human Glioblastoma

- Page: /collections/geo-gse276841/
- Kind: replicates
- Datasets: 2
- Reference: PMID:39818911
- Design: Patients were prospectively enrolled into this study at Johns Hopkins Hospital. Written informed consent was provided by all participants according to approved Institutional Review Board Protocol. Fresh tumor tissue and blood were collected at the time of surgery following confirmation of primary glial neoplasm on frozen section. None of the patients was treated with chemotherapy or radiation prior to tumor resection. Tumor samples span all glioma stages (Grade II, Grade III, and Grade IV). Patients undergoing anterior temporal lobectomy for seizure control were consented and non-neoplastic tissue from anterior temporal lobectomy resection was collected as control. Two patients were analyzed using spatial transcriptomics.
- Members: [visium-spatial-gene-expression-brain-uccykrpnv88ffdwr0000](/datasets/md/7a.md#visium-spatial-gene-expression-brain-uccykrpnv88ffdwr0000), [visium-spatial-gene-expression-brain-ojxcbnpmyapaof6s0000](/datasets/md/08.md#visium-spatial-gene-expression-brain-ojxcbnpmyapaof6s0000)

<a id="geo-gse280990"></a>
## Spatial Analysis of a Complete DIPG-Infiltrated Brainstem Reveals Novel Ligand-Receptor Mediators of Tumor-to-TME Crosstalk

- Page: /collections/geo-gse280990/
- Kind: other
- Datasets: 10
- Reference: PMID:39972389
- Design: In this study, we performed 10x Visium spatial transcriptomic sequencing of a complete annotated tumor-infiltrated brainstem from a single DIPG patient. Gene signatures from ten sequential tumor regions were analysed to assess mechanisms of disease progression, invasion and oncogenic interactions with the TME.  *************************************************************** Raw files for human/patient samples were not submitted to GEO due to concerns about submitting personally identifiable sequence data for open access. ***************************************************************
- Members: [visium-spatial-gene-expression-medulla-oblongata-oak2drzstv0m39wu0000](/datasets/md/4b.md#visium-spatial-gene-expression-medulla-oblongata-oak2drzstv0m39wu0000), [visium-spatial-gene-expression-medulla-oblongata-iszou4majptrnvq40000](/datasets/md/2c.md#visium-spatial-gene-expression-medulla-oblongata-iszou4majptrnvq40000), [visium-spatial-gene-expression-spinal-cord-gubdo8w7rfmm06yo0000](/datasets/md/47.md#visium-spatial-gene-expression-spinal-cord-gubdo8w7rfmm06yo0000), [visium-spatial-gene-expression-midbrain-wq978rze52qwucjo0000](/datasets/md/d6.md#visium-spatial-gene-expression-midbrain-wq978rze52qwucjo0000), [visium-spatial-gene-expression-pons-9ljnc4tteqsovphz0000](/datasets/md/da.md#visium-spatial-gene-expression-pons-9ljnc4tteqsovphz0000), [visium-spatial-gene-expression-spinal-cord-smfnrcinm8qvl6ib0000](/datasets/md/ca.md#visium-spatial-gene-expression-spinal-cord-smfnrcinm8qvl6ib0000), [visium-spatial-gene-expression-pons-nqml9ihyuem9vbo50000](/datasets/md/ae.md#visium-spatial-gene-expression-pons-nqml9ihyuem9vbo50000), [visium-spatial-gene-expression-medulla-oblongata-yzs1obadqoxg8b6a0000](/datasets/md/ed.md#visium-spatial-gene-expression-medulla-oblongata-yzs1obadqoxg8b6a0000), [visium-spatial-gene-expression-pons-yreenxyin9kwbcel0000](/datasets/md/e0.md#visium-spatial-gene-expression-pons-yreenxyin9kwbcel0000), [visium-spatial-gene-expression-pons-bgcubt5o7a4zsxvh0000](/datasets/md/16.md#visium-spatial-gene-expression-pons-bgcubt5o7a4zsxvh0000)

<a id="geo-gse282724"></a>
## FOXA1 loss drives basal/squamous de-differentiation of prostate cancer and induces an immunosuppressive tumor microenvironment

- Page: /collections/geo-gse282724/
- Kind: comparison
- Datasets: 4
- Reference: PMID:41904157
- Design: To understand the spatial organization and distribution of prostate cancer cells and immune populations wihtin the tumor microenvironment, we performed spatial transcirptomics analysis of age-matched PbCre4:Ptenf/f (P) and PbCre4:Ptenf/fFoxa1f/f (PF) mice.
- Members: [visium-spatial-gene-expression-prostate-gland-uydglopexadz3bri0000](/datasets/md/7f.md#visium-spatial-gene-expression-prostate-gland-uydglopexadz3bri0000), [visium-spatial-gene-expression-prostate-gland-edcxrds05aiktunp0000](/datasets/md/e9.md#visium-spatial-gene-expression-prostate-gland-edcxrds05aiktunp0000), [visium-spatial-gene-expression-prostate-gland-s1aucoamdrypgzoa0000](/datasets/md/89.md#visium-spatial-gene-expression-prostate-gland-s1aucoamdrypgzoa0000), [visium-spatial-gene-expression-prostate-gland-fm0faycty7gyr8pv0000](/datasets/md/4f.md#visium-spatial-gene-expression-prostate-gland-fm0faycty7gyr8pv0000)

<a id="geo-gse283145"></a>
## Multi-Omic Single-Cell Dissection of Leukemic T-Cell Lymphoma Following CAR T-Cell Therapy [Spatial Transcriptomics]

- Page: /collections/geo-gse283145/
- Kind: comparison
- Datasets: 3
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283145
- Design: Two tissue sections of a formalin-fixed paraffin-embedded (FFPE) skin sample, from a patient treated with CAR-T cells, of the left dorsal region. Three custom probe sets were developed to detect CAR-positive (cilta-cel) spots. To demonstrate the specificity of the cilta-cel custom probes, one slide with a skin sample was subjected to the Visium Spatial Protocol WITHOUT custom probes, another slide with a skin sample was subjected to the Visium Spatial Protocol WITH custom probes and an extramedullary disease sample (sample excision from the lumbar vertebral body) from a patient not treated with CAR-T cells was subjected to the Visium Spatial Protocol WITH custom probes.
- Members: [visium-spatial-gene-expression-skin-of-body-dmonhjw21wkvzlqk0001](/datasets/md/b0.md#visium-spatial-gene-expression-skin-of-body-dmonhjw21wkvzlqk0001), [visium-spatial-gene-expression-skin-of-body-l6ltkbrwvt5y5qkm0000](/datasets/md/28.md#visium-spatial-gene-expression-skin-of-body-l6ltkbrwvt5y5qkm0000), [visium-spatial-gene-expression-skin-of-body-kfkjyjyl1xgm8u9l0000](/datasets/md/36.md#visium-spatial-gene-expression-skin-of-body-kfkjyjyl1xgm8u9l0000)

<a id="geo-gse283412"></a>
## Integrated Methylation and Spatial Transcriptomic Profiling of Metaplastic Breast Cancer to Investigate Intra-tumoral Heterogeneity.

- Page: /collections/geo-gse283412/
- Kind: other
- Datasets: 8
- Reference: PMID:40790295
- Design: four cases of mixed MpBC were selected for spatial transcriptomics analysis using Visium (10X Genomics). Seven regions of interest (ROIs) were analysed across 3 cases.  *************************************************************** Raw files for human/patient samples were not submitted to GEO due to concerns about submitting personally identifiable sequence data for open access. ***************************************************************
- Members: [visium-spatial-gene-expression-breast-tptycp7xk4gdsut10000](/datasets/md/73.md#visium-spatial-gene-expression-breast-tptycp7xk4gdsut10000), [visium-spatial-gene-expression-breast-z6e2xjke5zhzzwfb0000](/datasets/md/19.md#visium-spatial-gene-expression-breast-z6e2xjke5zhzzwfb0000), [visium-spatial-gene-expression-breast-kaecpcqvrdj6osoo0000](/datasets/md/84.md#visium-spatial-gene-expression-breast-kaecpcqvrdj6osoo0000), [visium-spatial-gene-expression-breast-itvo1xwtc6dzn2o40000](/datasets/md/b4.md#visium-spatial-gene-expression-breast-itvo1xwtc6dzn2o40000), [visium-spatial-gene-expression-breast-pclncrsb2cshi2fw0000](/datasets/md/56.md#visium-spatial-gene-expression-breast-pclncrsb2cshi2fw0000), [visium-spatial-gene-expression-breast-inh0fzz109citrjc0000](/datasets/md/14.md#visium-spatial-gene-expression-breast-inh0fzz109citrjc0000), [visium-spatial-gene-expression-breast-tiz8l0fx7uwdopa40000](/datasets/md/8e.md#visium-spatial-gene-expression-breast-tiz8l0fx7uwdopa40000), [visium-spatial-gene-expression-breast-mx06bqsnugeybvjp0000](/datasets/md/e4.md#visium-spatial-gene-expression-breast-mx06bqsnugeybvjp0000)

<a id="geo-gse285246"></a>
## Spatially resolved atlas of IPF fibroblastic foci identifies that PAK2 kinase activation is involved in fibrogenesis

- Page: /collections/geo-gse285246/
- Kind: replicates
- Datasets: 9
- Reference: PMID:40675771
- Design: Lung tissue samples were obtained from three patients diagnosed with idiopathic pulmonary fibrosis (IPF) for analysis. Spatial transcriptomic analysis was performed on nine lung tissue sections derived from these three patients.
- Members: [visium-spatial-gene-expression-lung-dwxmpslvvp2ugggw0000](/datasets/md/ee.md#visium-spatial-gene-expression-lung-dwxmpslvvp2ugggw0000), [visium-spatial-gene-expression-lung-kzkq7djchtji3www0000](/datasets/md/0e.md#visium-spatial-gene-expression-lung-kzkq7djchtji3www0000), [visium-spatial-gene-expression-lung-53daonka1ulxgmt50000](/datasets/md/c3.md#visium-spatial-gene-expression-lung-53daonka1ulxgmt50000), [visium-spatial-gene-expression-lung-zv8uertml3hhbbxa0000](/datasets/md/d2.md#visium-spatial-gene-expression-lung-zv8uertml3hhbbxa0000), [visium-spatial-gene-expression-lung-krqfx70gkcnh6wpf0000](/datasets/md/57.md#visium-spatial-gene-expression-lung-krqfx70gkcnh6wpf0000), [visium-spatial-gene-expression-lung-memjy1w2jj9a8sl30000](/datasets/md/5b.md#visium-spatial-gene-expression-lung-memjy1w2jj9a8sl30000), [visium-spatial-gene-expression-lung-ufapuajhcvd2kq0s0000](/datasets/md/c3.md#visium-spatial-gene-expression-lung-ufapuajhcvd2kq0s0000), [visium-spatial-gene-expression-lung-kdnbexdqhgiie2ih0000](/datasets/md/37.md#visium-spatial-gene-expression-lung-kdnbexdqhgiie2ih0000), [visium-spatial-gene-expression-lung-nidbqizmoefoq8rm0000](/datasets/md/9d.md#visium-spatial-gene-expression-lung-nidbqizmoefoq8rm0000)

<a id="geo-gse286227"></a>
## Spatial transcriptomic profiling of the lung tissues from a patient with recurrent anti-synthetase syndrome associated interstitial lung disease after bilateral lung transplantation and one untreated patient

- Page: /collections/geo-gse286227/
- Kind: other
- Datasets: 2
- Design: Visium HD spatial transcriptomics of lung tissues from a patient who underwent bilateral lung transplantation and from an untreated ASS-ILD patient
- Members: [visium-hd-lung-ka4pk48c0pdskjfh0000](/datasets/md/b0.md#visium-hd-lung-ka4pk48c0pdskjfh0000), [visium-hd-lung-nwh8a0s10dszfewl0000](/datasets/md/ce.md#visium-hd-lung-nwh8a0s10dszfewl0000)

<a id="geo-gse290094"></a>
## Spatial Transcriptomic Profiling of the Type 2 Diabetic Coronary Microcirculation Reveals Heterogeneity Varied by Regions of the Heart [Visium]

- Page: /collections/geo-gse290094/
- Kind: comparison
- Datasets: 7
- Reference: PMID:41203872
- Design: To investigate the transcriptomic changes that occur in the complex cellular landscape of CMD, we isolated hearts from male heterozygous non-diabetic Db/db mice and male homozygous T2D db/db mouse, and we performed paired single cell RNA-sequencing (scRNA-seq) and spatial transcriptomic profiling
- Members: [visium-spatial-gene-expression-heart-k8qnrnvveqhbhfen0000](/datasets/md/2e.md#visium-spatial-gene-expression-heart-k8qnrnvveqhbhfen0000), [visium-spatial-gene-expression-heart-ykzeqm47ri8hhwng0000](/datasets/md/f6.md#visium-spatial-gene-expression-heart-ykzeqm47ri8hhwng0000), [visium-spatial-gene-expression-heart-bn2rcqvv3chlsew00000](/datasets/md/c9.md#visium-spatial-gene-expression-heart-bn2rcqvv3chlsew00000), [visium-spatial-gene-expression-heart-4mmopdjqo0sugchq0000](/datasets/md/9a.md#visium-spatial-gene-expression-heart-4mmopdjqo0sugchq0000), [visium-spatial-gene-expression-heart-b0g7nrfg9o7qwgsu0000](/datasets/md/78.md#visium-spatial-gene-expression-heart-b0g7nrfg9o7qwgsu0000), [visium-spatial-gene-expression-heart-cxabmfikhqutrhzz0000](/datasets/md/7c.md#visium-spatial-gene-expression-heart-cxabmfikhqutrhzz0000), [visium-spatial-gene-expression-heart-qjtzpk4h9swet2zj0000](/datasets/md/ac.md#visium-spatial-gene-expression-heart-qjtzpk4h9swet2zj0000)

<a id="geo-gse302160"></a>
## 4R-Tau Seeding Activity Reveals Molecular Subtypes in Progressive Supranuclear Palsy

- Page: /collections/geo-gse302160/
- Kind: comparison
- Datasets: 4
- Reference: PMID:41476155
- Design: Post-mortem tissue sections from the motor cortex of four patients with Progressive Supranuclear Palsy (PSP) (2 high seeders, 2 low seeders) were selected for spatial transcriptomics based on distinct 4R-tau seeding capacities identified via seed amplification assays. These cases showed comparable PSP stage, phenotype, and co-pathologies. They were also used in neuropathological and proteomic analyses. Tissue quality (DV200 > 50%) ensured suitability for Visium profiling.
- Members: [visium-spatial-gene-expression-primary-motor-cortex-vx0ogyqpdwbli2hj0000](/datasets/md/f1.md#visium-spatial-gene-expression-primary-motor-cortex-vx0ogyqpdwbli2hj0000), [visium-spatial-gene-expression-primary-motor-cortex-9euwqs6tf7lzhoca0000](/datasets/md/b3.md#visium-spatial-gene-expression-primary-motor-cortex-9euwqs6tf7lzhoca0000), [visium-spatial-gene-expression-primary-motor-cortex-vjwticx45oxd2ms00000](/datasets/md/f1.md#visium-spatial-gene-expression-primary-motor-cortex-vjwticx45oxd2ms00000), [visium-spatial-gene-expression-primary-motor-cortex-u5q9ptqrumd8bxh70000](/datasets/md/7b.md#visium-spatial-gene-expression-primary-motor-cortex-u5q9ptqrumd8bxh70000)

<a id="geo-gse303036"></a>
## Eye-conic' spatial transcriptomics of keratoconus corneas

- Page: /collections/geo-gse303036/
- Kind: comparison
- Datasets: 13
- Reference: PMID:41931003
- Design: Eight corneas of 8 unrelated Polish male patients with KTCN were included in the study, as well as five normal/non-affected corneas collected postmortem from 5 deceased male donors. The 10 µm-thick corneal cryosections and Visium Spatial Gene Expression Libraries were prepared and processed according to manufacturer's protocol ‘for Fresh Frozen’ (v. 1, 10x Genomics, Pleasanton, CA, USA). The paired-end sequencing was performed using a NovaSeq 6000 sequencer (Illumina, San Diego, CA, USA).
- Members: [visium-spatial-gene-expression-cornea-nbfvsblxiyt0vtey0000](/datasets/md/ed.md#visium-spatial-gene-expression-cornea-nbfvsblxiyt0vtey0000), [visium-spatial-gene-expression-cornea-tmtoh70oth6e41eq0001](/datasets/md/c7.md#visium-spatial-gene-expression-cornea-tmtoh70oth6e41eq0001), [visium-spatial-gene-expression-cornea-8zm26buiugitkk5b0000](/datasets/md/e7.md#visium-spatial-gene-expression-cornea-8zm26buiugitkk5b0000), [visium-spatial-gene-expression-cornea-f5slj2x15j9bz9220000](/datasets/md/ef.md#visium-spatial-gene-expression-cornea-f5slj2x15j9bz9220000), [visium-spatial-gene-expression-cornea-r5ls6qusjo2otst90000](/datasets/md/3d.md#visium-spatial-gene-expression-cornea-r5ls6qusjo2otst90000), [visium-spatial-gene-expression-cornea-dmwddw2gqd5ljqji0000](/datasets/md/c8.md#visium-spatial-gene-expression-cornea-dmwddw2gqd5ljqji0000), [visium-spatial-gene-expression-cornea-bbr9ktnmdfzi6dxm0000](/datasets/md/3e.md#visium-spatial-gene-expression-cornea-bbr9ktnmdfzi6dxm0000), [visium-spatial-gene-expression-cornea-dmkrwi0gtg4jcx7c0000](/datasets/md/c3.md#visium-spatial-gene-expression-cornea-dmkrwi0gtg4jcx7c0000), [visium-spatial-gene-expression-cornea-qfggj00pcsnzosl20000](/datasets/md/bd.md#visium-spatial-gene-expression-cornea-qfggj00pcsnzosl20000), [visium-spatial-gene-expression-cornea-tokvay5ynrd9tiar0000](/datasets/md/1a.md#visium-spatial-gene-expression-cornea-tokvay5ynrd9tiar0000), [visium-spatial-gene-expression-cornea-0hzbyjy8mul9fslc0000](/datasets/md/1e.md#visium-spatial-gene-expression-cornea-0hzbyjy8mul9fslc0000), [visium-spatial-gene-expression-cornea-h5z55ewsruv8yeir0000](/datasets/md/9c.md#visium-spatial-gene-expression-cornea-h5z55ewsruv8yeir0000), [visium-spatial-gene-expression-cornea-zof8awsqd42popvm0000](/datasets/md/5a.md#visium-spatial-gene-expression-cornea-zof8awsqd42popvm0000)

<a id="geo-gse310921"></a>
## Use of Organ Transplant Solution to Preserve Skeletal Muscle for Cellular and Spatial Transcriptomic Analyses

- Page: /collections/geo-gse310921/
- Kind: comparison
- Datasets: 8
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE310921
- Design: Spatial RNA-seq (10X Genomics Visium) of fresh mouse quadriceps muscles from 10-week old male mice that were preserved in organ transplant solution (TS 24hr) for 24 hours and compared to immediately frozen (IF 0hr) controls and autopsy (AT/post mortem) which the mouse carcass was preserved for 48hours prior to freezing (n=2). In addition, spatial RNA-seq of postmortem human pectoralis major muscles preserved in TS 24hr compared to IF 0hr from the same donor (n=1). Donor is an 11 year old female. Data was generated as part of the Pediatric Cell Atlas of Skeletal Muscle Consortium.
- Members: [visium-spatial-gene-expression-skeletal-muscle-tissue-rcmlbezgtxkbgr510000](/datasets/md/01.md#visium-spatial-gene-expression-skeletal-muscle-tissue-rcmlbezgtxkbgr510000), [visium-spatial-gene-expression-skeletal-muscle-tissue-rxbyfat9in1yafyq0000](/datasets/md/71.md#visium-spatial-gene-expression-skeletal-muscle-tissue-rxbyfat9in1yafyq0000), [visium-spatial-gene-expression-skeletal-muscle-tissue-pmorjpfe54yinmre0000](/datasets/md/91.md#visium-spatial-gene-expression-skeletal-muscle-tissue-pmorjpfe54yinmre0000), [visium-spatial-gene-expression-skeletal-muscle-tissue-t93c0sgb1kwhayii0000](/datasets/md/d9.md#visium-spatial-gene-expression-skeletal-muscle-tissue-t93c0sgb1kwhayii0000), [visium-spatial-gene-expression-skeletal-muscle-tissue-68j5d9mmq72cgbpi0000](/datasets/md/fb.md#visium-spatial-gene-expression-skeletal-muscle-tissue-68j5d9mmq72cgbpi0000), [visium-spatial-gene-expression-skeletal-muscle-tissue-c4f9vruzfoghbbdt0000](/datasets/md/a6.md#visium-spatial-gene-expression-skeletal-muscle-tissue-c4f9vruzfoghbbdt0000), [visium-spatial-gene-expression-skeletal-muscle-tissue-m9vgtbni4iy4irkx0000](/datasets/md/2c.md#visium-spatial-gene-expression-skeletal-muscle-tissue-m9vgtbni4iy4irkx0000), [visium-spatial-gene-expression-skeletal-muscle-tissue-ednxoihxi18nyjbs0000](/datasets/md/47.md#visium-spatial-gene-expression-skeletal-muscle-tissue-ednxoihxi18nyjbs0000)

<a id="geo-gse311294"></a>
## Collagen Alignment and Spatial Transcriptomics Analysis (CASTA) reveals gene programs associated with collagen alignmet in colorectal cancer

- Page: /collections/geo-gse311294/
- Kind: other
- Datasets: 5
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE311294
- Design: Five CRC patient samples were collected and Visium v2 spatial transcriptomics was performed. Collagen was imaged in serial sections and spatially-resolved quantification of collagen alignment was integrated with the spatial transcriptomics data.
- Members: [visium-spatial-gene-expression-colon-9q3xbjk09p0dcb5s0000](/datasets/md/4f.md#visium-spatial-gene-expression-colon-9q3xbjk09p0dcb5s0000), [visium-spatial-gene-expression-colon-xomwzx9g1ebukufm0000](/datasets/md/0c.md#visium-spatial-gene-expression-colon-xomwzx9g1ebukufm0000), [visium-spatial-gene-expression-colon-2z4utqeiztryw0yy0000](/datasets/md/ec.md#visium-spatial-gene-expression-colon-2z4utqeiztryw0yy0000), [visium-spatial-gene-expression-colon-rdbwjvddzytelxem0000](/datasets/md/00.md#visium-spatial-gene-expression-colon-rdbwjvddzytelxem0000), [visium-spatial-gene-expression-colon-l4gygkgf3cvwnkn60000](/datasets/md/bb.md#visium-spatial-gene-expression-colon-l4gygkgf3cvwnkn60000)

<a id="geo-gse316390"></a>
## Single Cell and Spatial Transcriptomics Identify Novel Immune-Stromal Interactions in Cardiac Allograft Vasculopathy

- Page: /collections/geo-gse316390/
- Kind: other
- Datasets: 4
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE316390
- Design: Ethical Approval for Human Specimens Acquisition of coronary artery samples for spatial transcriptomics was approved by the Washington University institutional review board (IRB 201104172). Coronary arteries were collected at time of cardiac explant and were fixed in PFA and embedded in paraffin blocks. Blocks were stored at 4°C, covered from light.   Human coronaries were isolated from human heart explants and were categorized as control (no evidence of coronary artery disease), CAD (coronary artery disease), or CAV (evidence of cardiac allograft vasculopathy).  DV200 (percentage of total RNA fragments >200 nucleotides) values for each tissue were calculated and tissues with DV200 values of <15% were excluded from downstream sample preparation. Visium CytAssist Spatial Gene Expression for FFPE protocol was used to prepare Hematoxylin and Eosin (H&E) stained tissue sections for use with Genomics Visium CytAssist Spatial Gene Expression for FFPE assay. In brief, paraffin embedded coronaries were hydrated in ice bath prior to sectioning. 5um slices were sectioned with a clean blade on a microtome and sections were placed on charged microscope slides. Slides were baked for 3 hours at 42°C and were placed in desiccant beads overnight prior to deparaffinization and staining. Tissues were passed through multiple exchanges of xylenes/ethanol for dehydration/rehydration prior to staining with H&E per Visium Spatial Gene Expression for FFPE tissue staining instructions. Capture regions were demarcated, and high-resolution images were obtained with the Zeiss Axioscan Z1 (Washington University Center for Cellular Imaging) prior to submission for barcoding, sequencing and spatial alignment via Space Ranger at The McDonnell Genome Institute.
- Members: [visium-spatial-gene-expression-coronary-artery-rtik0rglqh8tc9ej0001](/datasets/md/4c.md#visium-spatial-gene-expression-coronary-artery-rtik0rglqh8tc9ej0001), [visium-spatial-gene-expression-coronary-artery-jxikizyfg09gtuif0000](/datasets/md/4d.md#visium-spatial-gene-expression-coronary-artery-jxikizyfg09gtuif0000), [visium-spatial-gene-expression-coronary-artery-i94zjanoxydc05yy0000](/datasets/md/a3.md#visium-spatial-gene-expression-coronary-artery-i94zjanoxydc05yy0000), [visium-spatial-gene-expression-coronary-artery-0u8gu78hndposa650000](/datasets/md/f7.md#visium-spatial-gene-expression-coronary-artery-0u8gu78hndposa650000)

<a id="geo-gse327312"></a>
## Spatial transcriptomics of high grade serous ovarian cancers

- Page: /collections/geo-gse327312/
- Kind: replicates
- Datasets: 38
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE327312
- Design: Fresh-frozen, OCT-embedded tissue sections were subjected to spatial transcriptomic profiling using the 10x Genomics Visium assay (6.5 mm × 6.5 mm capture area).  *************************************************************** human/patient privacy ***************************************************************
- Members: [visium-spatial-gene-expression-ovary-yneuh3rgtcmlnsha0000](/datasets/md/26.md#visium-spatial-gene-expression-ovary-yneuh3rgtcmlnsha0000), [visium-spatial-gene-expression-ovary-l3mnbm3p9cduqdtz0000](/datasets/md/ca.md#visium-spatial-gene-expression-ovary-l3mnbm3p9cduqdtz0000), [visium-spatial-gene-expression-ovary-orzs08xjbwjjdqls0001](/datasets/md/e7.md#visium-spatial-gene-expression-ovary-orzs08xjbwjjdqls0001), [visium-spatial-gene-expression-ovary-6rsexszyumrclmez0000](/datasets/md/19.md#visium-spatial-gene-expression-ovary-6rsexszyumrclmez0000), [visium-spatial-gene-expression-ovary-rbzt1lihm0kgbbwv0000](/datasets/md/29.md#visium-spatial-gene-expression-ovary-rbzt1lihm0kgbbwv0000), [visium-spatial-gene-expression-ovary-2q1r5orro6nc9a1q0000](/datasets/md/4f.md#visium-spatial-gene-expression-ovary-2q1r5orro6nc9a1q0000), [visium-spatial-gene-expression-ovary-shdrux8gy9qyzoxh0000](/datasets/md/50.md#visium-spatial-gene-expression-ovary-shdrux8gy9qyzoxh0000), [visium-spatial-gene-expression-ovary-s7qtdvxg9vtthfrz0000](/datasets/md/b2.md#visium-spatial-gene-expression-ovary-s7qtdvxg9vtthfrz0000), [visium-spatial-gene-expression-ovary-b06piivycsl6wzte0000](/datasets/md/41.md#visium-spatial-gene-expression-ovary-b06piivycsl6wzte0000), [visium-spatial-gene-expression-ovary-rxe0dtc5vuwlaxfl0000](/datasets/md/cb.md#visium-spatial-gene-expression-ovary-rxe0dtc5vuwlaxfl0000), [visium-spatial-gene-expression-ovary-quu4e2v9a97dljhu0000](/datasets/md/5b.md#visium-spatial-gene-expression-ovary-quu4e2v9a97dljhu0000), [visium-spatial-gene-expression-ovary-cz6c0t0cwxzyj9in0000](/datasets/md/f3.md#visium-spatial-gene-expression-ovary-cz6c0t0cwxzyj9in0000), [visium-spatial-gene-expression-ovary-axq7tnbvtnkt8ajc0000](/datasets/md/7d.md#visium-spatial-gene-expression-ovary-axq7tnbvtnkt8ajc0000), [visium-spatial-gene-expression-ovary-kdhn9evigkswnwmk0000](/datasets/md/fc.md#visium-spatial-gene-expression-ovary-kdhn9evigkswnwmk0000), [visium-spatial-gene-expression-ovary-trfin0ypqrzxb8jy0000](/datasets/md/fa.md#visium-spatial-gene-expression-ovary-trfin0ypqrzxb8jy0000), [visium-spatial-gene-expression-ovary-g1vxtg1pasx6r3v10000](/datasets/md/ce.md#visium-spatial-gene-expression-ovary-g1vxtg1pasx6r3v10000), [visium-spatial-gene-expression-ovary-en0rirxuprarrn360000](/datasets/md/a0.md#visium-spatial-gene-expression-ovary-en0rirxuprarrn360000), [visium-spatial-gene-expression-ovary-inodqoyfnyxfanyd0000](/datasets/md/a7.md#visium-spatial-gene-expression-ovary-inodqoyfnyxfanyd0000), [visium-spatial-gene-expression-ovary-k7afipdcemle1pz80000](/datasets/md/27.md#visium-spatial-gene-expression-ovary-k7afipdcemle1pz80000), [visium-spatial-gene-expression-ovary-hajza5iixv6g83ih0000](/datasets/md/9d.md#visium-spatial-gene-expression-ovary-hajza5iixv6g83ih0000), [visium-spatial-gene-expression-ovary-0dkt68gdrv8ssffe0000](/datasets/md/c0.md#visium-spatial-gene-expression-ovary-0dkt68gdrv8ssffe0000), [visium-spatial-gene-expression-ovary-qqkuezkyi7mp89wt0000](/datasets/md/d4.md#visium-spatial-gene-expression-ovary-qqkuezkyi7mp89wt0000), [visium-spatial-gene-expression-ovary-nodery7q7up5fydu0000](/datasets/md/d6.md#visium-spatial-gene-expression-ovary-nodery7q7up5fydu0000), [visium-spatial-gene-expression-ovary-e9is99i0vjwu3tpj0000](/datasets/md/be.md#visium-spatial-gene-expression-ovary-e9is99i0vjwu3tpj0000), [visium-spatial-gene-expression-ovary-mckkvekocmmugedm0000](/datasets/md/ac.md#visium-spatial-gene-expression-ovary-mckkvekocmmugedm0000), [visium-spatial-gene-expression-ovary-yka1ksg2nkoiiqum0000](/datasets/md/fe.md#visium-spatial-gene-expression-ovary-yka1ksg2nkoiiqum0000), [visium-spatial-gene-expression-ovary-zisvpj9itofinqws0000](/datasets/md/4e.md#visium-spatial-gene-expression-ovary-zisvpj9itofinqws0000), [visium-spatial-gene-expression-ovary-nq6jhmz1cbm53kcr0000](/datasets/md/93.md#visium-spatial-gene-expression-ovary-nq6jhmz1cbm53kcr0000), [visium-spatial-gene-expression-ovary-bb6vqaefpgcvsogn0000](/datasets/md/d8.md#visium-spatial-gene-expression-ovary-bb6vqaefpgcvsogn0000), [visium-spatial-gene-expression-ovary-nxjhjjsdba08e2rw0000](/datasets/md/b6.md#visium-spatial-gene-expression-ovary-nxjhjjsdba08e2rw0000), [visium-spatial-gene-expression-ovary-p7drgfbrur3o04560000](/datasets/md/0e.md#visium-spatial-gene-expression-ovary-p7drgfbrur3o04560000), [visium-spatial-gene-expression-ovary-wpv2ezal33gtytib0000](/datasets/md/e1.md#visium-spatial-gene-expression-ovary-wpv2ezal33gtytib0000), [visium-spatial-gene-expression-ovary-jy42hyrhn8cifirt0000](/datasets/md/b2.md#visium-spatial-gene-expression-ovary-jy42hyrhn8cifirt0000), [visium-spatial-gene-expression-ovary-ip19dwqot2eroeuj0000](/datasets/md/86.md#visium-spatial-gene-expression-ovary-ip19dwqot2eroeuj0000), [visium-spatial-gene-expression-ovary-it2z40orhyvpwlkf0000](/datasets/md/70.md#visium-spatial-gene-expression-ovary-it2z40orhyvpwlkf0000), [visium-spatial-gene-expression-ovary-cjokeif97oet3vza0000](/datasets/md/f6.md#visium-spatial-gene-expression-ovary-cjokeif97oet3vza0000), [visium-spatial-gene-expression-ovary-yc6nscajrjmhwfig0000](/datasets/md/de.md#visium-spatial-gene-expression-ovary-yc6nscajrjmhwfig0000), [visium-spatial-gene-expression-ovary-nxoru6y0dgwf3kge0000](/datasets/md/23.md#visium-spatial-gene-expression-ovary-nxoru6y0dgwf3kge0000)

<a id="geo-gse318726"></a>
## Phenylalanine Reprograms TLS Maturation and Plasma cell differentiation in MASH-HCC [Spatial Transcriptomics]

- Page: /collections/geo-gse318726/
- Kind: comparison
- Datasets: 7
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE318726
- Design: C3H mice were fed a 60% kcal high-fat diet (HFD; Research Diets, Inc.) for 8 weeks. To induce nonalcoholic steatohepatitis (NASH), mice were then switched to a modified methionine- and choline-deficient (MCD) diet formulated to contain 60% kcal from fat (Research Diets, Inc.). Age- and sex-matched control mice were maintained on a non-NASH control diet. The establishment of the NASH phenotype was confirmed after dietary intervention using standard histological and metabolic assessments prior to tumor inoculation. Following confirmation of NASH, mice in both NASH and control groups were subcutaneously inoculated with the HCA-1 murine hepatocellular carcinoma cell line. Tumor growth was monitored and measured for 4 weeks. At the experimental endpoint, tumors were harvested, snap-frozen in liquid nitrogen, and stored at −80 °C until processing. For RNA extraction, frozen tumor tissues were pulverized using a mortar and pestle under liquid nitrogen. TRIzol reagent was added directly to the homogenized tissue, and total RNA was extracted according to the manufacturer’s protocol. RNA purity was assessed by spectrophotometry (260/280 ratio), and high-quality RNA samples were submitted to Novogene for bulk RNA sequencing.
- Members: [visium-spatial-gene-expression-liver-eva11yqlxnvmzhgz0001](/datasets/md/ee.md#visium-spatial-gene-expression-liver-eva11yqlxnvmzhgz0001), [visium-spatial-gene-expression-liver-yvb71onze6t7ctiu0000](/datasets/md/e0.md#visium-spatial-gene-expression-liver-yvb71onze6t7ctiu0000), [visium-spatial-gene-expression-liver-kbxuz1bm2th5ygwy0000](/datasets/md/9b.md#visium-spatial-gene-expression-liver-kbxuz1bm2th5ygwy0000), [visium-spatial-gene-expression-liver-ptwrhkvos38cnohw0000](/datasets/md/dd.md#visium-spatial-gene-expression-liver-ptwrhkvos38cnohw0000), [visium-spatial-gene-expression-liver-xpvuhibs3v60xtsg0000](/datasets/md/a5.md#visium-spatial-gene-expression-liver-xpvuhibs3v60xtsg0000), [visium-spatial-gene-expression-liver-ysfwiubczaogf0iy0000](/datasets/md/16.md#visium-spatial-gene-expression-liver-ysfwiubczaogf0iy0000), [visium-spatial-gene-expression-liver-ekvqumngobpaxwsl0000](/datasets/md/76.md#visium-spatial-gene-expression-liver-ekvqumngobpaxwsl0000)

<a id="geo-gse332563"></a>
## Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium]

- Page: /collections/geo-gse332563/
- Kind: comparison
- Datasets: 12
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE332563
- Design: Visium Spatial Transcriptomics and Single-Nuclei profiling of human spleens of patients with myelofibrosis
- Members: [visium-spatial-gene-expression-spleen-dcn5ftrztej70ed40001](/datasets/md/14.md#visium-spatial-gene-expression-spleen-dcn5ftrztej70ed40001), [visium-spatial-gene-expression-spleen-kcegxuv6benkg7eu0000](/datasets/md/3c.md#visium-spatial-gene-expression-spleen-kcegxuv6benkg7eu0000), [visium-spatial-gene-expression-spleen-yrmfrlwr8jdc26bi0000](/datasets/md/98.md#visium-spatial-gene-expression-spleen-yrmfrlwr8jdc26bi0000), [visium-spatial-gene-expression-spleen-luwceth3pk5aje2x0000](/datasets/md/65.md#visium-spatial-gene-expression-spleen-luwceth3pk5aje2x0000), [visium-spatial-gene-expression-spleen-munpz32myhq5zydo0000](/datasets/md/3e.md#visium-spatial-gene-expression-spleen-munpz32myhq5zydo0000), [visium-spatial-gene-expression-spleen-uuntxamgedjgcbct0000](/datasets/md/33.md#visium-spatial-gene-expression-spleen-uuntxamgedjgcbct0000), [visium-spatial-gene-expression-spleen-gbbtnwilx7boxmek0000](/datasets/md/2f.md#visium-spatial-gene-expression-spleen-gbbtnwilx7boxmek0000), [visium-spatial-gene-expression-spleen-kegsvl4myankgifo0000](/datasets/md/4e.md#visium-spatial-gene-expression-spleen-kegsvl4myankgifo0000), [visium-spatial-gene-expression-spleen-6ndmv8jtynbj4mx40000](/datasets/md/b9.md#visium-spatial-gene-expression-spleen-6ndmv8jtynbj4mx40000), [visium-spatial-gene-expression-spleen-lx6szqsvlneua1kn0000](/datasets/md/b1.md#visium-spatial-gene-expression-spleen-lx6szqsvlneua1kn0000), [visium-spatial-gene-expression-spleen-zsjnh70rd3gnaeuq0000](/datasets/md/12.md#visium-spatial-gene-expression-spleen-zsjnh70rd3gnaeuq0000), [visium-spatial-gene-expression-spleen-2fnnykxku5yifrmo0000](/datasets/md/90.md#visium-spatial-gene-expression-spleen-2fnnykxku5yifrmo0000)

<a id="geo-gse334067"></a>
## Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis

- Page: /collections/geo-gse334067/
- Kind: other
- Datasets: 32
- Reference: PMID:42521760
- Design: n=5 Muc2hom mice treated with 200mg/kg ENU intraperitoneally at 8 weeks. Colon tissue was collected at 16 weeks. n=3 Muc2het and n=3 Muc2wt mice treated with 200mg/kg ENU intraperitoneally at 8 weeks, followed by 2% DSS treatment at day 10 post-ENU for 5 days. Colon tissue was collected at day 7 (n=1 Muc2wt, n=2 Muc2het) or day 21 post-ENU (n=1 Muc2het, n=2 Muc2wt). n=4 VillinCreERT; Apc+/- mice were treated with treated with 200mg/kg ENU intraperitoneally at 8 weeks, and with 4mg tamoxifen intraperitoneally at day 30 post-ENU. Colon tissue was collected at humane endpoint. n=3 Muc2het and n=3 Muc2hom mice were aged until humane endpoint before colon tissue collection. All whole-mounted colons were fixed with 4% PFA, and 3-5µm thickness tissue sections were cut for spatial transcriptomics with 10X Visium (FFPE).
- Members: [visium-spatial-gene-expression-colon-lwhrjzocogs61ifu0000](/datasets/md/18.md#visium-spatial-gene-expression-colon-lwhrjzocogs61ifu0000), [visium-spatial-gene-expression-colon-6qpipfknlyiwtfoa0000](/datasets/md/ed.md#visium-spatial-gene-expression-colon-6qpipfknlyiwtfoa0000), [visium-spatial-gene-expression-colon-oaegiiussel9fffd0000](/datasets/md/3d.md#visium-spatial-gene-expression-colon-oaegiiussel9fffd0000), [visium-spatial-gene-expression-colon-touwxts0qwvrvegl0000](/datasets/md/a2.md#visium-spatial-gene-expression-colon-touwxts0qwvrvegl0000), [visium-spatial-gene-expression-colon-x6t73hyfgginufza0000](/datasets/md/ee.md#visium-spatial-gene-expression-colon-x6t73hyfgginufza0000), [visium-spatial-gene-expression-colon-e9bdpu7qypm4vaxw0000](/datasets/md/50.md#visium-spatial-gene-expression-colon-e9bdpu7qypm4vaxw0000), [visium-spatial-gene-expression-colon-rxwynkyodqi0bfzh0000](/datasets/md/6c.md#visium-spatial-gene-expression-colon-rxwynkyodqi0bfzh0000), [visium-spatial-gene-expression-colon-zop81kadhqkd9uip0000](/datasets/md/a2.md#visium-spatial-gene-expression-colon-zop81kadhqkd9uip0000), [visium-spatial-gene-expression-colon-2xa3vkukx9ack0uo0000](/datasets/md/2a.md#visium-spatial-gene-expression-colon-2xa3vkukx9ack0uo0000), [visium-spatial-gene-expression-colon-b8vifolidpjmypj00000](/datasets/md/9e.md#visium-spatial-gene-expression-colon-b8vifolidpjmypj00000), [visium-spatial-gene-expression-colon-3z5yrw9hcekvwmbx0000](/datasets/md/1e.md#visium-spatial-gene-expression-colon-3z5yrw9hcekvwmbx0000), [visium-spatial-gene-expression-colon-ipxeww64p8uzebv30000](/datasets/md/55.md#visium-spatial-gene-expression-colon-ipxeww64p8uzebv30000), [visium-spatial-gene-expression-colon-lo7c9wobujow0qvb0000](/datasets/md/ff.md#visium-spatial-gene-expression-colon-lo7c9wobujow0qvb0000), [visium-spatial-gene-expression-colon-vrisq6fa4ogihbdy0000](/datasets/md/11.md#visium-spatial-gene-expression-colon-vrisq6fa4ogihbdy0000), [visium-spatial-gene-expression-colon-0nbqkj07o7y5zgcs0000](/datasets/md/93.md#visium-spatial-gene-expression-colon-0nbqkj07o7y5zgcs0000), [visium-spatial-gene-expression-colon-g0ncidr5tqxfywe10000](/datasets/md/47.md#visium-spatial-gene-expression-colon-g0ncidr5tqxfywe10000), [visium-spatial-gene-expression-colon-bsz0zhgl6ecm9f5j0000](/datasets/md/69.md#visium-spatial-gene-expression-colon-bsz0zhgl6ecm9f5j0000), [visium-spatial-gene-expression-colon-nmiizupnexadlrli0000](/datasets/md/26.md#visium-spatial-gene-expression-colon-nmiizupnexadlrli0000), [visium-spatial-gene-expression-colon-l1upwre92nky8bml0000](/datasets/md/dc.md#visium-spatial-gene-expression-colon-l1upwre92nky8bml0000), [visium-spatial-gene-expression-colon-tely8jhrrvocrnmn0000](/datasets/md/04.md#visium-spatial-gene-expression-colon-tely8jhrrvocrnmn0000), [visium-spatial-gene-expression-colon-wcbbcqiejpqfylrz0000](/datasets/md/b7.md#visium-spatial-gene-expression-colon-wcbbcqiejpqfylrz0000), [visium-spatial-gene-expression-colon-lite3b1ent8vpdab0000](/datasets/md/c1.md#visium-spatial-gene-expression-colon-lite3b1ent8vpdab0000), [visium-spatial-gene-expression-colon-ttl2wswcndn94ieh0000](/datasets/md/68.md#visium-spatial-gene-expression-colon-ttl2wswcndn94ieh0000), [visium-spatial-gene-expression-colon-hwf2zjxhvinqjafo0000](/datasets/md/19.md#visium-spatial-gene-expression-colon-hwf2zjxhvinqjafo0000), [visium-spatial-gene-expression-colon-dhkoccv7pitfvmyn0000](/datasets/md/f9.md#visium-spatial-gene-expression-colon-dhkoccv7pitfvmyn0000), [visium-spatial-gene-expression-colon-eftfhaz0sdnsgi3u0000](/datasets/md/c4.md#visium-spatial-gene-expression-colon-eftfhaz0sdnsgi3u0000), [visium-spatial-gene-expression-colon-hyorf4uipnfl06i30000](/datasets/md/33.md#visium-spatial-gene-expression-colon-hyorf4uipnfl06i30000), [visium-spatial-gene-expression-colon-0iiiz3ihk9nrqjvo0000](/datasets/md/07.md#visium-spatial-gene-expression-colon-0iiiz3ihk9nrqjvo0000), [visium-spatial-gene-expression-colon-2vzbicaetucpfzl10000](/datasets/md/99.md#visium-spatial-gene-expression-colon-2vzbicaetucpfzl10000), [visium-spatial-gene-expression-colon-yeiwgebq42lsc8jo0000](/datasets/md/f3.md#visium-spatial-gene-expression-colon-yeiwgebq42lsc8jo0000), [visium-spatial-gene-expression-colon-e4dpmhm2rdpmlu7x0000](/datasets/md/a1.md#visium-spatial-gene-expression-colon-e4dpmhm2rdpmlu7x0000), [visium-spatial-gene-expression-colon-d9xbyzog5rdecklx0000](/datasets/md/a2.md#visium-spatial-gene-expression-colon-d9xbyzog5rdecklx0000)

<a id="geo-gse335181"></a>
## Spatial transcriptomic analysis of patient- and cell line-derived high grade serous ovarian cancer spheroids

- Page: /collections/geo-gse335181/
- Kind: other
- Datasets: 2
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE335181
- Design: 3 High Grade Serous Ovarian Cancer Cell Lines (HeyA8, OVCAR8 and iOvCa147) were used to generate cell-line derived spheroid samples. Cell lines growing on adherent cell culture plates were transferred on to ultra low attachment plates and incubated for 7 days to allow spheroid formation. Patient-derived high grade serous ovarian cancer spheroids were isolated from ascites fluid obtained from debulking surgery of 3 patients (526, 530, 498). Patient spheroids were prepared by filtering the ascites fluid through a 100 um mesh filter. Both cell line- and patient-derived spheroid samples were washed with PBS, fixed in 10% formalin and embedded into paraffin blocks to generate tissue microarrays (TMA_1-A = cell lines, TMA_2-B = patient samples)
- Members: [visium-spatial-gene-expression-ovary-a6ihs6yzfq5rzh5x0000](/datasets/md/09.md#visium-spatial-gene-expression-ovary-a6ihs6yzfq5rzh5x0000), [visium-spatial-gene-expression-ovary-b4bmy4jzhgwjwflf0000](/datasets/md/98.md#visium-spatial-gene-expression-ovary-b4bmy4jzhgwjwflf0000)

<a id="hest-prostate-st-internal"></a>
## Prostate ST Internal

- Page: /collections/hest-prostate-st-internal/
- Kind: other
- Datasets: 5
- Members: [visium-spatial-gene-expression-prostate-gland-55enpt0voz1abbwq0000](/datasets/md/21.md#visium-spatial-gene-expression-prostate-gland-55enpt0voz1abbwq0000), [visium-spatial-gene-expression-prostate-gland-ajsikvtkyc42obxq0000](/datasets/md/ef.md#visium-spatial-gene-expression-prostate-gland-ajsikvtkyc42obxq0000), [visium-spatial-gene-expression-prostate-gland-qhy8lmqhlbe55c990000](/datasets/md/f6.md#visium-spatial-gene-expression-prostate-gland-qhy8lmqhlbe55c990000), [visium-spatial-gene-expression-prostate-gland-t7r1vlvcoadnfv7a0000](/datasets/md/15.md#visium-spatial-gene-expression-prostate-gland-t7r1vlvcoadnfv7a0000), [visium-spatial-gene-expression-prostate-gland-0qwmcdtwdjnk281q0000](/datasets/md/72.md#visium-spatial-gene-expression-prostate-gland-0qwmcdtwdjnk281q0000)

<a id="geo-gse347797"></a>
## Spatial multi-omics identifies rheumatoid arthritis synovial niches and de-novo laminar histological patterns of fibroblasts subtypes

- Page: /collections/geo-gse347797/
- Kind: comparison
- Datasets: 11
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE347797
- Design: A non-clinical cohort of six RA, three OA and three healthy (NH) synovial samples.
- Members: [visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-wk5wltfkfxmra4gu0000](/datasets/md/b2.md#visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-wk5wltfkfxmra4gu0000), [visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-bssqr8jduquvalfl0001](/datasets/md/9c.md#visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-bssqr8jduquvalfl0001), [visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-vwzgp2fhxkd8ygwc0000](/datasets/md/37.md#visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-vwzgp2fhxkd8ygwc0000), [visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-lbysjhl49eqmt6rn0000](/datasets/md/de.md#visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-lbysjhl49eqmt6rn0000), [visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-gjoivn9lduxyentr0000](/datasets/md/45.md#visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-gjoivn9lduxyentr0000), [visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-rwq8d6qzcyxqrhq20000](/datasets/md/67.md#visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-rwq8d6qzcyxqrhq20000), [visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-fxdduravo3w3z1g20000](/datasets/md/9a.md#visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-fxdduravo3w3z1g20000), [visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-6bx5whjxdkdxhd5g0000](/datasets/md/40.md#visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-6bx5whjxdkdxhd5g0000), [visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-fbqzn60zcbzfyq8f0000](/datasets/md/1f.md#visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-fbqzn60zcbzfyq8f0000), [visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-loqhcvhsgmjw1hy80000](/datasets/md/ab.md#visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-loqhcvhsgmjw1hy80000), [visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-ib2fpxyhc30mv72n0000](/datasets/md/99.md#visium-spatial-gene-expression-synovial-membrane-of-synovial-joint-ib2fpxyhc30mv72n0000)

<a id="geo-gse298314"></a>
## Microglia-astrocyte crosstalk regulates synapse remodeling via Wnt signaling.

- Page: /collections/geo-gse298314/
- Kind: publication
- Datasets: 4
- Reference: 10.1016/j.cell.2025.08.023
- Members: [vizgen-merscope-barrel-cortex-yggbeppcmwvtk6nk0000](/datasets/md/88.md#vizgen-merscope-barrel-cortex-yggbeppcmwvtk6nk0000), [vizgen-merscope-barrel-cortex-ek8lmmkkdoqii6rz0000](/datasets/md/e1.md#vizgen-merscope-barrel-cortex-ek8lmmkkdoqii6rz0000), [vizgen-merscope-barrel-cortex-21ihupjnqtwbzm1s0000](/datasets/md/7a.md#vizgen-merscope-barrel-cortex-21ihupjnqtwbzm1s0000), [vizgen-merscope-barrel-cortex-9pdpsofsyhdrfd0z0000](/datasets/md/2d.md#vizgen-merscope-barrel-cortex-9pdpsofsyhdrfd0z0000)

<a id="bia-s-biad1507"></a>
## The automated computational workflow QUICHE reveals structural definitions of antitumor responses in triple-negative breast cancer.

- Page: /collections/bia-s-biad1507/
- Kind: publication
- Datasets: 534
- Reference: 10.1038/s43018-026-01122-5
- Members: [mibi-tof-breast-fvww7vmctskacmzd0000](/datasets/md/ab.md#mibi-tof-breast-fvww7vmctskacmzd0000), [mibi-tof-breast-valngzes2dtb4smy0000](/datasets/md/02.md#mibi-tof-breast-valngzes2dtb4smy0000), [mibi-tof-breast-j5etsluva1ujfdgi0000](/datasets/md/21.md#mibi-tof-breast-j5etsluva1ujfdgi0000), [mibi-tof-breast-r2diwy9lbwjzibcx0000](/datasets/md/44.md#mibi-tof-breast-r2diwy9lbwjzibcx0000), [mibi-tof-breast-cpm4aztiztzxgwym0000](/datasets/md/56.md#mibi-tof-breast-cpm4aztiztzxgwym0000), [mibi-tof-breast-ipz4x5hf83zibugx0000](/datasets/md/82.md#mibi-tof-breast-ipz4x5hf83zibugx0000), [mibi-tof-breast-loern6bzmquxzkol0000](/datasets/md/e4.md#mibi-tof-breast-loern6bzmquxzkol0000), [mibi-tof-breast-jy64nhrneqbta8cf0000](/datasets/md/6d.md#mibi-tof-breast-jy64nhrneqbta8cf0000), [mibi-tof-breast-6tvfhvocopw12dj20000](/datasets/md/fe.md#mibi-tof-breast-6tvfhvocopw12dj20000), [mibi-tof-breast-rdqvuguipmlxwynf0000](/datasets/md/a4.md#mibi-tof-breast-rdqvuguipmlxwynf0000), [mibi-tof-breast-y5ggozfsbccd811e0000](/datasets/md/30.md#mibi-tof-breast-y5ggozfsbccd811e0000), [mibi-tof-breast-mxu1vpaauculofnt0000](/datasets/md/bc.md#mibi-tof-breast-mxu1vpaauculofnt0000), [mibi-tof-breast-ykgpbrrlrn8a2joz0000](/datasets/md/03.md#mibi-tof-breast-ykgpbrrlrn8a2joz0000), [mibi-tof-breast-yelm7gbg9i7pmn5j0000](/datasets/md/b4.md#mibi-tof-breast-yelm7gbg9i7pmn5j0000), [mibi-tof-breast-w5sgy1z9pafj3o1c0000](/datasets/md/e7.md#mibi-tof-breast-w5sgy1z9pafj3o1c0000), [mibi-tof-breast-4nq1pqdv2et2w0uw0000](/datasets/md/1a.md#mibi-tof-breast-4nq1pqdv2et2w0uw0000), [mibi-tof-breast-dgr71vxsauzudsnv0000](/datasets/md/54.md#mibi-tof-breast-dgr71vxsauzudsnv0000), [mibi-tof-breast-gvxm9bwrp7zykofs0000](/datasets/md/ea.md#mibi-tof-breast-gvxm9bwrp7zykofs0000), [mibi-tof-breast-ajdjqcbcbqggcrnd0000](/datasets/md/86.md#mibi-tof-breast-ajdjqcbcbqggcrnd0000), [mibi-tof-breast-cuvzbvwhpmxrj6up0000](/datasets/md/c3.md#mibi-tof-breast-cuvzbvwhpmxrj6up0000), [mibi-tof-breast-gswj5wq3lwkozowg0000](/datasets/md/f2.md#mibi-tof-breast-gswj5wq3lwkozowg0000), [mibi-tof-breast-3xsjqj0vpxhtct090000](/datasets/md/8f.md#mibi-tof-breast-3xsjqj0vpxhtct090000), [mibi-tof-breast-e6scy2roqjngofjb0000](/datasets/md/3b.md#mibi-tof-breast-e6scy2roqjngofjb0000), [mibi-tof-breast-a9htdpatzcsevdao0000](/datasets/md/6e.md#mibi-tof-breast-a9htdpatzcsevdao0000), [mibi-tof-breast-cemmrq2svhw49saz0000](/datasets/md/17.md#mibi-tof-breast-cemmrq2svhw49saz0000), [mibi-tof-breast-hfhmkuuajmhwxxfj0000](/datasets/md/2d.md#mibi-tof-breast-hfhmkuuajmhwxxfj0000), [mibi-tof-breast-rf5kazccg02g5bax0000](/datasets/md/31.md#mibi-tof-breast-rf5kazccg02g5bax0000), [mibi-tof-breast-8efy1tbs4ci9mb7x0000](/datasets/md/2a.md#mibi-tof-breast-8efy1tbs4ci9mb7x0000), [mibi-tof-breast-awlyvsvajvtu8vaj0000](/datasets/md/50.md#mibi-tof-breast-awlyvsvajvtu8vaj0000), [mibi-tof-breast-pb6uruf6ojb8zw8j0000](/datasets/md/b3.md#mibi-tof-breast-pb6uruf6ojb8zw8j0000), [mibi-tof-breast-o5yqkodps0amx4br0000](/datasets/md/a8.md#mibi-tof-breast-o5yqkodps0amx4br0000), [mibi-tof-breast-vt4hrwxspqqxpzyj0000](/datasets/md/f7.md#mibi-tof-breast-vt4hrwxspqqxpzyj0000), [mibi-tof-breast-mvh7krxkbu5new630000](/datasets/md/6d.md#mibi-tof-breast-mvh7krxkbu5new630000), [mibi-tof-breast-qtm1oc4i72amryus0000](/datasets/md/c3.md#mibi-tof-breast-qtm1oc4i72amryus0000), [mibi-tof-breast-aug74chusreisxml0000](/datasets/md/b5.md#mibi-tof-breast-aug74chusreisxml0000), [mibi-tof-breast-pxxw21jkvdcziadb0000](/datasets/md/e8.md#mibi-tof-breast-pxxw21jkvdcziadb0000), [mibi-tof-breast-mwb3aksfwvvlduls0000](/datasets/md/11.md#mibi-tof-breast-mwb3aksfwvvlduls0000), [mibi-tof-breast-oq2px9jv3jp1cjpu0000](/datasets/md/8b.md#mibi-tof-breast-oq2px9jv3jp1cjpu0000), [mibi-tof-breast-vt8hikzspmlu8y8j0000](/datasets/md/ae.md#mibi-tof-breast-vt8hikzspmlu8y8j0000), [mibi-tof-breast-nkapuyw8lzslpjje0000](/datasets/md/6e.md#mibi-tof-breast-nkapuyw8lzslpjje0000), 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[mibi-tof-breast-ijmibxv0mujiqstk0000](/datasets/md/45.md#mibi-tof-breast-ijmibxv0mujiqstk0000), [mibi-tof-breast-xnjw2gwkuauib8mw0000](/datasets/md/50.md#mibi-tof-breast-xnjw2gwkuauib8mw0000), [mibi-tof-breast-xs21yexgeuuajygy0000](/datasets/md/6e.md#mibi-tof-breast-xs21yexgeuuajygy0000), [mibi-tof-breast-o4qy6rdefhcevqs30000](/datasets/md/13.md#mibi-tof-breast-o4qy6rdefhcevqs30000), [mibi-tof-breast-r3gonkofwxb7nrk00000](/datasets/md/49.md#mibi-tof-breast-r3gonkofwxb7nrk00000), [mibi-tof-breast-tpvlsykcrnq206au0000](/datasets/md/9a.md#mibi-tof-breast-tpvlsykcrnq206au0000), [mibi-tof-breast-wrbbkarvhfigailn0000](/datasets/md/de.md#mibi-tof-breast-wrbbkarvhfigailn0000), [mibi-tof-breast-jmpr1tpyg2tjvqtc0000](/datasets/md/ba.md#mibi-tof-breast-jmpr1tpyg2tjvqtc0000), [mibi-tof-breast-syqqubylzzflkumd0000](/datasets/md/09.md#mibi-tof-breast-syqqubylzzflkumd0000), [mibi-tof-breast-flldvflfk8htpb3i0000](/datasets/md/ae.md#mibi-tof-breast-flldvflfk8htpb3i0000), [mibi-tof-breast-tzwlbfpd11oi5lpf0000](/datasets/md/5c.md#mibi-tof-breast-tzwlbfpd11oi5lpf0000), [mibi-tof-breast-ioobcg4dxoo7yx3e0000](/datasets/md/c7.md#mibi-tof-breast-ioobcg4dxoo7yx3e0000), [mibi-tof-breast-afztocurix9pw9ua0000](/datasets/md/da.md#mibi-tof-breast-afztocurix9pw9ua0000), [mibi-tof-breast-tjfg0hpozcnynnmn0000](/datasets/md/dd.md#mibi-tof-breast-tjfg0hpozcnynnmn0000), [mibi-tof-breast-gmkxknn4lng7md4w0000](/datasets/md/ae.md#mibi-tof-breast-gmkxknn4lng7md4w0000), [mibi-tof-breast-f8j76jnrjkepztcr0000](/datasets/md/f0.md#mibi-tof-breast-f8j76jnrjkepztcr0000), [mibi-tof-breast-zdypfdwfwnau87gv0000](/datasets/md/c0.md#mibi-tof-breast-zdypfdwfwnau87gv0000), [mibi-tof-breast-stkpoudyafisy5ty0000](/datasets/md/bb.md#mibi-tof-breast-stkpoudyafisy5ty0000), [mibi-tof-breast-ijxex4xecrb3jtyi0000](/datasets/md/ae.md#mibi-tof-breast-ijxex4xecrb3jtyi0000), [mibi-tof-breast-nxgyycpbi0n6q3dj0000](/datasets/md/af.md#mibi-tof-breast-nxgyycpbi0n6q3dj0000), [mibi-tof-breast-uzpibivsfjglnvxq0000](/datasets/md/34.md#mibi-tof-breast-uzpibivsfjglnvxq0000), [mibi-tof-breast-rfrtsqlle4vnacqy0000](/datasets/md/dd.md#mibi-tof-breast-rfrtsqlle4vnacqy0000), [mibi-tof-breast-nhzabqnqiw1rbdou0000](/datasets/md/8f.md#mibi-tof-breast-nhzabqnqiw1rbdou0000), [mibi-tof-breast-ecdo25ocvgitkppl0000](/datasets/md/70.md#mibi-tof-breast-ecdo25ocvgitkppl0000), [mibi-tof-breast-ci3qjvygckgbjthq0000](/datasets/md/d2.md#mibi-tof-breast-ci3qjvygckgbjthq0000), [mibi-tof-breast-0grcwxj2j4lhep670000](/datasets/md/1e.md#mibi-tof-breast-0grcwxj2j4lhep670000), [mibi-tof-breast-ahluji45skdiktid0000](/datasets/md/6d.md#mibi-tof-breast-ahluji45skdiktid0000), [mibi-tof-breast-kmmshf9jidfjhews0000](/datasets/md/06.md#mibi-tof-breast-kmmshf9jidfjhews0000), [mibi-tof-breast-u9k1lvxf81zg5yjc0000](/datasets/md/23.md#mibi-tof-breast-u9k1lvxf81zg5yjc0000), [mibi-tof-breast-7c7squrdvywhikfw0000](/datasets/md/37.md#mibi-tof-breast-7c7squrdvywhikfw0000), 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[mibi-tof-breast-sdgqotxzflg0xms40000](/datasets/md/c3.md#mibi-tof-breast-sdgqotxzflg0xms40000), [mibi-tof-breast-qnvpmyj50ndf1wmp0000](/datasets/md/77.md#mibi-tof-breast-qnvpmyj50ndf1wmp0000), [mibi-tof-breast-r8vtvswtehv3mc9h0000](/datasets/md/4b.md#mibi-tof-breast-r8vtvswtehv3mc9h0000), [mibi-tof-breast-kmy4mxdmyrujrrgv0000](/datasets/md/cb.md#mibi-tof-breast-kmy4mxdmyrujrrgv0000), [mibi-tof-breast-0jrctdy3brzsrhxx0000](/datasets/md/9f.md#mibi-tof-breast-0jrctdy3brzsrhxx0000), [mibi-tof-breast-w1dwemfzpddwsx9a0000](/datasets/md/a4.md#mibi-tof-breast-w1dwemfzpddwsx9a0000), [mibi-tof-breast-vwea1kpjiiuwh2iv0000](/datasets/md/2e.md#mibi-tof-breast-vwea1kpjiiuwh2iv0000), [mibi-tof-breast-8xodpey4ambagtbb0000](/datasets/md/20.md#mibi-tof-breast-8xodpey4ambagtbb0000), [mibi-tof-breast-fg5yigrmoqr6x9ty0000](/datasets/md/72.md#mibi-tof-breast-fg5yigrmoqr6x9ty0000), [mibi-tof-breast-pvzozhu6kvrmaqwo0000](/datasets/md/b9.md#mibi-tof-breast-pvzozhu6kvrmaqwo0000), [mibi-tof-breast-07suhavo1h99le3n0000](/datasets/md/75.md#mibi-tof-breast-07suhavo1h99le3n0000), [mibi-tof-breast-fyvs57ff9ft9s7ro0000](/datasets/md/5e.md#mibi-tof-breast-fyvs57ff9ft9s7ro0000), [mibi-tof-breast-atxu2ynd2qigzuyq0000](/datasets/md/33.md#mibi-tof-breast-atxu2ynd2qigzuyq0000), [mibi-tof-breast-ffdxtw6jvctq7irz0000](/datasets/md/29.md#mibi-tof-breast-ffdxtw6jvctq7irz0000), [mibi-tof-breast-gybjgbnczaifp0eh0000](/datasets/md/d0.md#mibi-tof-breast-gybjgbnczaifp0eh0000), [mibi-tof-breast-6hy3zsxyxn4qfykp0000](/datasets/md/23.md#mibi-tof-breast-6hy3zsxyxn4qfykp0000), [mibi-tof-breast-zdado3zmsp4jss3y0000](/datasets/md/44.md#mibi-tof-breast-zdado3zmsp4jss3y0000), [mibi-tof-breast-jyvjdfknkqlaap7q0000](/datasets/md/ce.md#mibi-tof-breast-jyvjdfknkqlaap7q0000), [mibi-tof-breast-lbyfwwywzvdqt1kc0000](/datasets/md/4f.md#mibi-tof-breast-lbyfwwywzvdqt1kc0000), [mibi-tof-breast-nychp9w92ondhbsr0000](/datasets/md/0a.md#mibi-tof-breast-nychp9w92ondhbsr0000), [mibi-tof-breast-dzhijpgxsrx3ftzy0000](/datasets/md/52.md#mibi-tof-breast-dzhijpgxsrx3ftzy0000), [mibi-tof-breast-qseua8jqvbkq6xc80000](/datasets/md/37.md#mibi-tof-breast-qseua8jqvbkq6xc80000), [mibi-tof-breast-ymblqldykz0gqxbi0000](/datasets/md/42.md#mibi-tof-breast-ymblqldykz0gqxbi0000), [mibi-tof-breast-bbaq5tminwftylzd0000](/datasets/md/ec.md#mibi-tof-breast-bbaq5tminwftylzd0000)

<a id="bia-s-biad1288"></a>
## Temporal and spatial composition of the tumor microenvironment predicts response to immune checkpoint inhibition in metastatic TNBC.

- Page: /collections/bia-s-biad1288/
- Kind: publication
- Datasets: 235
- Reference: 10.1038/s43018-026-01114-5
- Members: [mibi-tof-lymph-node-gmram5kxlbybmt3o0000](/datasets/md/30.md#mibi-tof-lymph-node-gmram5kxlbybmt3o0000), [mibi-tof-skin-of-body-ua2zidlal3iirkjh0000](/datasets/md/8e.md#mibi-tof-skin-of-body-ua2zidlal3iirkjh0000), [mibi-tof-lymph-node-uj7r3hoqbd1ibvtn0000](/datasets/md/60.md#mibi-tof-lymph-node-uj7r3hoqbd1ibvtn0000), [mibi-tof-lymph-node-ssrvo6vk8mdmvbkm0000](/datasets/md/7b.md#mibi-tof-lymph-node-ssrvo6vk8mdmvbkm0000), [mibi-tof-lymph-node-s7jdyhhmdvero3nc0000](/datasets/md/7e.md#mibi-tof-lymph-node-s7jdyhhmdvero3nc0000), [mibi-tof-lymph-node-lviv1npb0upavi9w0000](/datasets/md/9e.md#mibi-tof-lymph-node-lviv1npb0upavi9w0000), [mibi-tof-liver-2vccjjzd6hjt2tfh0000](/datasets/md/19.md#mibi-tof-liver-2vccjjzd6hjt2tfh0000), [mibi-tof-breast-ero5shbyjxxmgzr40000](/datasets/md/3c.md#mibi-tof-breast-ero5shbyjxxmgzr40000), [mibi-tof-skin-of-body-3lu8flvqbldcdhla0000](/datasets/md/b6.md#mibi-tof-skin-of-body-3lu8flvqbldcdhla0000), [mibi-tof-liver-l0sgualzxycslqx20000](/datasets/md/20.md#mibi-tof-liver-l0sgualzxycslqx20000), [mibi-tof-lymph-node-b3pmzacppcma2vcf0000](/datasets/md/e8.md#mibi-tof-lymph-node-b3pmzacppcma2vcf0000), [mibi-tof-lymph-node-20buutubozi7gpfk0000](/datasets/md/bf.md#mibi-tof-lymph-node-20buutubozi7gpfk0000), [mibi-tof-unknown-nkms6i7iodqlghnj0000](/datasets/md/1e.md#mibi-tof-unknown-nkms6i7iodqlghnj0000), [mibi-tof-lymph-node-5vdnqlmd10dfc4ge0000](/datasets/md/b7.md#mibi-tof-lymph-node-5vdnqlmd10dfc4ge0000), [mibi-tof-lymph-node-lrgszxetchyiuh5n0000](/datasets/md/fe.md#mibi-tof-lymph-node-lrgszxetchyiuh5n0000), [mibi-tof-breast-res128gnwhditncd0000](/datasets/md/14.md#mibi-tof-breast-res128gnwhditncd0000), [mibi-tof-lymph-node-czlb64g2bdtclysh0000](/datasets/md/32.md#mibi-tof-lymph-node-czlb64g2bdtclysh0000), [mibi-tof-breast-uegu2xfwe9yqfjlz0000](/datasets/md/05.md#mibi-tof-breast-uegu2xfwe9yqfjlz0000), [mibi-tof-breast-focr6b8drhgm1kqe0000](/datasets/md/f9.md#mibi-tof-breast-focr6b8drhgm1kqe0000), [mibi-tof-lymph-node-dn1gf642cnuntnh20000](/datasets/md/a4.md#mibi-tof-lymph-node-dn1gf642cnuntnh20000), [mibi-tof-lymph-node-vyp1c1anht1do4a00000](/datasets/md/80.md#mibi-tof-lymph-node-vyp1c1anht1do4a00000), [mibi-tof-lymph-node-xtbcxpgxz91czynq0000](/datasets/md/35.md#mibi-tof-lymph-node-xtbcxpgxz91czynq0000), [mibi-tof-breast-8zolir69audl3eso0000](/datasets/md/27.md#mibi-tof-breast-8zolir69audl3eso0000), [mibi-tof-liver-hvcjvexznlclfsnb0000](/datasets/md/b3.md#mibi-tof-liver-hvcjvexznlclfsnb0000), [mibi-tof-breast-lbqdcwzrfyolmdsr0000](/datasets/md/c4.md#mibi-tof-breast-lbqdcwzrfyolmdsr0000), [mibi-tof-liver-fiuik9iwk2krrghs0000](/datasets/md/46.md#mibi-tof-liver-fiuik9iwk2krrghs0000), [mibi-tof-breast-cy0klyhkb2tnsfxf0000](/datasets/md/20.md#mibi-tof-breast-cy0klyhkb2tnsfxf0000), [mibi-tof-liver-hcdqfwzipfjpadwl0000](/datasets/md/af.md#mibi-tof-liver-hcdqfwzipfjpadwl0000), [mibi-tof-lymph-node-igtokodjzpjzgkpc0000](/datasets/md/9b.md#mibi-tof-lymph-node-igtokodjzpjzgkpc0000), [mibi-tof-breast-2tqyaar7otzcg1ie0000](/datasets/md/5c.md#mibi-tof-breast-2tqyaar7otzcg1ie0000), [mibi-tof-breast-r7ean6bzayqfycng0000](/datasets/md/ec.md#mibi-tof-breast-r7ean6bzayqfycng0000), [mibi-tof-breast-fdzhiteclpm2ej3a0000](/datasets/md/7d.md#mibi-tof-breast-fdzhiteclpm2ej3a0000), [mibi-tof-lymph-node-bfsmvvwhdioryd0c0000](/datasets/md/57.md#mibi-tof-lymph-node-bfsmvvwhdioryd0c0000), [mibi-tof-lymph-node-3mzjxrrh8tlcckjg0000](/datasets/md/fa.md#mibi-tof-lymph-node-3mzjxrrh8tlcckjg0000), [mibi-tof-lymph-node-ccw5khqvswuhrs0s0000](/datasets/md/c1.md#mibi-tof-lymph-node-ccw5khqvswuhrs0s0000), [mibi-tof-lymph-node-fq4hea3wfazalxas0000](/datasets/md/00.md#mibi-tof-lymph-node-fq4hea3wfazalxas0000), [mibi-tof-breast-qqxb9sctolzqu3yl0000](/datasets/md/17.md#mibi-tof-breast-qqxb9sctolzqu3yl0000), [mibi-tof-breast-tsjhoi8yyq2zy3h10000](/datasets/md/2c.md#mibi-tof-breast-tsjhoi8yyq2zy3h10000), [mibi-tof-breast-ycfrqwe4gz4wzv8f0000](/datasets/md/bc.md#mibi-tof-breast-ycfrqwe4gz4wzv8f0000), [mibi-tof-breast-yrmppd01l8n2nfig0000](/datasets/md/b8.md#mibi-tof-breast-yrmppd01l8n2nfig0000), [mibi-tof-breast-2vhxmgnsgvtxuneh0000](/datasets/md/5b.md#mibi-tof-breast-2vhxmgnsgvtxuneh0000), [mibi-tof-lymph-node-ywgvodvdenckuttc0000](/datasets/md/f9.md#mibi-tof-lymph-node-ywgvodvdenckuttc0000), [mibi-tof-lymph-node-tqqbaqeywhsmno1h0000](/datasets/md/6b.md#mibi-tof-lymph-node-tqqbaqeywhsmno1h0000), [mibi-tof-lung-k0qqpzhitq0i2py40000](/datasets/md/e5.md#mibi-tof-lung-k0qqpzhitq0i2py40000), [mibi-tof-lymph-node-4eags7zins9e6r0o0000](/datasets/md/cc.md#mibi-tof-lymph-node-4eags7zins9e6r0o0000), [mibi-tof-lymph-node-vfqyjkb9curozsst0000](/datasets/md/8b.md#mibi-tof-lymph-node-vfqyjkb9curozsst0000), [mibi-tof-liver-pbbmi6yjdu7jehob0000](/datasets/md/d8.md#mibi-tof-liver-pbbmi6yjdu7jehob0000), [mibi-tof-lymph-node-rbukpyvexwnkzgph0000](/datasets/md/77.md#mibi-tof-lymph-node-rbukpyvexwnkzgph0000), [mibi-tof-breast-pm62xthjhtdxvgpn0000](/datasets/md/ad.md#mibi-tof-breast-pm62xthjhtdxvgpn0000), [mibi-tof-breast-kfvi3w9yknhsbxtv0000](/datasets/md/ef.md#mibi-tof-breast-kfvi3w9yknhsbxtv0000), [mibi-tof-lymph-node-5j4cqogegndhscbc0000](/datasets/md/24.md#mibi-tof-lymph-node-5j4cqogegndhscbc0000), [mibi-tof-breast-zzqdfuyauzzujccz0000](/datasets/md/39.md#mibi-tof-breast-zzqdfuyauzzujccz0000), [mibi-tof-liver-lshtrlypzlfzzjyq0000](/datasets/md/01.md#mibi-tof-liver-lshtrlypzlfzzjyq0000), [mibi-tof-breast-hhtxgpntsp0qsbb30000](/datasets/md/a8.md#mibi-tof-breast-hhtxgpntsp0qsbb30000), [mibi-tof-lymph-node-plbyzqt4u81kcfiq0000](/datasets/md/d8.md#mibi-tof-lymph-node-plbyzqt4u81kcfiq0000), [mibi-tof-unknown-wkh6qcl1ognbxomu0000](/datasets/md/4a.md#mibi-tof-unknown-wkh6qcl1ognbxomu0000), [mibi-tof-lymph-node-xepe6do2dnr7drzk0000](/datasets/md/01.md#mibi-tof-lymph-node-xepe6do2dnr7drzk0000), [mibi-tof-breast-2c6lsu6rblstpso30000](/datasets/md/f6.md#mibi-tof-breast-2c6lsu6rblstpso30000), [mibi-tof-skin-of-body-xe6xfyzz4za3cuec0000](/datasets/md/4c.md#mibi-tof-skin-of-body-xe6xfyzz4za3cuec0000), [mibi-tof-lymph-node-wgyw9g2jgpgfva7c0000](/datasets/md/a9.md#mibi-tof-lymph-node-wgyw9g2jgpgfva7c0000), [mibi-tof-liver-gmbea8nue65grcng0000](/datasets/md/05.md#mibi-tof-liver-gmbea8nue65grcng0000), [mibi-tof-liver-8qc97sruggvamb7k0000](/datasets/md/bd.md#mibi-tof-liver-8qc97sruggvamb7k0000), [mibi-tof-breast-aikvbhktvafj9cln0000](/datasets/md/a0.md#mibi-tof-breast-aikvbhktvafj9cln0000), [mibi-tof-breast-ehsytw5hqksemd8n0000](/datasets/md/ce.md#mibi-tof-breast-ehsytw5hqksemd8n0000), [mibi-tof-skin-of-body-jzphrn3gko07ijxo0000](/datasets/md/e4.md#mibi-tof-skin-of-body-jzphrn3gko07ijxo0000), [mibi-tof-lymph-node-xfvcnyhi18z5xeof0000](/datasets/md/e4.md#mibi-tof-lymph-node-xfvcnyhi18z5xeof0000), [mibi-tof-lymph-node-7lxehrk8cimlyn880000](/datasets/md/ae.md#mibi-tof-lymph-node-7lxehrk8cimlyn880000), [mibi-tof-lymph-node-luox4wo1ud47vl1s0000](/datasets/md/5a.md#mibi-tof-lymph-node-luox4wo1ud47vl1s0000), [mibi-tof-lymph-node-rfnvqwfrw83vfc5r0000](/datasets/md/7c.md#mibi-tof-lymph-node-rfnvqwfrw83vfc5r0000), [mibi-tof-breast-aljwfaooctorjbwn0000](/datasets/md/4b.md#mibi-tof-breast-aljwfaooctorjbwn0000), [mibi-tof-lymph-node-9zmjxiu9olm2jnj60000](/datasets/md/1f.md#mibi-tof-lymph-node-9zmjxiu9olm2jnj60000), [mibi-tof-lymph-node-ldmsacvrgxafdfcq0000](/datasets/md/a7.md#mibi-tof-lymph-node-ldmsacvrgxafdfcq0000), [mibi-tof-breast-7uptdl1jy4hbmp1g0000](/datasets/md/ec.md#mibi-tof-breast-7uptdl1jy4hbmp1g0000), [mibi-tof-breast-g55wiabz6krbwfok0000](/datasets/md/ff.md#mibi-tof-breast-g55wiabz6krbwfok0000), [mibi-tof-lymph-node-bmbexuarkwjzzsgn0000](/datasets/md/57.md#mibi-tof-lymph-node-bmbexuarkwjzzsgn0000), [mibi-tof-skin-of-body-inn63kztvx0okkgh0000](/datasets/md/a4.md#mibi-tof-skin-of-body-inn63kztvx0okkgh0000), [mibi-tof-breast-iqrg9rqcukmtaosf0000](/datasets/md/48.md#mibi-tof-breast-iqrg9rqcukmtaosf0000), [mibi-tof-unknown-18hmb1dukpqlm8lz0000](/datasets/md/b9.md#mibi-tof-unknown-18hmb1dukpqlm8lz0000), [mibi-tof-lymph-node-s8tuhxf1dv5zosng0000](/datasets/md/18.md#mibi-tof-lymph-node-s8tuhxf1dv5zosng0000), [mibi-tof-skin-of-body-wjcqv4xamtj1szco0000](/datasets/md/56.md#mibi-tof-skin-of-body-wjcqv4xamtj1szco0000), [mibi-tof-skin-of-body-9ubbmd995bp6nkjb0000](/datasets/md/3d.md#mibi-tof-skin-of-body-9ubbmd995bp6nkjb0000), [mibi-tof-breast-xuw7qfvbwxhiz8nr0000](/datasets/md/fa.md#mibi-tof-breast-xuw7qfvbwxhiz8nr0000), [mibi-tof-lymph-node-zfqelzqvdwztkofa0000](/datasets/md/12.md#mibi-tof-lymph-node-zfqelzqvdwztkofa0000), [mibi-tof-breast-ospynuig6bfwzagp0000](/datasets/md/60.md#mibi-tof-breast-ospynuig6bfwzagp0000), [mibi-tof-breast-lypkwotfr9kcj2yt0000](/datasets/md/70.md#mibi-tof-breast-lypkwotfr9kcj2yt0000), [mibi-tof-lymph-node-2lpuzk5nxaxnek7t0000](/datasets/md/de.md#mibi-tof-lymph-node-2lpuzk5nxaxnek7t0000), [mibi-tof-liver-dwi8qyvet1ihqwux0000](/datasets/md/d0.md#mibi-tof-liver-dwi8qyvet1ihqwux0000), [mibi-tof-breast-vyqomeeye0m68jcu0000](/datasets/md/86.md#mibi-tof-breast-vyqomeeye0m68jcu0000), [mibi-tof-breast-kbrwzwa85wyqxr1t0000](/datasets/md/9d.md#mibi-tof-breast-kbrwzwa85wyqxr1t0000), [mibi-tof-lymph-node-fux0rpttxl4mjkbr0000](/datasets/md/17.md#mibi-tof-lymph-node-fux0rpttxl4mjkbr0000), [mibi-tof-lymph-node-8sfif11nsv89m5us0000](/datasets/md/4c.md#mibi-tof-lymph-node-8sfif11nsv89m5us0000), [mibi-tof-liver-9fv3efteqgd7ry1i0000](/datasets/md/c7.md#mibi-tof-liver-9fv3efteqgd7ry1i0000), [mibi-tof-unknown-ispuzzlicpecq29u0000](/datasets/md/8a.md#mibi-tof-unknown-ispuzzlicpecq29u0000), 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[mibi-tof-breast-fd8jiuemrssrelcq0000](/datasets/md/71.md#mibi-tof-breast-fd8jiuemrssrelcq0000), [mibi-tof-lymph-node-wpmv9oy34gappfmh0000](/datasets/md/3c.md#mibi-tof-lymph-node-wpmv9oy34gappfmh0000), [mibi-tof-lymph-node-00gd4kirqp33hrd40000](/datasets/md/0c.md#mibi-tof-lymph-node-00gd4kirqp33hrd40000), [mibi-tof-breast-immyfndt7wvcksg20000](/datasets/md/c8.md#mibi-tof-breast-immyfndt7wvcksg20000), [mibi-tof-skin-of-body-fzowxvmcp0satrpe0000](/datasets/md/3f.md#mibi-tof-skin-of-body-fzowxvmcp0satrpe0000), [mibi-tof-lung-tzmw10tc3qrnwhqn0000](/datasets/md/65.md#mibi-tof-lung-tzmw10tc3qrnwhqn0000), [mibi-tof-breast-1mkc6htuddsefprx0000](/datasets/md/5e.md#mibi-tof-breast-1mkc6htuddsefprx0000), [mibi-tof-breast-d1t8itn84n3cpilh0000](/datasets/md/7c.md#mibi-tof-breast-d1t8itn84n3cpilh0000), [mibi-tof-breast-teetbivzou56ohrv0000](/datasets/md/d6.md#mibi-tof-breast-teetbivzou56ohrv0000), [mibi-tof-breast-q9a60tubg1owthvc0000](/datasets/md/e8.md#mibi-tof-breast-q9a60tubg1owthvc0000), [mibi-tof-lymph-node-mexi1keaiobg0clj0000](/datasets/md/84.md#mibi-tof-lymph-node-mexi1keaiobg0clj0000), [mibi-tof-breast-gvgvtyeoaatkd8h20000](/datasets/md/56.md#mibi-tof-breast-gvgvtyeoaatkd8h20000), [mibi-tof-lung-5tnetsbubrvxvpth0000](/datasets/md/90.md#mibi-tof-lung-5tnetsbubrvxvpth0000), [mibi-tof-breast-q9lmzgebfwyyo4cz0000](/datasets/md/31.md#mibi-tof-breast-q9lmzgebfwyyo4cz0000), [mibi-tof-breast-zgx9n2790p0pzejy0000](/datasets/md/65.md#mibi-tof-breast-zgx9n2790p0pzejy0000), [mibi-tof-breast-yrkdvcilm880prat0000](/datasets/md/12.md#mibi-tof-breast-yrkdvcilm880prat0000), [mibi-tof-skin-of-body-f3i5xux2ey6gupmr0000](/datasets/md/7b.md#mibi-tof-skin-of-body-f3i5xux2ey6gupmr0000), [mibi-tof-lung-rwan4syfbmb1odum0000](/datasets/md/ef.md#mibi-tof-lung-rwan4syfbmb1odum0000), [mibi-tof-lymph-node-nhtfysysr1hjzqs80000](/datasets/md/e3.md#mibi-tof-lymph-node-nhtfysysr1hjzqs80000), [mibi-tof-unknown-li35k1rgk77gpkg60000](/datasets/md/6d.md#mibi-tof-unknown-li35k1rgk77gpkg60000), [mibi-tof-lymph-node-srupsl2dr9t5hh0t0000](/datasets/md/3a.md#mibi-tof-lymph-node-srupsl2dr9t5hh0t0000), [mibi-tof-breast-2z7zgklydiqh9bzq0000](/datasets/md/81.md#mibi-tof-breast-2z7zgklydiqh9bzq0000), [mibi-tof-lymph-node-vcrn1cq8xd1vohab0000](/datasets/md/23.md#mibi-tof-lymph-node-vcrn1cq8xd1vohab0000), [mibi-tof-skin-of-body-zxotawihubc7vwrd0000](/datasets/md/7a.md#mibi-tof-skin-of-body-zxotawihubc7vwrd0000), [mibi-tof-lymph-node-d0olmn6ytfe3jwmo0000](/datasets/md/24.md#mibi-tof-lymph-node-d0olmn6ytfe3jwmo0000), [mibi-tof-skin-of-body-kjt9mtk01gef4ho10000](/datasets/md/f8.md#mibi-tof-skin-of-body-kjt9mtk01gef4ho10000), [mibi-tof-breast-1rwfokao9vyvdoqu0000](/datasets/md/40.md#mibi-tof-breast-1rwfokao9vyvdoqu0000), [mibi-tof-breast-ti6a5fckhei5amuf0000](/datasets/md/08.md#mibi-tof-breast-ti6a5fckhei5amuf0000), [mibi-tof-breast-xjw2frhtlpznnuev0000](/datasets/md/80.md#mibi-tof-breast-xjw2frhtlpznnuev0000), [mibi-tof-breast-jtwe7wcfjr4gzcec0000](/datasets/md/ea.md#mibi-tof-breast-jtwe7wcfjr4gzcec0000)