# SpatialData-DB collections, shard a

Generated from catalog release catalog-2026-11-01. Each collection has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="10x-mouse-bone-data-with-custom-add-on-panel-1-standard"></a>
## 10x-mouse-bone-data-with-custom-add-on-panel-1-standard

- Page: /collections/10x-mouse-bone-data-with-custom-add-on-panel-1-standard/
- Kind: other
- Datasets: 3
- Members: [10x-xenium-bone-tissue-1lywtr2drrkm6nty0001](/datasets/md/59.md#10x-xenium-bone-tissue-1lywtr2drrkm6nty0001), [10x-xenium-bone-tissue-ftcwfwqbdwnk5emp0001](/datasets/md/f6.md#10x-xenium-bone-tissue-ftcwfwqbdwnk5emp0001), [10x-xenium-bone-tissue-6t1ales2sndpl1bq0001](/datasets/md/33.md#10x-xenium-bone-tissue-6t1ales2sndpl1bq0001)

<a id="10x-human-liver-data-xenium-human-multi-tissue-and-cancer-panel-1-standard"></a>
## 10x-human-liver-data-xenium-human-multi-tissue-and-cancer-panel-1-standard

- Page: /collections/10x-human-liver-data-xenium-human-multi-tissue-and-cancer-panel-1-standard/
- Kind: other
- Datasets: 2
- Members: [10x-xenium-liver-jr5kktkjk1kgewod0001](/datasets/md/61.md#10x-xenium-liver-jr5kktkjk1kgewod0001), [10x-xenium-liver-45cpadgbxj4llwjl0001](/datasets/md/e3.md#10x-xenium-liver-45cpadgbxj4llwjl0001)

<a id="doi-10-1038-s41467-022-33069-3"></a>
## Spatio-temporal analysis of prostate tumors in situ suggests pre-existence of treatment-resistant clones.

- Page: /collections/doi-10-1038-s41467-022-33069-3/
- Kind: comparison
- Datasets: 24
- Reference: 10.1038/s41467-022-33069-3
- Members: [spatial-transcriptomics-prostate-gland-bq8adhdog5bzn2ke0000](/datasets/md/6a.md#spatial-transcriptomics-prostate-gland-bq8adhdog5bzn2ke0000), [spatial-transcriptomics-prostate-gland-j44oeqwwnp0u8pnj0000](/datasets/md/58.md#spatial-transcriptomics-prostate-gland-j44oeqwwnp0u8pnj0000), [spatial-transcriptomics-prostate-gland-yvtdre2kkh0igaov0000](/datasets/md/0c.md#spatial-transcriptomics-prostate-gland-yvtdre2kkh0igaov0000), [spatial-transcriptomics-prostate-gland-syvgrzl16omnlqch0000](/datasets/md/af.md#spatial-transcriptomics-prostate-gland-syvgrzl16omnlqch0000), [spatial-transcriptomics-prostate-gland-lh4hlx4xidvvp8aw0000](/datasets/md/23.md#spatial-transcriptomics-prostate-gland-lh4hlx4xidvvp8aw0000), [spatial-transcriptomics-prostate-gland-egsm7qm6x9mnbsv50000](/datasets/md/50.md#spatial-transcriptomics-prostate-gland-egsm7qm6x9mnbsv50000), [spatial-transcriptomics-prostate-gland-qjw39edovjbxue1m0000](/datasets/md/50.md#spatial-transcriptomics-prostate-gland-qjw39edovjbxue1m0000), [spatial-transcriptomics-prostate-gland-s4n54snnrfrcuhd70000](/datasets/md/91.md#spatial-transcriptomics-prostate-gland-s4n54snnrfrcuhd70000), [spatial-transcriptomics-prostate-gland-46aw0fhqdvgi203b0000](/datasets/md/36.md#spatial-transcriptomics-prostate-gland-46aw0fhqdvgi203b0000), [spatial-transcriptomics-prostate-gland-yylwmxosjwoueoli0000](/datasets/md/7b.md#spatial-transcriptomics-prostate-gland-yylwmxosjwoueoli0000), [spatial-transcriptomics-prostate-gland-hruk744waw9kss220000](/datasets/md/ea.md#spatial-transcriptomics-prostate-gland-hruk744waw9kss220000), [spatial-transcriptomics-prostate-gland-urthurdh5t3prup20000](/datasets/md/ea.md#spatial-transcriptomics-prostate-gland-urthurdh5t3prup20000), [spatial-transcriptomics-prostate-gland-tgktdw92hxklvt8u0000](/datasets/md/01.md#spatial-transcriptomics-prostate-gland-tgktdw92hxklvt8u0000), [spatial-transcriptomics-prostate-gland-iili8yklfupzgm1q0000](/datasets/md/f7.md#spatial-transcriptomics-prostate-gland-iili8yklfupzgm1q0000), [spatial-transcriptomics-prostate-gland-1kcvp2rxcorgawvh0000](/datasets/md/73.md#spatial-transcriptomics-prostate-gland-1kcvp2rxcorgawvh0000), [spatial-transcriptomics-prostate-gland-vqsjub2yfdt2qdz80000](/datasets/md/74.md#spatial-transcriptomics-prostate-gland-vqsjub2yfdt2qdz80000), [spatial-transcriptomics-prostate-gland-3kmun7vvevz27ll10000](/datasets/md/af.md#spatial-transcriptomics-prostate-gland-3kmun7vvevz27ll10000), [spatial-transcriptomics-prostate-gland-gojqqrewtubjuxoe0000](/datasets/md/45.md#spatial-transcriptomics-prostate-gland-gojqqrewtubjuxoe0000), [spatial-transcriptomics-prostate-gland-3dwahvtdc4vickks0000](/datasets/md/3c.md#spatial-transcriptomics-prostate-gland-3dwahvtdc4vickks0000), [spatial-transcriptomics-prostate-gland-cpileetwtre18cao0000](/datasets/md/b6.md#spatial-transcriptomics-prostate-gland-cpileetwtre18cao0000), [spatial-transcriptomics-prostate-gland-ynpef8dzoojurzlm0000](/datasets/md/72.md#spatial-transcriptomics-prostate-gland-ynpef8dzoojurzlm0000), [spatial-transcriptomics-prostate-gland-vca5myx80o6k9gxx0000](/datasets/md/e1.md#spatial-transcriptomics-prostate-gland-vca5myx80o6k9gxx0000), [spatial-transcriptomics-prostate-gland-zemxiei7crbnttoy0000](/datasets/md/36.md#spatial-transcriptomics-prostate-gland-zemxiei7crbnttoy0000), [spatial-transcriptomics-prostate-gland-ols63k8pgdrxshhu0000](/datasets/md/21.md#spatial-transcriptomics-prostate-gland-ols63k8pgdrxshhu0000)

<a id="doi-10-1038-s41586-022-05385-7"></a>
## The neurons that restore walking after paralysis.

- Page: /collections/doi-10-1038-s41586-022-05385-7/
- Kind: publication
- Datasets: 16
- Reference: 10.1038/s41586-022-05385-7
- Members: [visium-spatial-gene-expression-spinal-cord-hntcvamxjzrwnuyd0000](/datasets/md/60.md#visium-spatial-gene-expression-spinal-cord-hntcvamxjzrwnuyd0000), [visium-spatial-gene-expression-spinal-cord-hvqmlkknlwxhqxot0000](/datasets/md/3c.md#visium-spatial-gene-expression-spinal-cord-hvqmlkknlwxhqxot0000), [visium-spatial-gene-expression-spinal-cord-fbxv2c1ghrecxwkt0000](/datasets/md/f9.md#visium-spatial-gene-expression-spinal-cord-fbxv2c1ghrecxwkt0000), [visium-spatial-gene-expression-spinal-cord-wyqxi2gamzb4xmba0000](/datasets/md/fd.md#visium-spatial-gene-expression-spinal-cord-wyqxi2gamzb4xmba0000), [visium-spatial-gene-expression-spinal-cord-dmdgkakzckskv0ym0000](/datasets/md/84.md#visium-spatial-gene-expression-spinal-cord-dmdgkakzckskv0ym0000), [visium-spatial-gene-expression-spinal-cord-lkwelwhk99binksa0000](/datasets/md/21.md#visium-spatial-gene-expression-spinal-cord-lkwelwhk99binksa0000), [visium-spatial-gene-expression-spinal-cord-75bz6qs3sqkpyqch0000](/datasets/md/a7.md#visium-spatial-gene-expression-spinal-cord-75bz6qs3sqkpyqch0000), [visium-spatial-gene-expression-spinal-cord-ns3lqmct0dtdje4s0000](/datasets/md/d9.md#visium-spatial-gene-expression-spinal-cord-ns3lqmct0dtdje4s0000), [visium-spatial-gene-expression-spinal-cord-gqx0skui2rz99ifg0000](/datasets/md/f1.md#visium-spatial-gene-expression-spinal-cord-gqx0skui2rz99ifg0000), [visium-spatial-gene-expression-spinal-cord-2m7ladiulurg6lu50000](/datasets/md/f5.md#visium-spatial-gene-expression-spinal-cord-2m7ladiulurg6lu50000), [visium-spatial-gene-expression-spinal-cord-nsksztgggllu3qbz0000](/datasets/md/98.md#visium-spatial-gene-expression-spinal-cord-nsksztgggllu3qbz0000), [visium-spatial-gene-expression-spinal-cord-z87lv7l10knrkseo0000](/datasets/md/80.md#visium-spatial-gene-expression-spinal-cord-z87lv7l10knrkseo0000), [visium-spatial-gene-expression-spinal-cord-2mmod7amczyvivcy0000](/datasets/md/35.md#visium-spatial-gene-expression-spinal-cord-2mmod7amczyvivcy0000), [visium-spatial-gene-expression-spinal-cord-0jswv3i4iuhei33f0000](/datasets/md/09.md#visium-spatial-gene-expression-spinal-cord-0jswv3i4iuhei33f0000), [visium-spatial-gene-expression-spinal-cord-sq28flesgydow9tv0000](/datasets/md/7b.md#visium-spatial-gene-expression-spinal-cord-sq28flesgydow9tv0000), [visium-spatial-gene-expression-spinal-cord-1pjgmrzgza3rmvpk0000](/datasets/md/dc.md#visium-spatial-gene-expression-spinal-cord-1pjgmrzgza3rmvpk0000)

<a id="doi-10-1038-s41587-021-01075-3"></a>
## Super-resolved spatial transcriptomics by deep data fusion.

- Page: /collections/doi-10-1038-s41587-021-01075-3/
- Kind: publication
- Datasets: 4
- Reference: 10.1038/s41587-021-01075-3
- Members: [visium-spatial-gene-expression-intestine-lqqnj4kh0yfnuker0000](/datasets/md/88.md#visium-spatial-gene-expression-intestine-lqqnj4kh0yfnuker0000), [visium-spatial-gene-expression-intestine-miplzmo5bnpmicp30000](/datasets/md/9a.md#visium-spatial-gene-expression-intestine-miplzmo5bnpmicp30000), [visium-spatial-gene-expression-intestine-cspbyce4r0a0ffdo0000](/datasets/md/20.md#visium-spatial-gene-expression-intestine-cspbyce4r0a0ffdo0000), [visium-spatial-gene-expression-intestine-qsofc56uf14lpp4x0000](/datasets/md/89.md#visium-spatial-gene-expression-intestine-qsofc56uf14lpp4x0000)

<a id="doi-10-1126-sciadv-abb3446"></a>
## Molecular atlas of the adult mouse brain.

- Page: /collections/doi-10-1126-sciadv-abb3446/
- Kind: publication
- Datasets: 75
- Reference: 10.1126/sciadv.abb3446
- Members: [spatial-transcriptomics-brain-yr7eendix0tx2exs0001](/datasets/md/d0.md#spatial-transcriptomics-brain-yr7eendix0tx2exs0001), [spatial-transcriptomics-brain-fghukrivdmo9xbil0000](/datasets/md/ed.md#spatial-transcriptomics-brain-fghukrivdmo9xbil0000), [spatial-transcriptomics-brain-epophqta5zkmixqa0000](/datasets/md/3b.md#spatial-transcriptomics-brain-epophqta5zkmixqa0000), [spatial-transcriptomics-brain-rnorcmujsmjoi8ba0002](/datasets/md/5d.md#spatial-transcriptomics-brain-rnorcmujsmjoi8ba0002), [spatial-transcriptomics-brain-di6gkgbhgo64ui7c0000](/datasets/md/76.md#spatial-transcriptomics-brain-di6gkgbhgo64ui7c0000), [spatial-transcriptomics-brain-sqe9vul4ca7wldda0000](/datasets/md/09.md#spatial-transcriptomics-brain-sqe9vul4ca7wldda0000), [spatial-transcriptomics-brain-p2lvzbx7jmeofaif0000](/datasets/md/45.md#spatial-transcriptomics-brain-p2lvzbx7jmeofaif0000), [spatial-transcriptomics-brain-06kidxb6jkucoklr0001](/datasets/md/89.md#spatial-transcriptomics-brain-06kidxb6jkucoklr0001), [spatial-transcriptomics-brain-k6dwxhaln8iwadfi0000](/datasets/md/b4.md#spatial-transcriptomics-brain-k6dwxhaln8iwadfi0000), [spatial-transcriptomics-brain-kebzpefhj4jghmfs0000](/datasets/md/ff.md#spatial-transcriptomics-brain-kebzpefhj4jghmfs0000), [spatial-transcriptomics-brain-qa6bvamj8hswojxm0000](/datasets/md/9a.md#spatial-transcriptomics-brain-qa6bvamj8hswojxm0000), [spatial-transcriptomics-brain-0y02uaww1cympa1p0000](/datasets/md/9e.md#spatial-transcriptomics-brain-0y02uaww1cympa1p0000), [spatial-transcriptomics-brain-oowqyg0p32g5jog20000](/datasets/md/1e.md#spatial-transcriptomics-brain-oowqyg0p32g5jog20000), [spatial-transcriptomics-brain-vqv8e91gzeiqp0ke0000](/datasets/md/3d.md#spatial-transcriptomics-brain-vqv8e91gzeiqp0ke0000), [spatial-transcriptomics-brain-zpn8oosiw3iyhjif0000](/datasets/md/9c.md#spatial-transcriptomics-brain-zpn8oosiw3iyhjif0000), [spatial-transcriptomics-brain-ec6guzff6zp76dpm0000](/datasets/md/77.md#spatial-transcriptomics-brain-ec6guzff6zp76dpm0000), [spatial-transcriptomics-brain-du2fgsgdcxurm1gx0000](/datasets/md/74.md#spatial-transcriptomics-brain-du2fgsgdcxurm1gx0000), [spatial-transcriptomics-brain-n0sm1bxabm8ditiz0000](/datasets/md/96.md#spatial-transcriptomics-brain-n0sm1bxabm8ditiz0000), [spatial-transcriptomics-brain-ggiabvnbeblit50e0000](/datasets/md/e0.md#spatial-transcriptomics-brain-ggiabvnbeblit50e0000), [spatial-transcriptomics-brain-e4jwupsfizkmuqqw0000](/datasets/md/4c.md#spatial-transcriptomics-brain-e4jwupsfizkmuqqw0000), [spatial-transcriptomics-brain-q2we19b2lxucwmut0002](/datasets/md/c3.md#spatial-transcriptomics-brain-q2we19b2lxucwmut0002), [spatial-transcriptomics-brain-mmalwk5bnwzhsn9x0000](/datasets/md/77.md#spatial-transcriptomics-brain-mmalwk5bnwzhsn9x0000), [spatial-transcriptomics-brain-t8r3tytt9b1gltum0000](/datasets/md/4a.md#spatial-transcriptomics-brain-t8r3tytt9b1gltum0000), [spatial-transcriptomics-brain-anmfk81tjrhpzgkp0000](/datasets/md/b3.md#spatial-transcriptomics-brain-anmfk81tjrhpzgkp0000), [spatial-transcriptomics-brain-k9rtgn3a0rr8wlhu0000](/datasets/md/75.md#spatial-transcriptomics-brain-k9rtgn3a0rr8wlhu0000), [spatial-transcriptomics-brain-x5lqlbsospi9bmzz0001](/datasets/md/3d.md#spatial-transcriptomics-brain-x5lqlbsospi9bmzz0001), [spatial-transcriptomics-brain-frhofjarwdp7g9v40000](/datasets/md/d4.md#spatial-transcriptomics-brain-frhofjarwdp7g9v40000), [spatial-transcriptomics-brain-m62xpbegfbgoprg60001](/datasets/md/59.md#spatial-transcriptomics-brain-m62xpbegfbgoprg60001), [spatial-transcriptomics-brain-zg7dg5ed7kf67ol70000](/datasets/md/fd.md#spatial-transcriptomics-brain-zg7dg5ed7kf67ol70000), [spatial-transcriptomics-brain-trrkapehwpj6jofb0000](/datasets/md/4f.md#spatial-transcriptomics-brain-trrkapehwpj6jofb0000), [spatial-transcriptomics-brain-x5knld66w8610fo80000](/datasets/md/ce.md#spatial-transcriptomics-brain-x5knld66w8610fo80000), [spatial-transcriptomics-brain-ggpxa3spg3hnm7bd0000](/datasets/md/f7.md#spatial-transcriptomics-brain-ggpxa3spg3hnm7bd0000), [spatial-transcriptomics-brain-zczzxu1vxuo5dclz0000](/datasets/md/40.md#spatial-transcriptomics-brain-zczzxu1vxuo5dclz0000), [spatial-transcriptomics-brain-runvrplcd6jvewpf0000](/datasets/md/f6.md#spatial-transcriptomics-brain-runvrplcd6jvewpf0000), [spatial-transcriptomics-brain-9bpnmzv2hgevbgse0000](/datasets/md/8d.md#spatial-transcriptomics-brain-9bpnmzv2hgevbgse0000), [spatial-transcriptomics-brain-dz0ah4jt09icxekt0000](/datasets/md/a4.md#spatial-transcriptomics-brain-dz0ah4jt09icxekt0000), [spatial-transcriptomics-brain-u54r74redklbfo490000](/datasets/md/b2.md#spatial-transcriptomics-brain-u54r74redklbfo490000), [spatial-transcriptomics-brain-i2tfie7inawb5do30000](/datasets/md/a0.md#spatial-transcriptomics-brain-i2tfie7inawb5do30000), [spatial-transcriptomics-brain-kcfn8p3ecyrtq2t70000](/datasets/md/96.md#spatial-transcriptomics-brain-kcfn8p3ecyrtq2t70000), [spatial-transcriptomics-brain-yuqewiqhiok1fpeg0000](/datasets/md/75.md#spatial-transcriptomics-brain-yuqewiqhiok1fpeg0000), [spatial-transcriptomics-brain-cbvanwex1qtwgn7c0000](/datasets/md/80.md#spatial-transcriptomics-brain-cbvanwex1qtwgn7c0000), [spatial-transcriptomics-brain-cefoxlimrxg3uf3x0000](/datasets/md/61.md#spatial-transcriptomics-brain-cefoxlimrxg3uf3x0000), [spatial-transcriptomics-brain-crgateijth9d6dvq0000](/datasets/md/31.md#spatial-transcriptomics-brain-crgateijth9d6dvq0000), [spatial-transcriptomics-brain-k29xuma4ykn5sd4z0000](/datasets/md/c5.md#spatial-transcriptomics-brain-k29xuma4ykn5sd4z0000), [spatial-transcriptomics-brain-2dfb4uffclzgydj30000](/datasets/md/2a.md#spatial-transcriptomics-brain-2dfb4uffclzgydj30000), [spatial-transcriptomics-brain-msucqumok2idbsqs0000](/datasets/md/85.md#spatial-transcriptomics-brain-msucqumok2idbsqs0000), [spatial-transcriptomics-brain-zpe8tsko9fa1kw9x0001](/datasets/md/09.md#spatial-transcriptomics-brain-zpe8tsko9fa1kw9x0001), [spatial-transcriptomics-brain-5c2br55uqancs3ks0000](/datasets/md/e8.md#spatial-transcriptomics-brain-5c2br55uqancs3ks0000), [spatial-transcriptomics-brain-23phl1pj3igvlvxx0000](/datasets/md/09.md#spatial-transcriptomics-brain-23phl1pj3igvlvxx0000), [spatial-transcriptomics-brain-vqtdgbwnckeoqopz0000](/datasets/md/51.md#spatial-transcriptomics-brain-vqtdgbwnckeoqopz0000), [spatial-transcriptomics-brain-csohxp2ng0mfrtcf0000](/datasets/md/7e.md#spatial-transcriptomics-brain-csohxp2ng0mfrtcf0000), [spatial-transcriptomics-brain-esdwehni0funoxvf0000](/datasets/md/3a.md#spatial-transcriptomics-brain-esdwehni0funoxvf0000), [spatial-transcriptomics-brain-jtcoibc4qbpbuivv0000](/datasets/md/46.md#spatial-transcriptomics-brain-jtcoibc4qbpbuivv0000), [spatial-transcriptomics-brain-d5btruq9sfj1bffa0000](/datasets/md/96.md#spatial-transcriptomics-brain-d5btruq9sfj1bffa0000), [spatial-transcriptomics-brain-dibkitlqf56ixlyj0000](/datasets/md/78.md#spatial-transcriptomics-brain-dibkitlqf56ixlyj0000), [spatial-transcriptomics-brain-zduyvdby0pkfkv0k0000](/datasets/md/7a.md#spatial-transcriptomics-brain-zduyvdby0pkfkv0k0000), [spatial-transcriptomics-brain-8tdh7kkfruzjpo530000](/datasets/md/13.md#spatial-transcriptomics-brain-8tdh7kkfruzjpo530000), [spatial-transcriptomics-brain-vkjigc5ymxptukeq0000](/datasets/md/3d.md#spatial-transcriptomics-brain-vkjigc5ymxptukeq0000), [spatial-transcriptomics-brain-kloxudrbcq2zj3tp0000](/datasets/md/23.md#spatial-transcriptomics-brain-kloxudrbcq2zj3tp0000), [spatial-transcriptomics-brain-9u1eefqmplw0yaoq0000](/datasets/md/77.md#spatial-transcriptomics-brain-9u1eefqmplw0yaoq0000), [spatial-transcriptomics-brain-zm736p8q62xuzcwo0000](/datasets/md/08.md#spatial-transcriptomics-brain-zm736p8q62xuzcwo0000), [spatial-transcriptomics-brain-k2jj6rk12wgxyopq0000](/datasets/md/91.md#spatial-transcriptomics-brain-k2jj6rk12wgxyopq0000), [spatial-transcriptomics-brain-qpmkqmkthvzi0kks0000](/datasets/md/41.md#spatial-transcriptomics-brain-qpmkqmkthvzi0kks0000), [spatial-transcriptomics-brain-nh5c7h5yz8gbbuib0000](/datasets/md/aa.md#spatial-transcriptomics-brain-nh5c7h5yz8gbbuib0000), [spatial-transcriptomics-brain-dtihhzem0cvvxvep0000](/datasets/md/c1.md#spatial-transcriptomics-brain-dtihhzem0cvvxvep0000), [spatial-transcriptomics-brain-pzo7rzdra64fvprd0000](/datasets/md/7b.md#spatial-transcriptomics-brain-pzo7rzdra64fvprd0000), [spatial-transcriptomics-brain-lwo1epp7jwnatr5x0000](/datasets/md/00.md#spatial-transcriptomics-brain-lwo1epp7jwnatr5x0000), [spatial-transcriptomics-brain-h3uifmw65fzhrsmh0000](/datasets/md/0b.md#spatial-transcriptomics-brain-h3uifmw65fzhrsmh0000), [spatial-transcriptomics-brain-i4endsj2r8asyavr0000](/datasets/md/4b.md#spatial-transcriptomics-brain-i4endsj2r8asyavr0000), [spatial-transcriptomics-brain-mrztiykdnuzis1vo0000](/datasets/md/2f.md#spatial-transcriptomics-brain-mrztiykdnuzis1vo0000), [spatial-transcriptomics-brain-jh3zcofrdizdcun40000](/datasets/md/1e.md#spatial-transcriptomics-brain-jh3zcofrdizdcun40000), [spatial-transcriptomics-brain-poah2ffcobviyssu0000](/datasets/md/83.md#spatial-transcriptomics-brain-poah2ffcobviyssu0000), [spatial-transcriptomics-brain-xiiujlgou46vzz1q0000](/datasets/md/8a.md#spatial-transcriptomics-brain-xiiujlgou46vzz1q0000), [spatial-transcriptomics-brain-cd1tswuqd8nceqqt0000](/datasets/md/9a.md#spatial-transcriptomics-brain-cd1tswuqd8nceqqt0000), [spatial-transcriptomics-brain-dfftswn90ovyqhnn0000](/datasets/md/db.md#spatial-transcriptomics-brain-dfftswn90ovyqhnn0000)

<a id="geo-gse322640"></a>
## geo-gse322640

- Page: /collections/geo-gse322640/
- Kind: comparison
- Datasets: 10
- Members: [visium-hd-bone-element-6iet1yk53xplaatq0000](/datasets/md/0d.md#visium-hd-bone-element-6iet1yk53xplaatq0000), [visium-hd-bone-element-hd32fl2yvdcwyqai0000](/datasets/md/e9.md#visium-hd-bone-element-hd32fl2yvdcwyqai0000), [visium-hd-bone-element-ocvwpbzg9dhgbesu0000](/datasets/md/0b.md#visium-hd-bone-element-ocvwpbzg9dhgbesu0000), [visium-hd-bone-element-xvk6t0rajftgokci0000](/datasets/md/a2.md#visium-hd-bone-element-xvk6t0rajftgokci0000), [visium-hd-bone-element-ypr1ti6rol0btjqn0001](/datasets/md/84.md#visium-hd-bone-element-ypr1ti6rol0btjqn0001), [visium-hd-bone-element-wsyy3ri9x0xgeb5u0000](/datasets/md/49.md#visium-hd-bone-element-wsyy3ri9x0xgeb5u0000), [visium-hd-bone-element-eqd0cbqeyjpflc6d0000](/datasets/md/de.md#visium-hd-bone-element-eqd0cbqeyjpflc6d0000), [visium-hd-bone-element-bzknjoca9mr3ci030000](/datasets/md/e5.md#visium-hd-bone-element-bzknjoca9mr3ci030000), [visium-hd-bone-element-dbbuxbefdedr96le0000](/datasets/md/13.md#visium-hd-bone-element-dbbuxbefdedr96le0000), [visium-hd-bone-element-nawb1syjfovavlj40001](/datasets/md/e3.md#visium-hd-bone-element-nawb1syjfovavlj40001)

<a id="geo-gse214611"></a>
## Single Cell Spatial Transcriptomics Redefines the Borderzone induced by Myocardial Infarction and Mechanical Injury

- Page: /collections/geo-gse214611/
- Kind: comparison
- Datasets: 14
- Reference: PMID:39086770
- Design: Gene expression profiling of 10x Genomic Chromium single nuclei RNA-Seq or Visium spatial transcriptomics from the left ventricular myocardium or short axis sections of healthy and injured adult male C57BL6 mouse hearts (8-12 weeks). Injuries include MI (permanent ligation of the LAD coronary artery), I/R-30 (30 minutes of ischemia followed by reperfusion), transaortic constriction, isoproterenol injection, and traumatic needle injection.  Please note that the processed data files for GSM6613081, GSM6613087, GSM6613090 have been replaced on May 18, 2023 as the previous files were incomplete (missing spatial data folder and .h5 matrix file).
- Members: [visium-spatial-gene-expression-heart-ifht1slwyifnyg2k0000](/datasets/md/1e.md#visium-spatial-gene-expression-heart-ifht1slwyifnyg2k0000), [visium-spatial-gene-expression-heart-aexbb1vjxkac1n1u0000](/datasets/md/02.md#visium-spatial-gene-expression-heart-aexbb1vjxkac1n1u0000), [visium-spatial-gene-expression-heart-xrqwwjjx3wbbskn10000](/datasets/md/a7.md#visium-spatial-gene-expression-heart-xrqwwjjx3wbbskn10000), [visium-spatial-gene-expression-heart-w2xbjuuynxbxgvgb0000](/datasets/md/bb.md#visium-spatial-gene-expression-heart-w2xbjuuynxbxgvgb0000), [visium-spatial-gene-expression-heart-pttmrpruw58nk3ay0000](/datasets/md/57.md#visium-spatial-gene-expression-heart-pttmrpruw58nk3ay0000), [visium-spatial-gene-expression-heart-51blgosgutt5qdlf0000](/datasets/md/bf.md#visium-spatial-gene-expression-heart-51blgosgutt5qdlf0000), [visium-spatial-gene-expression-heart-qjnsdpnx0wnssiwz0000](/datasets/md/f5.md#visium-spatial-gene-expression-heart-qjnsdpnx0wnssiwz0000), [visium-spatial-gene-expression-heart-cqcqf0egpeg3scmo0000](/datasets/md/cb.md#visium-spatial-gene-expression-heart-cqcqf0egpeg3scmo0000), [visium-spatial-gene-expression-heart-0f9p95ophhzt5zu30000](/datasets/md/a9.md#visium-spatial-gene-expression-heart-0f9p95ophhzt5zu30000), [visium-spatial-gene-expression-heart-dyv7oonszi97dtyd0000](/datasets/md/f7.md#visium-spatial-gene-expression-heart-dyv7oonszi97dtyd0000), [visium-spatial-gene-expression-heart-9tuvwiwt5hldgorp0000](/datasets/md/45.md#visium-spatial-gene-expression-heart-9tuvwiwt5hldgorp0000), [visium-spatial-gene-expression-heart-q2bpr797gbmltrpd0000](/datasets/md/5a.md#visium-spatial-gene-expression-heart-q2bpr797gbmltrpd0000), [visium-spatial-gene-expression-heart-wnr5znr3fi4msnax0000](/datasets/md/e1.md#visium-spatial-gene-expression-heart-wnr5znr3fi4msnax0000), [visium-spatial-gene-expression-heart-ymlorasrfxpn63tz0000](/datasets/md/0a.md#visium-spatial-gene-expression-heart-ymlorasrfxpn63tz0000)

<a id="geo-gse216189"></a>
## Fragment-sequencing unveils local tissue microenvironments at single cell resolution

- Page: /collections/geo-gse216189/
- Kind: other
- Datasets: 2
- Reference: PMID:38012149
- Design: Method development of fragment-sequencing (based on single cell RNA sequencing and cell hashing) and its application to metastatic mouse liver (9 replicates), untreated mouse liver (1 replicate), untreated mouse spleen (2 replicates), Crohn?s disease biopsies (2 replicates) and a mix of human and mouse colorectal cancer organoids (1 replicate). To compare Visium of metastatic mouse livers (2 replicates) and conventional scRNAseq of metastatic mouse livers (2 replicates) were performed.  Please note that the records have been updated with two additional samples on Feb 6th, 2023. Human samples were uploaded August 7th, 2023 and raw data were not provided due to patient privacy concerns.
- Members: [visium-spatial-gene-expression-liver-pebsu9xrclhjendm0000](/datasets/md/b8.md#visium-spatial-gene-expression-liver-pebsu9xrclhjendm0000), [visium-spatial-gene-expression-liver-2waykg6toz1msywr0000](/datasets/md/cf.md#visium-spatial-gene-expression-liver-2waykg6toz1msywr0000)

<a id="geo-gse216992"></a>
## Spatial transcriptomic profiling of Patient and Patient-corrected bioengineered vascular grafts.

- Page: /collections/geo-gse216992/
- Kind: comparison
- Datasets: 4
- Reference: PMID:38718134
- Design: A Loeys-Dietz syndrome-associated pathogenic variant in Patient induced pluripotent stem cells (PatientA230T/+) was corrected using CRISPR/Cas9 gene editing resulting in Patient-corrected (Patient+/+) cells. Patient-corrected (Patient+/+) samples are denoted as iWT in the sample identifiers. The resulting human induced pluripotent stem cells were differentiated into smooth muscle cells through cardiovascular progenitor cells. The smooth muscle cells were seeded on meshes to generate bioengineered vascular grafts. The bioengineered vascular grafts  were implanted into nude rats and were harvested at week 8 post-implantation. Formalin-Fixed Paraffin-Embedded (FFPE) sections of the harvested vascular grafts were processed using 10X Visium Spatial Gene expression for FFPE. Human transcriptome probe kit was used for the gene expression measurements.
- Members: [visium-spatial-gene-expression-blood-vessel-jqupaumjr8rxmmbh0000](/datasets/md/57.md#visium-spatial-gene-expression-blood-vessel-jqupaumjr8rxmmbh0000), [visium-spatial-gene-expression-blood-vessel-j8p4sanxulo6whu90000](/datasets/md/d6.md#visium-spatial-gene-expression-blood-vessel-j8p4sanxulo6whu90000), [visium-spatial-gene-expression-blood-vessel-tfr816qqjethdk8u0000](/datasets/md/82.md#visium-spatial-gene-expression-blood-vessel-tfr816qqjethdk8u0000), [visium-spatial-gene-expression-blood-vessel-e1rx1udgcmiocwep0000](/datasets/md/7f.md#visium-spatial-gene-expression-blood-vessel-e1rx1udgcmiocwep0000)

<a id="geo-gse218593"></a>
## Spatial epigenome-transcriptome co-profiling of mammalian tissues.

- Page: /collections/geo-gse218593/
- Kind: time course
- Datasets: 6
- Reference: 10.1038/s41586-023-05795-1
- Design: Spatially resolved co-sequencing of epigenome and transcriptome in mouse embryos and mouse brains.
- Members: [spatial-atac-seq-brain-3fbyhv2hqjnexwnt0000](/datasets/md/ec.md#spatial-atac-seq-brain-3fbyhv2hqjnexwnt0000), [spatial-cut-tag-brain-mvj6wuvvkakcfzs00000](/datasets/md/bb.md#spatial-cut-tag-brain-mvj6wuvvkakcfzs00000), [spatial-atac-seq-brain-ek76xy8hf6oxa1vp0000](/datasets/md/b3.md#spatial-atac-seq-brain-ek76xy8hf6oxa1vp0000), [spatial-cut-tag-brain-bquu5qyosipx0yeg0000](/datasets/md/f8.md#spatial-cut-tag-brain-bquu5qyosipx0yeg0000), [spatial-cut-tag-brain-binuxtqzfqn3ndxp0000](/datasets/md/44.md#spatial-cut-tag-brain-binuxtqzfqn3ndxp0000), [spatial-cut-tag-brain-41emcbbdim4u5dsw0000](/datasets/md/88.md#spatial-cut-tag-brain-41emcbbdim4u5dsw0000)

<a id="geo-gse224360"></a>
## PREGNANCY-RESPONSIVE POOLS OF ADULT NEURAL STEM CELLS FOR TRANSIENT NEUROGENESIS IN MOTHERS

- Page: /collections/geo-gse224360/
- Kind: comparison
- Datasets: 4
- Reference: PMID:37995223
- Design: Comparative analysis between four mouse brain samples; (i) one mother during perinatal care, (ii) one mother at peri-weaning, (iii) two age-matched virgins, was performed with the 10x Genomics Visium platform for fresh frozen samples. Spatial transcriptome analysis focused on the differential gene expression across these states and was performed both globally and also stratified within the corresponding spot clusters.
- Members: [visium-spatial-gene-expression-brain-uz9p4ur218vs9jc90000](/datasets/md/3d.md#visium-spatial-gene-expression-brain-uz9p4ur218vs9jc90000), [visium-spatial-gene-expression-brain-rbsobsv4dwqsxrkj0000](/datasets/md/7e.md#visium-spatial-gene-expression-brain-rbsobsv4dwqsxrkj0000), [visium-spatial-gene-expression-brain-b0modcq5oxfwdrpe0000](/datasets/md/37.md#visium-spatial-gene-expression-brain-b0modcq5oxfwdrpe0000), [visium-spatial-gene-expression-brain-mgslqvwg6bpj7lvq0000](/datasets/md/81.md#visium-spatial-gene-expression-brain-mgslqvwg6bpj7lvq0000)

<a id="geo-gse226997"></a>
## Visium Spatial transcriptomics analysis of human primary colorectal cancer

- Page: /collections/geo-gse226997/
- Kind: replicates
- Datasets: 4
- Reference: PMID:38446659
- Design: Visium analysis of four CRC patients
- Members: [visium-spatial-gene-expression-colorectum-0ypanyxcdkjmaaqm0000](/datasets/md/f3.md#visium-spatial-gene-expression-colorectum-0ypanyxcdkjmaaqm0000), [visium-spatial-gene-expression-colorectum-jqbmuj2pwe4vrkce0000](/datasets/md/c0.md#visium-spatial-gene-expression-colorectum-jqbmuj2pwe4vrkce0000), [visium-spatial-gene-expression-colorectum-clgksg6hk1dbemby0000](/datasets/md/13.md#visium-spatial-gene-expression-colorectum-clgksg6hk1dbemby0000), [visium-spatial-gene-expression-colorectum-etwgem211qdyxyxr0000](/datasets/md/6e.md#visium-spatial-gene-expression-colorectum-etwgem211qdyxyxr0000)

<a id="geo-gse238004"></a>
## Nextflow Pipeline for Visium and H&E Data from Patient-Derived Xenograft Samples

- Page: /collections/geo-gse238004/
- Kind: other
- Datasets: 4
- Reference: PMID:38626768
- Design: The PDX model WISTAR WM4237-1 is a BRAF V600E mutant metastatic melanoma of a subcutaneously implanted solid tumor on NSG mouse #1337, passage 0. The tumor was grown untreated by any therapy. The four samples are near adjacent tissue sections from the tumor tissue block. The samples were analyzed with 10x Visium Spatial Gene Expression.
- Members: [visium-spatial-gene-expression-skin-of-body-qlp8l12fqn0t722m0000](/datasets/md/fa.md#visium-spatial-gene-expression-skin-of-body-qlp8l12fqn0t722m0000), [visium-spatial-gene-expression-skin-of-body-dw1m7gzivn6c1cmz0000](/datasets/md/b7.md#visium-spatial-gene-expression-skin-of-body-dw1m7gzivn6c1cmz0000), [visium-spatial-gene-expression-skin-of-body-pybfvwv4kfdhimpc0000](/datasets/md/10.md#visium-spatial-gene-expression-skin-of-body-pybfvwv4kfdhimpc0000), [visium-spatial-gene-expression-skin-of-body-zvq8kfobkygetmnk0000](/datasets/md/76.md#visium-spatial-gene-expression-skin-of-body-zvq8kfobkygetmnk0000)

<a id="geo-gse248517"></a>
## Seeing the whole transcriptomics picture: Spatial gene expression analysis reveals photoreceptor stress as modulator of retinal vascular changes

- Page: /collections/geo-gse248517/
- Kind: comparison
- Datasets: 7
- Reference: PMID:40251274
- Design: Parasaggital cross-sections of C57Bl6/J mouse eyes were subjected to Visium spatial gene expression. Tissue from dim-reared (DR) controls was compared to tissue from a 1-day (1PD), 3-day (3PD) and 5-day (5PD) photo-oxidative damage time course, respectively. The experiments were performed in biological duplicates.
- Members: [visium-spatial-gene-expression-retina-pypegfdx8ey41gic0001](/datasets/md/99.md#visium-spatial-gene-expression-retina-pypegfdx8ey41gic0001), [visium-spatial-gene-expression-retina-rnqc5jycahxypndm0000](/datasets/md/77.md#visium-spatial-gene-expression-retina-rnqc5jycahxypndm0000), [visium-spatial-gene-expression-retina-kodo3zyfl7hxgycx0000](/datasets/md/48.md#visium-spatial-gene-expression-retina-kodo3zyfl7hxgycx0000), [visium-spatial-gene-expression-retina-wip59bi8kn10hbff0000](/datasets/md/03.md#visium-spatial-gene-expression-retina-wip59bi8kn10hbff0000), [visium-spatial-gene-expression-retina-v4cxtfuvhjr4a5hq0000](/datasets/md/76.md#visium-spatial-gene-expression-retina-v4cxtfuvhjr4a5hq0000), [visium-spatial-gene-expression-retina-tmsb5pl8kmiaxgmt0000](/datasets/md/68.md#visium-spatial-gene-expression-retina-tmsb5pl8kmiaxgmt0000), [visium-spatial-gene-expression-retina-hr37lxx2njq3ib9o0000](/datasets/md/29.md#visium-spatial-gene-expression-retina-hr37lxx2njq3ib9o0000)

<a id="geo-gse268014"></a>
## Spatial transcriptomic analysis of tumor heterogeneity in HPV+ and HPV- Head and Neck Squamous Cell Carcinoma

- Page: /collections/geo-gse268014/
- Kind: comparison
- Datasets: 26
- Reference: PMID:42601456
- Design: Human tumor samples were collected from patients undergoing surgery for head and neck squamous cell carcinoma. Samples were frozen in OCT, sectioned to 10 microns, and processed according to the 10X Visium Spatial Gene Expression protocol. Human tumor samples were collected from patients undergoing surgery for head and neck squamous cell carcinoma. Samples were were dissociated using the Miltenyi Human Tumor Dissociation Kit, cleaned with ACK RBC lysis, and sorted with CD45+ beads. Cells were loaded onto the 10X chip with a ratio of 70% CD45- and 30% CD45+ cells. cDNA libraries were prepared according to the 10X Chromium Next GEM Single Cell 3' Reagent Kits v3.1 protocol. Human tumor FFPE samples from patients who underwent surgery for head and neck squamous cell carcinoma were reviewed for tumor purity. Samples with DV200 values >30% were cut to 5 micron sections on slides according to the 10X Demonstrated Protocol. Regions of interest were placed in the tissue slide cassette, probe hybridization and ligation were performed and then slides were loaded onto the CytAssist instrument, per protocol. Samples were aligned to grch38 reference genome and 16 micron bin sizes were used for each sample.
- Members: [visium-spatial-gene-expression-mucosa-g7ivxua3orp3t1rw0000](/datasets/md/54.md#visium-spatial-gene-expression-mucosa-g7ivxua3orp3t1rw0000), [visium-spatial-gene-expression-mucosa-lybajhjdfoskxx040000](/datasets/md/15.md#visium-spatial-gene-expression-mucosa-lybajhjdfoskxx040000), [visium-spatial-gene-expression-mucosa-fanwxadhfjkytve70000](/datasets/md/64.md#visium-spatial-gene-expression-mucosa-fanwxadhfjkytve70000), [visium-spatial-gene-expression-mucosa-qh6gguiynye5mhcj0000](/datasets/md/3f.md#visium-spatial-gene-expression-mucosa-qh6gguiynye5mhcj0000), [visium-spatial-gene-expression-mucosa-uoqjlnhiyergbyej0000](/datasets/md/7e.md#visium-spatial-gene-expression-mucosa-uoqjlnhiyergbyej0000), [visium-spatial-gene-expression-mucosa-vyk7dohijaggzg6a0000](/datasets/md/b2.md#visium-spatial-gene-expression-mucosa-vyk7dohijaggzg6a0000), [visium-spatial-gene-expression-mucosa-bg5kfwharyetfmya0000](/datasets/md/d1.md#visium-spatial-gene-expression-mucosa-bg5kfwharyetfmya0000), [visium-spatial-gene-expression-mucosa-29vat5kybwrqdxx70000](/datasets/md/6b.md#visium-spatial-gene-expression-mucosa-29vat5kybwrqdxx70000), [visium-spatial-gene-expression-mucosa-itkffjv3nnrzzvdx0000](/datasets/md/84.md#visium-spatial-gene-expression-mucosa-itkffjv3nnrzzvdx0000), [visium-spatial-gene-expression-mucosa-twmasswlnfkdowby0000](/datasets/md/75.md#visium-spatial-gene-expression-mucosa-twmasswlnfkdowby0000), [visium-spatial-gene-expression-mucosa-mdhxduh2daoh627h0000](/datasets/md/72.md#visium-spatial-gene-expression-mucosa-mdhxduh2daoh627h0000), [visium-spatial-gene-expression-mucosa-yh9tpln4i07bnfhj0000](/datasets/md/33.md#visium-spatial-gene-expression-mucosa-yh9tpln4i07bnfhj0000), [visium-spatial-gene-expression-mucosa-476cc2cjbibfrwdy0000](/datasets/md/fe.md#visium-spatial-gene-expression-mucosa-476cc2cjbibfrwdy0000), [visium-spatial-gene-expression-mucosa-iiu7kvjbborybdna0000](/datasets/md/87.md#visium-spatial-gene-expression-mucosa-iiu7kvjbborybdna0000), [visium-spatial-gene-expression-mucosa-abhe2yubamk16p2w0000](/datasets/md/79.md#visium-spatial-gene-expression-mucosa-abhe2yubamk16p2w0000), [visium-spatial-gene-expression-mucosa-y3llbdatndolcan60000](/datasets/md/b9.md#visium-spatial-gene-expression-mucosa-y3llbdatndolcan60000), [visium-spatial-gene-expression-mucosa-yrpf6gepu2zctleh0000](/datasets/md/ce.md#visium-spatial-gene-expression-mucosa-yrpf6gepu2zctleh0000), [visium-spatial-gene-expression-mucosa-fbghxys74jt69npr0000](/datasets/md/e3.md#visium-spatial-gene-expression-mucosa-fbghxys74jt69npr0000), [visium-spatial-gene-expression-mucosa-0zk8wpmrwwaaegoq0000](/datasets/md/43.md#visium-spatial-gene-expression-mucosa-0zk8wpmrwwaaegoq0000), [visium-spatial-gene-expression-mucosa-o0isbqqiy4k0j1dc0000](/datasets/md/3e.md#visium-spatial-gene-expression-mucosa-o0isbqqiy4k0j1dc0000), [visium-spatial-gene-expression-mucosa-olcx3edjm5tul3om0000](/datasets/md/61.md#visium-spatial-gene-expression-mucosa-olcx3edjm5tul3om0000), [visium-spatial-gene-expression-mucosa-ar84pya6kkleezce0000](/datasets/md/65.md#visium-spatial-gene-expression-mucosa-ar84pya6kkleezce0000), [visium-spatial-gene-expression-mucosa-nci5sivu0pyt9twa0000](/datasets/md/25.md#visium-spatial-gene-expression-mucosa-nci5sivu0pyt9twa0000), [visium-spatial-gene-expression-mucosa-edplqvr5liwrpunh0000](/datasets/md/6d.md#visium-spatial-gene-expression-mucosa-edplqvr5liwrpunh0000), [visium-spatial-gene-expression-mucosa-lqx5leejn9xvi3tp0000](/datasets/md/a1.md#visium-spatial-gene-expression-mucosa-lqx5leejn9xvi3tp0000), [visium-spatial-gene-expression-mucosa-bkczgalzap1l8zmx0000](/datasets/md/66.md#visium-spatial-gene-expression-mucosa-bkczgalzap1l8zmx0000)

<a id="geo-gse254861"></a>
## Spatial transcriptomics reveals C10 tumor transcriptomic changes generated by Smarta cell transfer

- Page: /collections/geo-gse254861/
- Kind: other
- Datasets: 2
- Reference: PMID:42313973
- Design: C10 tumors from Rag1–/– mice, treated with either PBS or Smarta on day 4 post-tumor transplant, were dissected at day 10 and subjected to formalin-fixed and paraffin-embedded (FFPE) processing. Two 5 μm FFPE tissue sections were prepared for each condition and were conducted for spatial transcriptomics analysis.
- Members: [visium-spatial-gene-expression-lung-of5zunhvfcjupuna0000](/datasets/md/e9.md#visium-spatial-gene-expression-lung-of5zunhvfcjupuna0000), [visium-spatial-gene-expression-lung-4ofae5ugze0wwu0x0000](/datasets/md/07.md#visium-spatial-gene-expression-lung-4ofae5ugze0wwu0x0000)

<a id="geo-gse262998"></a>
## Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis

- Page: /collections/geo-gse262998/
- Kind: comparison
- Datasets: 4
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE262998
- Design: Spatial Transcriptomics for lungs from healthy individual and sarcoidosis patients.
- Members: [visium-spatial-gene-expression-lung-38uyctywivyxglef0000](/datasets/md/60.md#visium-spatial-gene-expression-lung-38uyctywivyxglef0000), [visium-spatial-gene-expression-lung-r6fjt5iuku2bjlp40000](/datasets/md/a2.md#visium-spatial-gene-expression-lung-r6fjt5iuku2bjlp40000), [visium-spatial-gene-expression-lung-bqhkfnzehbdotwiu0000](/datasets/md/59.md#visium-spatial-gene-expression-lung-bqhkfnzehbdotwiu0000), [visium-spatial-gene-expression-lung-0l44re6uyasjjlne0000](/datasets/md/cd.md#visium-spatial-gene-expression-lung-0l44re6uyasjjlne0000)

<a id="geo-gse274509"></a>
## Consequences of the perivascular niche remodeling for tumoricidal T-cell trafficking into metastasis of ovarian cancer [Spatial Transciptomics]

- Page: /collections/geo-gse274509/
- Kind: comparison
- Datasets: 4
- Reference: PMID:39372930
- Design: Changes in the perivascular tumor microenvironment within the ovarian cancer metastasis in MOVCAR 5009 tumor-bearing SCID mice were analyzed by Spatial Transcriptomic analysis using 10x Genomic Visium platform 10 days after the treatment.
- Members: [visium-spatial-gene-expression-ovary-qazlscoifzsciiy10000](/datasets/md/78.md#visium-spatial-gene-expression-ovary-qazlscoifzsciiy10000), [visium-spatial-gene-expression-ovary-c56vxrjloanoip710000](/datasets/md/2f.md#visium-spatial-gene-expression-ovary-c56vxrjloanoip710000), [visium-spatial-gene-expression-ovary-mctt2pqhftjcam8n0000](/datasets/md/7d.md#visium-spatial-gene-expression-ovary-mctt2pqhftjcam8n0000), [visium-spatial-gene-expression-ovary-w9ltqzvdrsh6uoxf0000](/datasets/md/05.md#visium-spatial-gene-expression-ovary-w9ltqzvdrsh6uoxf0000)

<a id="geo-gse287384"></a>
## Gas6-Axl signaling drives oral regenerative wound repair

- Page: /collections/geo-gse287384/
- Kind: comparison
- Datasets: 4
- Reference: PMID:40601775
- Design: Mouse wound tissue transcriptomes were profiled using single cell RNA sequencing, Visium spatial transcriptomics, and bulk RNA quencing. Tissue from wounds in oral mucosa and facial skin were compared. Timepoints include unwounded skin and oral mucosa, postoperative (POD) 2, 4, and 7.
- Members: [visium-spatial-gene-expression-skin-of-face-ejhy6vhvio9mvwo20000](/datasets/md/46.md#visium-spatial-gene-expression-skin-of-face-ejhy6vhvio9mvwo20000), [visium-spatial-gene-expression-mucosa-of-oral-region-kwyzehjacsjenv8u0000](/datasets/md/75.md#visium-spatial-gene-expression-mucosa-of-oral-region-kwyzehjacsjenv8u0000), [visium-spatial-gene-expression-mucosa-of-oral-region-bamurrjucxihndvw0000](/datasets/md/19.md#visium-spatial-gene-expression-mucosa-of-oral-region-bamurrjucxihndvw0000), [visium-spatial-gene-expression-skin-of-face-9ccqgfb1roc6az180000](/datasets/md/71.md#visium-spatial-gene-expression-skin-of-face-9ccqgfb1roc6az180000)

<a id="geo-gse289363"></a>
## Intratumoral spatiotemporal heterogeneity of HPV status in HPV-associated oropharyngeal squamous cell carcinoma with clinical record

- Page: /collections/geo-gse289363/
- Kind: replicates
- Datasets: 3
- Reference: PMID:41943047
- Design: Spatial transcriptomics was performed on 1 area from the formalin-fixed paraffin-embedded tissues of each of 3 patients.  *************************************************************** Raw files for human/patient samples were not submitted to GEO due to concerns about submitting personally identifiable sequence data for open access. ***************************************************************
- Members: [visium-spatial-gene-expression-palatine-tonsil-h9p40ugkeygw4dna0000](/datasets/md/b0.md#visium-spatial-gene-expression-palatine-tonsil-h9p40ugkeygw4dna0000), [visium-spatial-gene-expression-palatine-tonsil-zfktzjtede7udojm0000](/datasets/md/c7.md#visium-spatial-gene-expression-palatine-tonsil-zfktzjtede7udojm0000), [visium-spatial-gene-expression-palatine-tonsil-bviv81jwikdyrlrn0000](/datasets/md/2a.md#visium-spatial-gene-expression-palatine-tonsil-bviv81jwikdyrlrn0000)

<a id="geo-gse301265"></a>
## Spatial Transcriptomics Reveals Local Subtype-Specific Identity and Signaling within Multifocal Small Intestinal Neuroendocrine Tumors

- Page: /collections/geo-gse301265/
- Kind: replicates
- Datasets: 8
- Reference: PMID:41779010
- Design: Spatial transcriptomics was performed on 72 tissue microarray cores derived from four patients with multifocal SI-NETs, covering tumor and non-tumor tissues from various anatomical layers and metastatic sites. Unsupervised clustering, over-representation analysis (ORA), and ligand-receptor (L-R) pair analysis were used to define tumor subtypes and associated signaling networks.  *************************************************************** Raw files for human/patient samples were not submitted to GEO due to concerns about submitting personally identifiable sequence data for open access. ***************************************************************
- Members: [visium-spatial-gene-expression-small-intestine-xy5wcoofflgqu3su0000](/datasets/md/a8.md#visium-spatial-gene-expression-small-intestine-xy5wcoofflgqu3su0000), [visium-spatial-gene-expression-small-intestine-e1xmv6w7dqsuhjko0000](/datasets/md/8a.md#visium-spatial-gene-expression-small-intestine-e1xmv6w7dqsuhjko0000), [visium-spatial-gene-expression-small-intestine-waujovow1gr35k4w0000](/datasets/md/9a.md#visium-spatial-gene-expression-small-intestine-waujovow1gr35k4w0000), [visium-spatial-gene-expression-small-intestine-lnknhk3enqagi1g50000](/datasets/md/62.md#visium-spatial-gene-expression-small-intestine-lnknhk3enqagi1g50000), [visium-spatial-gene-expression-small-intestine-fusmp7phlucfaaup0000](/datasets/md/be.md#visium-spatial-gene-expression-small-intestine-fusmp7phlucfaaup0000), [visium-spatial-gene-expression-small-intestine-1oagn4asku2rgror0000](/datasets/md/5a.md#visium-spatial-gene-expression-small-intestine-1oagn4asku2rgror0000), [visium-spatial-gene-expression-small-intestine-aqngl7uqevw6tm8v0000](/datasets/md/c7.md#visium-spatial-gene-expression-small-intestine-aqngl7uqevw6tm8v0000), [visium-spatial-gene-expression-small-intestine-ufbhj5chsdoc7hre0000](/datasets/md/08.md#visium-spatial-gene-expression-small-intestine-ufbhj5chsdoc7hre0000)

<a id="geo-gse299708"></a>
## Spatial transcriptomics unveils estrogen-modulated immune responses and structural alterations in the ectocervical mucosa of depot medroxyprogesterone acetate users

- Page: /collections/geo-gse299708/
- Kind: other
- Datasets: 8
- Reference: PMID:39762272
- Design: In this study we compared gene expression between samples from women who had been using DMPA for more than 6 months (DMPA group; n=4), and non-hormonal contraceptives who were in the follicular menstrual stage (control group; n=4). Ectocervical tissue were obtained as part of our broader longitudinal investigation within the Sex Worker Outreach Program in Pumwani, Nairobi, Kenya  *************************************************************** Raw files for human/patient samples were not submitted to GEO due to concerns about submitting personally identifiable sequence data for open access. ***************************************************************
- Members: [visium-spatial-gene-expression-ectocervix-djfj29xo8yubcjes0000](/datasets/md/59.md#visium-spatial-gene-expression-ectocervix-djfj29xo8yubcjes0000), [visium-spatial-gene-expression-ectocervix-ucvxntbkrtismlly0000](/datasets/md/f3.md#visium-spatial-gene-expression-ectocervix-ucvxntbkrtismlly0000), [visium-spatial-gene-expression-ectocervix-w1xerxrkm3nv03yu0000](/datasets/md/2c.md#visium-spatial-gene-expression-ectocervix-w1xerxrkm3nv03yu0000), [visium-spatial-gene-expression-ectocervix-ivvit6sve0ecifba0000](/datasets/md/e7.md#visium-spatial-gene-expression-ectocervix-ivvit6sve0ecifba0000), [visium-spatial-gene-expression-ectocervix-yhuzivehiuyhbjlj0000](/datasets/md/f4.md#visium-spatial-gene-expression-ectocervix-yhuzivehiuyhbjlj0000), [visium-spatial-gene-expression-ectocervix-tl7m7bm1b0tvtbqo0000](/datasets/md/6b.md#visium-spatial-gene-expression-ectocervix-tl7m7bm1b0tvtbqo0000), [visium-spatial-gene-expression-ectocervix-6xuuffv5u96t5smk0000](/datasets/md/90.md#visium-spatial-gene-expression-ectocervix-6xuuffv5u96t5smk0000), [visium-spatial-gene-expression-ectocervix-jntj6vp8douob0nu0000](/datasets/md/35.md#visium-spatial-gene-expression-ectocervix-jntj6vp8douob0nu0000)

<a id="geo-gse307817"></a>
## A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease

- Page: /collections/geo-gse307817/
- Kind: other
- Datasets: 12
- Reference: PMID:42055320
- Design: FFPE preserved kidney samples underwent Visium Spatial Transcriptomics following 10X protocol. Histopathological features were correlated with neighborhood mapping and transcription factor activity.
- Members: [visium-spatial-gene-expression-kidney-tcn9nuxonsrtyx5n0000](/datasets/md/7c.md#visium-spatial-gene-expression-kidney-tcn9nuxonsrtyx5n0000), [visium-spatial-gene-expression-kidney-lemufxsy8owmyr4z0000](/datasets/md/a0.md#visium-spatial-gene-expression-kidney-lemufxsy8owmyr4z0000), [visium-spatial-gene-expression-kidney-d1jra8uvfl6bc2vn0000](/datasets/md/4e.md#visium-spatial-gene-expression-kidney-d1jra8uvfl6bc2vn0000), [visium-spatial-gene-expression-kidney-gzdg3otibaewwtby0000](/datasets/md/96.md#visium-spatial-gene-expression-kidney-gzdg3otibaewwtby0000), [visium-spatial-gene-expression-kidney-kc94vblm3j8qhbws0000](/datasets/md/67.md#visium-spatial-gene-expression-kidney-kc94vblm3j8qhbws0000), [visium-spatial-gene-expression-kidney-wyen4dmslr9eaeih0000](/datasets/md/66.md#visium-spatial-gene-expression-kidney-wyen4dmslr9eaeih0000), [visium-spatial-gene-expression-kidney-zajkyfhbdgaom0bp0000](/datasets/md/ee.md#visium-spatial-gene-expression-kidney-zajkyfhbdgaom0bp0000), [visium-spatial-gene-expression-kidney-my72fhf5mrkcmkbj0000](/datasets/md/34.md#visium-spatial-gene-expression-kidney-my72fhf5mrkcmkbj0000), [visium-spatial-gene-expression-kidney-bc4nhvcwnu1dmcrp0000](/datasets/md/8f.md#visium-spatial-gene-expression-kidney-bc4nhvcwnu1dmcrp0000), [visium-spatial-gene-expression-kidney-kjpqjrg3smcms0860000](/datasets/md/af.md#visium-spatial-gene-expression-kidney-kjpqjrg3smcms0860000), [visium-spatial-gene-expression-kidney-makdmul6vd22bzkn0000](/datasets/md/ea.md#visium-spatial-gene-expression-kidney-makdmul6vd22bzkn0000), [visium-spatial-gene-expression-kidney-ikvfnbgy2ncvblir0000](/datasets/md/75.md#visium-spatial-gene-expression-kidney-ikvfnbgy2ncvblir0000)

<a id="geo-gse310351"></a>
## Spatial transcriptomic profiling of human saphenous vein grafts reveals molecular remodeling and smooth muscle cell phenotypic transition during early neointima proliferation

- Page: /collections/geo-gse310351/
- Kind: time course
- Datasets: 6
- Reference: PMID:41569144
- Design: Spatial transcriptomic analysis was performed on freshly harvested (Day 0) and ex vivo cultured (Day 7) human saphenous veins using the 10x Genomics Visium platform. Sections were collected from three biological replicates per time point and processed for library preparation and sequencing on the Illumina NovaSeq 6000 platform.
- Members: [visium-spatial-gene-expression-saphenous-vein-fjub19s57c49cizn0000](/datasets/md/e5.md#visium-spatial-gene-expression-saphenous-vein-fjub19s57c49cizn0000), [visium-spatial-gene-expression-saphenous-vein-86kejehbs4geei3g0000](/datasets/md/05.md#visium-spatial-gene-expression-saphenous-vein-86kejehbs4geei3g0000), [visium-spatial-gene-expression-saphenous-vein-hy3pzsmpwfuql3r50000](/datasets/md/4e.md#visium-spatial-gene-expression-saphenous-vein-hy3pzsmpwfuql3r50000), [visium-spatial-gene-expression-saphenous-vein-ximqhrak1hybebgt0000](/datasets/md/b4.md#visium-spatial-gene-expression-saphenous-vein-ximqhrak1hybebgt0000), [visium-spatial-gene-expression-saphenous-vein-kixx3uyanvafxbn60000](/datasets/md/f9.md#visium-spatial-gene-expression-saphenous-vein-kixx3uyanvafxbn60000), [visium-spatial-gene-expression-saphenous-vein-utdaef4yhm1oquws0000](/datasets/md/9f.md#visium-spatial-gene-expression-saphenous-vein-utdaef4yhm1oquws0000)

<a id="geo-gse312129"></a>
## Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling

- Page: /collections/geo-gse312129/
- Kind: other
- Datasets: 10
- Reference: PMID:41411065
- Design: Single nuclei RNA and ATAC sequencing and with paired spatial sequencing on 10 human scleroderma skin tissues and 4 control samples.
- Members: [visium-spatial-gene-expression-zone-of-skin-8if49ekrwllia4kc0001](/datasets/md/ae.md#visium-spatial-gene-expression-zone-of-skin-8if49ekrwllia4kc0001), [visium-spatial-gene-expression-zone-of-skin-ihukryvvhfcuojw20000](/datasets/md/d1.md#visium-spatial-gene-expression-zone-of-skin-ihukryvvhfcuojw20000), [visium-spatial-gene-expression-zone-of-skin-4ctcxsnu1uqrewuy0000](/datasets/md/73.md#visium-spatial-gene-expression-zone-of-skin-4ctcxsnu1uqrewuy0000), [visium-spatial-gene-expression-zone-of-skin-ocooietbyk15jvif0000](/datasets/md/58.md#visium-spatial-gene-expression-zone-of-skin-ocooietbyk15jvif0000), [visium-spatial-gene-expression-zone-of-skin-wz2gvqhhnvvaxdb10000](/datasets/md/70.md#visium-spatial-gene-expression-zone-of-skin-wz2gvqhhnvvaxdb10000), [visium-spatial-gene-expression-zone-of-skin-chveycg6wpgxmu160000](/datasets/md/22.md#visium-spatial-gene-expression-zone-of-skin-chveycg6wpgxmu160000), [visium-spatial-gene-expression-zone-of-skin-evxo2txycllfoejq0000](/datasets/md/e1.md#visium-spatial-gene-expression-zone-of-skin-evxo2txycllfoejq0000), [visium-spatial-gene-expression-zone-of-skin-u4psqhjm4df5yia30000](/datasets/md/b1.md#visium-spatial-gene-expression-zone-of-skin-u4psqhjm4df5yia30000), [visium-spatial-gene-expression-zone-of-skin-qoohytorgsabxnuf0000](/datasets/md/4f.md#visium-spatial-gene-expression-zone-of-skin-qoohytorgsabxnuf0000), [visium-spatial-gene-expression-zone-of-skin-sgewvoovz66ukd4s0000](/datasets/md/ad.md#visium-spatial-gene-expression-zone-of-skin-sgewvoovz66ukd4s0000)

<a id="geo-gse317987"></a>
## Spatial mapping of Ethiopian cutaneous leishmaniasis lesions reveals patient-defined immune signatures

- Page: /collections/geo-gse317987/
- Kind: comparison
- Datasets: 10
- Reference: PMID:42553130
- Design: We enrolled six participants from the Spatial CL study investigating host-parasite interactions in Ethiopian CL at the Leishmaniasis Research and Treatment Centre (LRTC), University Hospital of Gondar (Gondar, Amhara Province, Ethiopia) between March-May 2022 with follow-up until November 2022. Participants were selected to represent diverse clinical presentations: localized cutaneous leishmaniasis (LCL, n=2), mucocutaneous leishmaniasis (MCL, n=2), and diffuse cutaneous leishmaniasis (DCL, n=2). Inclusion and exclusion criteria are available at Clinicaltrials.gov. Leishmania infection was verified by microscopy of Giemsa-stained skin slits and kDNA PCR of skin slit smears. Parasite genotyping by ITS-1 high-resolution melt PCR. After enrolment, 4mm and 2mm punch biopsies (KAI Medical, Solingen, Germany) were collected from lesional (index lesion) and non-lesional skin (upper thigh or shoulder), respectively, snap-frozen in liquid nitrogen within 15 minutes, and stored frozen until Visium processing (10X Genomics, CA, USA).Frozen tissue blocks were sectioned at 10 μm thickness and initial sections from each sample was assessed for RNA quality (RNA Integrity Number, RIN; 2.2-8.7).  Due to low RIN values, we adapted the 10x Genomics Visium FFPE protocol for frozen sections. SureSelect identified two L. aethiopica (P1, P2) and one L. tropica (P5) infection. Following clinical reassessment, one patient initially classified as DCL was diagnosed with leprosy and excluded; the remaining five patients (P1-P5) included two with mucosal involvement (P1, P3) and three with purely cutaneous lesions on the arm (P2), neck (P4), and leg (P5). Clinical data was collected and recorded in a REDCap database contributor: SPATIAL CL, CONSORTIUM
- Members: [visium-spatial-gene-expression-skin-of-body-iyrj3lvmwvdomhsd0001](/datasets/md/51.md#visium-spatial-gene-expression-skin-of-body-iyrj3lvmwvdomhsd0001), [visium-spatial-gene-expression-skin-of-body-xgw5wdddqxsgzoxg0000](/datasets/md/6f.md#visium-spatial-gene-expression-skin-of-body-xgw5wdddqxsgzoxg0000), [visium-spatial-gene-expression-skin-of-body-kspzsdtlwnuykrj10000](/datasets/md/5d.md#visium-spatial-gene-expression-skin-of-body-kspzsdtlwnuykrj10000), [visium-spatial-gene-expression-skin-of-body-sytvf8cieyyceexz0000](/datasets/md/d3.md#visium-spatial-gene-expression-skin-of-body-sytvf8cieyyceexz0000), [visium-spatial-gene-expression-skin-of-body-bqf1pcdx5huzi1zc0000](/datasets/md/11.md#visium-spatial-gene-expression-skin-of-body-bqf1pcdx5huzi1zc0000), [visium-spatial-gene-expression-skin-of-body-lkacgscvrxh8hein0000](/datasets/md/04.md#visium-spatial-gene-expression-skin-of-body-lkacgscvrxh8hein0000), [visium-spatial-gene-expression-skin-of-body-6wtvxapx8utsismr0000](/datasets/md/c8.md#visium-spatial-gene-expression-skin-of-body-6wtvxapx8utsismr0000), [visium-spatial-gene-expression-skin-of-body-ghpxdfuxad0mp9bp0000](/datasets/md/8d.md#visium-spatial-gene-expression-skin-of-body-ghpxdfuxad0mp9bp0000), [visium-spatial-gene-expression-skin-of-body-c49u2regbesa7p5h0000](/datasets/md/e6.md#visium-spatial-gene-expression-skin-of-body-c49u2regbesa7p5h0000), [visium-spatial-gene-expression-skin-of-body-3kate4uz3ragsc5l0000](/datasets/md/fd.md#visium-spatial-gene-expression-skin-of-body-3kate4uz3ragsc5l0000)

<a id="geo-gse326660"></a>
## Reprogramming engineered autologous T cells to overcome resistance in patients with Merkel cell carcinoma [Xenium]

- Page: /collections/geo-gse326660/
- Kind: time course
- Datasets: 6
- Reference: PMID:42715345
- Design: Xenium in situ gene expression profiling was performed on formalin-fixed paraffin-embedded (FFPE) tumor sections from MCC patients using a 480-gene custom panel. This dataset provides spatial localization of tumor and immune cell populations in the tumor microenvironment.
- Members: [10x-xenium-skin-of-body-ghopztosgpheckuk0000](/datasets/md/c8.md#10x-xenium-skin-of-body-ghopztosgpheckuk0000), [10x-xenium-pelvic-lymph-node-cy1mkqmsnunb6it30000](/datasets/md/a1.md#10x-xenium-pelvic-lymph-node-cy1mkqmsnunb6it30000), [10x-xenium-pelvic-lymph-node-pok6nljasa1egirn0000](/datasets/md/80.md#10x-xenium-pelvic-lymph-node-pok6nljasa1egirn0000), [10x-xenium-skin-of-body-26fo6idsilpxq0mx0000](/datasets/md/eb.md#10x-xenium-skin-of-body-26fo6idsilpxq0mx0000), [10x-xenium-pelvic-lymph-node-bvfoh4orvfbdxokl0000](/datasets/md/e0.md#10x-xenium-pelvic-lymph-node-bvfoh4orvfbdxokl0000), [10x-xenium-pelvic-lymph-node-uuif4yiwyw6g2g4t0000](/datasets/md/e0.md#10x-xenium-pelvic-lymph-node-uuif4yiwyw6g2g4t0000)

<a id="geo-gse327056"></a>
## Spatial transcriptomic profiling of human pancreatic ductal adenocarcinoma  using 10x Genomics Visium platform

- Page: /collections/geo-gse327056/
- Kind: comparison
- Datasets: 4
- Reference: PMID:42100437
- Design: the study employed the 10x Genomics Visium platform for spatial transcriptomics analysis of normal pancreatic tissue, pancreatic cancer tissue, adjacent tumor tissue, and tumor stroma.
- Members: [visium-spatial-gene-expression-pancreas-psimvgo8htpsltwf0000](/datasets/md/d1.md#visium-spatial-gene-expression-pancreas-psimvgo8htpsltwf0000), [visium-spatial-gene-expression-pancreas-3jo9sylyliaqvixd0000](/datasets/md/2a.md#visium-spatial-gene-expression-pancreas-3jo9sylyliaqvixd0000), [visium-spatial-gene-expression-pancreas-pxqwf2h5c1gbtsj10000](/datasets/md/bf.md#visium-spatial-gene-expression-pancreas-pxqwf2h5c1gbtsj10000), [visium-spatial-gene-expression-pancreas-yuf0wamm9pzaz5aa0000](/datasets/md/fa.md#visium-spatial-gene-expression-pancreas-yuf0wamm9pzaz5aa0000)

<a id="geo-gse334323"></a>
## Custom Probe-Based Spatial Transcriptomics Enables Microbiome Detection in FFPE Colorectal Cancer Tissue

- Page: /collections/geo-gse334323/
- Kind: comparison
- Datasets: 6
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE334323
- Design: Four colorectal cancer patients contributed six FFPE tissue sections comprising three tumor and three normal adjacent (NAT) specimens, with matched tumor-NAT pairs available for two patients and unmatched samples for the remaining two. Each section was simultaneously profiled for host transcriptome and intratumoral bacterial composition using a custom 16S rRNA probe panel on the 10X Genomics Visium CytAssist platform.
- Members: [visium-spatial-gene-expression-colon-rmy1eewrm1rzvdyx0000](/datasets/md/ff.md#visium-spatial-gene-expression-colon-rmy1eewrm1rzvdyx0000), [visium-spatial-gene-expression-colon-qcge4iapt3jyyamz0000](/datasets/md/4d.md#visium-spatial-gene-expression-colon-qcge4iapt3jyyamz0000), [visium-spatial-gene-expression-colon-tbclc5z5nkufjcms0000](/datasets/md/d1.md#visium-spatial-gene-expression-colon-tbclc5z5nkufjcms0000), [visium-spatial-gene-expression-colon-geyvrphznhaumq1m0000](/datasets/md/f9.md#visium-spatial-gene-expression-colon-geyvrphznhaumq1m0000), [visium-spatial-gene-expression-colon-afvnxtewymmuusle0000](/datasets/md/f4.md#visium-spatial-gene-expression-colon-afvnxtewymmuusle0000), [visium-spatial-gene-expression-colon-mxs1cbfjzkguzfvq0000](/datasets/md/70.md#visium-spatial-gene-expression-colon-mxs1cbfjzkguzfvq0000)

<a id="hest-regional-differential-gene-expression-analyses-of-brains-from-four-24w-old-nf1-mice"></a>
## Regional differential gene expression analyses of brains from four 24w-old Nf1+- mice

- Page: /collections/hest-regional-differential-gene-expression-analyses-of-brains-from-four-24w-old-nf1-mice/
- Kind: other
- Datasets: 4
- Members: [visium-spatial-gene-expression-brain-pqepl0e65imfxnpa0000](/datasets/md/ee.md#visium-spatial-gene-expression-brain-pqepl0e65imfxnpa0000), [visium-spatial-gene-expression-brain-g85ipesc3ek9hstn0000](/datasets/md/c8.md#visium-spatial-gene-expression-brain-g85ipesc3ek9hstn0000), [visium-spatial-gene-expression-brain-rdzafpzqnc5whj3i0000](/datasets/md/ae.md#visium-spatial-gene-expression-brain-rdzafpzqnc5whj3i0000), [visium-spatial-gene-expression-brain-vrigkhmbiqnx9rvw0000](/datasets/md/44.md#visium-spatial-gene-expression-brain-vrigkhmbiqnx9rvw0000)

<a id="hest-yap-drives-assembly-of-a-spatially-colocalized-cellular-triad-required-for-heart-renewal"></a>
## YAP Drives Assembly of a Spatially Colocalized Cellular Triad Required for Heart Renewal

- Page: /collections/hest-yap-drives-assembly-of-a-spatially-colocalized-cellular-triad-required-for-heart-renewal/
- Kind: comparison
- Datasets: 2
- Members: [visium-spatial-gene-expression-heart-rtqo6bzbvnzidqie0000](/datasets/md/4d.md#visium-spatial-gene-expression-heart-rtqo6bzbvnzidqie0000), [visium-spatial-gene-expression-heart-ahzjhfhit5xrgs4s0000](/datasets/md/a2.md#visium-spatial-gene-expression-heart-ahzjhfhit5xrgs4s0000)

<a id="geo-gse342709"></a>
## Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium]

- Page: /collections/geo-gse342709/
- Kind: replicates
- Datasets: 48
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE342709
- Design: Fifty-one total Visium samples of the human postmortem amygdala from seven different donors. The samples cover the extent of one coronal section of the amygdala per donor.  *************************************************************** human privacy. Raw-data will be available on the database of Genotypes and Phenotypes (dbGaP) Platform. ***************************************************************
- Members: [visium-spatial-gene-expression-amygdala-h31ejkplrt797yr60000](/datasets/md/16.md#visium-spatial-gene-expression-amygdala-h31ejkplrt797yr60000), [visium-spatial-gene-expression-amygdala-w6i5fgzvpbs19bhj0000](/datasets/md/47.md#visium-spatial-gene-expression-amygdala-w6i5fgzvpbs19bhj0000), [visium-spatial-gene-expression-amygdala-yizenqkqehvkyfbe0001](/datasets/md/ff.md#visium-spatial-gene-expression-amygdala-yizenqkqehvkyfbe0001), [visium-spatial-gene-expression-amygdala-uiosflafbk34z3fu0000](/datasets/md/6f.md#visium-spatial-gene-expression-amygdala-uiosflafbk34z3fu0000), [visium-spatial-gene-expression-amygdala-tl8zwncrys4tit8g0000](/datasets/md/26.md#visium-spatial-gene-expression-amygdala-tl8zwncrys4tit8g0000), [visium-spatial-gene-expression-amygdala-ezajszagf833wdki0000](/datasets/md/c8.md#visium-spatial-gene-expression-amygdala-ezajszagf833wdki0000), [visium-spatial-gene-expression-amygdala-m4om3d4laxbf2gt60000](/datasets/md/ff.md#visium-spatial-gene-expression-amygdala-m4om3d4laxbf2gt60000), [visium-spatial-gene-expression-amygdala-supj75umhfkqtkz80000](/datasets/md/99.md#visium-spatial-gene-expression-amygdala-supj75umhfkqtkz80000), [visium-spatial-gene-expression-amygdala-nyokmepdochdmfu30000](/datasets/md/91.md#visium-spatial-gene-expression-amygdala-nyokmepdochdmfu30000), [visium-spatial-gene-expression-amygdala-eawumftut3zoldmv0000](/datasets/md/4f.md#visium-spatial-gene-expression-amygdala-eawumftut3zoldmv0000), [visium-spatial-gene-expression-amygdala-xe3r49zze0rcavhc0000](/datasets/md/57.md#visium-spatial-gene-expression-amygdala-xe3r49zze0rcavhc0000), [visium-spatial-gene-expression-amygdala-eyhzu3w9hs8m10wq0000](/datasets/md/8c.md#visium-spatial-gene-expression-amygdala-eyhzu3w9hs8m10wq0000), [visium-spatial-gene-expression-amygdala-pkn2jzbnjf2bhtw20000](/datasets/md/d6.md#visium-spatial-gene-expression-amygdala-pkn2jzbnjf2bhtw20000), [visium-spatial-gene-expression-amygdala-ghn2pttnbbm66l7r0000](/datasets/md/63.md#visium-spatial-gene-expression-amygdala-ghn2pttnbbm66l7r0000), [visium-spatial-gene-expression-amygdala-9zevgp67w9vogecp0000](/datasets/md/31.md#visium-spatial-gene-expression-amygdala-9zevgp67w9vogecp0000), [visium-spatial-gene-expression-amygdala-k7qa6gkirnmurigt0000](/datasets/md/01.md#visium-spatial-gene-expression-amygdala-k7qa6gkirnmurigt0000), [visium-spatial-gene-expression-amygdala-5fkhchdiqw56k2ji0000](/datasets/md/b3.md#visium-spatial-gene-expression-amygdala-5fkhchdiqw56k2ji0000), [visium-spatial-gene-expression-amygdala-rlvvqhknvbwswbud0000](/datasets/md/b3.md#visium-spatial-gene-expression-amygdala-rlvvqhknvbwswbud0000), [visium-spatial-gene-expression-amygdala-btxwkuy5bnxjzedc0000](/datasets/md/02.md#visium-spatial-gene-expression-amygdala-btxwkuy5bnxjzedc0000), [visium-spatial-gene-expression-amygdala-o5rcryuljhyxjjb40000](/datasets/md/cf.md#visium-spatial-gene-expression-amygdala-o5rcryuljhyxjjb40000), [visium-spatial-gene-expression-amygdala-1lwpdzcfmt3k4pck0000](/datasets/md/3b.md#visium-spatial-gene-expression-amygdala-1lwpdzcfmt3k4pck0000), [visium-spatial-gene-expression-amygdala-d9ew8rhwtrw3jchu0000](/datasets/md/5b.md#visium-spatial-gene-expression-amygdala-d9ew8rhwtrw3jchu0000), [visium-spatial-gene-expression-amygdala-qjigbzgfneij1csi0000](/datasets/md/7d.md#visium-spatial-gene-expression-amygdala-qjigbzgfneij1csi0000), [visium-spatial-gene-expression-amygdala-2jjqpw8nsin46iky0000](/datasets/md/85.md#visium-spatial-gene-expression-amygdala-2jjqpw8nsin46iky0000), [visium-spatial-gene-expression-amygdala-v20ilokiiggf0w5z0000](/datasets/md/59.md#visium-spatial-gene-expression-amygdala-v20ilokiiggf0w5z0000), [visium-spatial-gene-expression-amygdala-pop38gxeehtzs3f10000](/datasets/md/c2.md#visium-spatial-gene-expression-amygdala-pop38gxeehtzs3f10000), [visium-spatial-gene-expression-amygdala-tiudslpjheykxs4v0000](/datasets/md/70.md#visium-spatial-gene-expression-amygdala-tiudslpjheykxs4v0000), [visium-spatial-gene-expression-amygdala-5xq7vjsgkdgumm060000](/datasets/md/ba.md#visium-spatial-gene-expression-amygdala-5xq7vjsgkdgumm060000), [visium-spatial-gene-expression-amygdala-xgfzm0oqukmopmnc0000](/datasets/md/b8.md#visium-spatial-gene-expression-amygdala-xgfzm0oqukmopmnc0000), [visium-spatial-gene-expression-amygdala-ykx5n7rwgcrits0x0000](/datasets/md/d2.md#visium-spatial-gene-expression-amygdala-ykx5n7rwgcrits0x0000), [visium-spatial-gene-expression-amygdala-syj0cmtinivwvrjy0000](/datasets/md/80.md#visium-spatial-gene-expression-amygdala-syj0cmtinivwvrjy0000), [visium-spatial-gene-expression-amygdala-31r372usxtilghpe0000](/datasets/md/76.md#visium-spatial-gene-expression-amygdala-31r372usxtilghpe0000), [visium-spatial-gene-expression-amygdala-wgtpfsfrlsepf8pb0000](/datasets/md/ee.md#visium-spatial-gene-expression-amygdala-wgtpfsfrlsepf8pb0000), [visium-spatial-gene-expression-amygdala-isb2hzhcyu3jxy7l0000](/datasets/md/0b.md#visium-spatial-gene-expression-amygdala-isb2hzhcyu3jxy7l0000), [visium-spatial-gene-expression-amygdala-wfvutyzxqkpzia8e0000](/datasets/md/9e.md#visium-spatial-gene-expression-amygdala-wfvutyzxqkpzia8e0000), [visium-spatial-gene-expression-amygdala-wsyu1ljo8fxd4rfw0000](/datasets/md/14.md#visium-spatial-gene-expression-amygdala-wsyu1ljo8fxd4rfw0000), [visium-spatial-gene-expression-amygdala-ysrs7ugny8krlcrg0000](/datasets/md/41.md#visium-spatial-gene-expression-amygdala-ysrs7ugny8krlcrg0000), [visium-spatial-gene-expression-amygdala-btplii4wi68ahanr0000](/datasets/md/78.md#visium-spatial-gene-expression-amygdala-btplii4wi68ahanr0000), [visium-spatial-gene-expression-amygdala-kyby9efjypczumsq0000](/datasets/md/cc.md#visium-spatial-gene-expression-amygdala-kyby9efjypczumsq0000), [visium-spatial-gene-expression-amygdala-vjwmydjyvd6ro1br0000](/datasets/md/a0.md#visium-spatial-gene-expression-amygdala-vjwmydjyvd6ro1br0000), [visium-spatial-gene-expression-amygdala-hyin65shqzeypmlt0000](/datasets/md/45.md#visium-spatial-gene-expression-amygdala-hyin65shqzeypmlt0000), [visium-spatial-gene-expression-amygdala-zs2rm84zhpui7owv0000](/datasets/md/0e.md#visium-spatial-gene-expression-amygdala-zs2rm84zhpui7owv0000), [visium-spatial-gene-expression-amygdala-3mmdoy9m8feucoxj0000](/datasets/md/1f.md#visium-spatial-gene-expression-amygdala-3mmdoy9m8feucoxj0000), [visium-spatial-gene-expression-amygdala-ypbh4qq84awaotip0000](/datasets/md/5d.md#visium-spatial-gene-expression-amygdala-ypbh4qq84awaotip0000), [visium-spatial-gene-expression-amygdala-j7xn3qqjzf0dwq3c0000](/datasets/md/05.md#visium-spatial-gene-expression-amygdala-j7xn3qqjzf0dwq3c0000), [visium-spatial-gene-expression-amygdala-pfqv9o3vyze9dgzv0000](/datasets/md/a2.md#visium-spatial-gene-expression-amygdala-pfqv9o3vyze9dgzv0000), [visium-spatial-gene-expression-amygdala-jw6bh8pwlobphkmr0000](/datasets/md/e1.md#visium-spatial-gene-expression-amygdala-jw6bh8pwlobphkmr0000), [visium-spatial-gene-expression-amygdala-tebtj3a5kax10idw0000](/datasets/md/2d.md#visium-spatial-gene-expression-amygdala-tebtj3a5kax10idw0000)

<a id="geo-gse346090"></a>
## Distinct IL‑17A and retinoic acid–associated gene programs are enriched in epithelialized tunnels in severe hidradenitis suppurativa.

- Page: /collections/geo-gse346090/
- Kind: other
- Datasets: 5
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE346090
- Design: 10X Visium spatial transcriptomics was performed on five lesional hidradenitis skin samples. Tunnels within lesions were identified and compared to the overlying epidermis through differential gene expression analyses. Samples were compared to genes in primary keratinocytes when exposed to all-trans retinoic acid or HS-relevant cytokines.
- Members: [visium-spatial-gene-expression-skin-of-body-ginguxak4qlwrzir0000](/datasets/md/77.md#visium-spatial-gene-expression-skin-of-body-ginguxak4qlwrzir0000), [visium-spatial-gene-expression-skin-of-body-pvtvpdugihlo8rf70000](/datasets/md/c9.md#visium-spatial-gene-expression-skin-of-body-pvtvpdugihlo8rf70000), [visium-spatial-gene-expression-skin-of-body-1haj9pifzeahfpvn0000](/datasets/md/83.md#visium-spatial-gene-expression-skin-of-body-1haj9pifzeahfpvn0000), [visium-spatial-gene-expression-skin-of-body-5lcjntonycz0g3c80000](/datasets/md/53.md#visium-spatial-gene-expression-skin-of-body-5lcjntonycz0g3c80000), [visium-spatial-gene-expression-skin-of-body-eu44i3rowjkwcvdk0000](/datasets/md/4a.md#visium-spatial-gene-expression-skin-of-body-eu44i3rowjkwcvdk0000)

<a id="bia-s-biad2100"></a>
## Spatialproteomics - an interoperable toolbox for analyzing highly multiplexed fluorescence image data

- Page: /collections/bia-s-biad2100/
- Kind: replicates
- Datasets: 177
- Reference: 10.1101/2025.04.29.651202
- Members: [phenocycler-fusion-lymph-node-qpvfmwmutemww8290000](/datasets/md/82.md#phenocycler-fusion-lymph-node-qpvfmwmutemww8290000), [phenocycler-fusion-lymph-node-5jxlxfloqgjxbgmm0000](/datasets/md/49.md#phenocycler-fusion-lymph-node-5jxlxfloqgjxbgmm0000), [phenocycler-fusion-lymph-node-u52auvcuxeuszdv00000](/datasets/md/e7.md#phenocycler-fusion-lymph-node-u52auvcuxeuszdv00000), [phenocycler-fusion-lymph-node-gqle06jefhpb6bf70000](/datasets/md/02.md#phenocycler-fusion-lymph-node-gqle06jefhpb6bf70000), [phenocycler-fusion-lymph-node-5ot3yspufpmlsfse0000](/datasets/md/97.md#phenocycler-fusion-lymph-node-5ot3yspufpmlsfse0000), [phenocycler-fusion-lymph-node-g4ckhcxyfpchi0e20000](/datasets/md/97.md#phenocycler-fusion-lymph-node-g4ckhcxyfpchi0e20000), [phenocycler-fusion-lymph-node-yywsz9yexcxuvjue0000](/datasets/md/f9.md#phenocycler-fusion-lymph-node-yywsz9yexcxuvjue0000), [phenocycler-fusion-lymph-node-nhigp5yeky7osvq70000](/datasets/md/15.md#phenocycler-fusion-lymph-node-nhigp5yeky7osvq70000), [phenocycler-fusion-lymph-node-tumfrdryiwdcvk780000](/datasets/md/f9.md#phenocycler-fusion-lymph-node-tumfrdryiwdcvk780000), [phenocycler-fusion-lymph-node-yvidv9srufs0ms0c0000](/datasets/md/7e.md#phenocycler-fusion-lymph-node-yvidv9srufs0ms0c0000), [phenocycler-fusion-lymph-node-vxfxfercjkzshcy20000](/datasets/md/03.md#phenocycler-fusion-lymph-node-vxfxfercjkzshcy20000), [phenocycler-fusion-lymph-node-hjhen9mazr3d4vxr0000](/datasets/md/22.md#phenocycler-fusion-lymph-node-hjhen9mazr3d4vxr0000), [phenocycler-fusion-lymph-node-ldtsif9uvmkhgsk80000](/datasets/md/16.md#phenocycler-fusion-lymph-node-ldtsif9uvmkhgsk80000), [phenocycler-fusion-lymph-node-vyhckyxafjtf1rlp0000](/datasets/md/fe.md#phenocycler-fusion-lymph-node-vyhckyxafjtf1rlp0000), [phenocycler-fusion-lymph-node-jliqjnrsmvple15y0000](/datasets/md/70.md#phenocycler-fusion-lymph-node-jliqjnrsmvple15y0000), [phenocycler-fusion-lymph-node-4ljvjr3wjuu3f3no0000](/datasets/md/99.md#phenocycler-fusion-lymph-node-4ljvjr3wjuu3f3no0000), [phenocycler-fusion-lymph-node-upfxnn3m42eexrql0000](/datasets/md/63.md#phenocycler-fusion-lymph-node-upfxnn3m42eexrql0000), [phenocycler-fusion-lymph-node-otn6clafmfps3kxh0000](/datasets/md/8a.md#phenocycler-fusion-lymph-node-otn6clafmfps3kxh0000), [phenocycler-fusion-lymph-node-hkux3gcdl5co67m70000](/datasets/md/ed.md#phenocycler-fusion-lymph-node-hkux3gcdl5co67m70000), [phenocycler-fusion-lymph-node-aok3y1za9bonvzvx0000](/datasets/md/96.md#phenocycler-fusion-lymph-node-aok3y1za9bonvzvx0000), [phenocycler-fusion-lymph-node-4s3kydrlso3bg4it0000](/datasets/md/98.md#phenocycler-fusion-lymph-node-4s3kydrlso3bg4it0000), [phenocycler-fusion-lymph-node-rof7vrveeljl1xra0000](/datasets/md/91.md#phenocycler-fusion-lymph-node-rof7vrveeljl1xra0000), [phenocycler-fusion-lymph-node-or0plzuzxixtgxod0000](/datasets/md/3e.md#phenocycler-fusion-lymph-node-or0plzuzxixtgxod0000), [phenocycler-fusion-lymph-node-xxonqtzbxpihgmnx0000](/datasets/md/38.md#phenocycler-fusion-lymph-node-xxonqtzbxpihgmnx0000), [phenocycler-fusion-lymph-node-3p19adypivriognn0000](/datasets/md/15.md#phenocycler-fusion-lymph-node-3p19adypivriognn0000), [phenocycler-fusion-lymph-node-dgdnj1hnxmkqudqw0000](/datasets/md/bb.md#phenocycler-fusion-lymph-node-dgdnj1hnxmkqudqw0000), [phenocycler-fusion-lymph-node-rriuzcveiqhpfmsr0000](/datasets/md/e8.md#phenocycler-fusion-lymph-node-rriuzcveiqhpfmsr0000), [phenocycler-fusion-lymph-node-pxe0lk7bsrsqbolv0000](/datasets/md/6c.md#phenocycler-fusion-lymph-node-pxe0lk7bsrsqbolv0000), [phenocycler-fusion-lymph-node-pub9ay39y5rbqto40000](/datasets/md/34.md#phenocycler-fusion-lymph-node-pub9ay39y5rbqto40000), [phenocycler-fusion-lymph-node-zh5gmabolegabv8b0000](/datasets/md/54.md#phenocycler-fusion-lymph-node-zh5gmabolegabv8b0000), [phenocycler-fusion-lymph-node-bzcahskj3jzubvzm0000](/datasets/md/64.md#phenocycler-fusion-lymph-node-bzcahskj3jzubvzm0000), [phenocycler-fusion-lymph-node-sfmdfyh6dsyymgjr0000](/datasets/md/03.md#phenocycler-fusion-lymph-node-sfmdfyh6dsyymgjr0000), [phenocycler-fusion-lymph-node-q8ypr3rcvnovv5tf0000](/datasets/md/b4.md#phenocycler-fusion-lymph-node-q8ypr3rcvnovv5tf0000), [phenocycler-fusion-lymph-node-2t0zzphdatprtop50000](/datasets/md/fd.md#phenocycler-fusion-lymph-node-2t0zzphdatprtop50000), [phenocycler-fusion-lymph-node-tlhb030qmzacja9l0000](/datasets/md/7a.md#phenocycler-fusion-lymph-node-tlhb030qmzacja9l0000), [phenocycler-fusion-lymph-node-un91nig70bfvmxd40000](/datasets/md/5e.md#phenocycler-fusion-lymph-node-un91nig70bfvmxd40000), [phenocycler-fusion-lymph-node-eyhw00xi7sxkavju0000](/datasets/md/4b.md#phenocycler-fusion-lymph-node-eyhw00xi7sxkavju0000), [phenocycler-fusion-lymph-node-uxavisgralqlwzcq0000](/datasets/md/2b.md#phenocycler-fusion-lymph-node-uxavisgralqlwzcq0000), [phenocycler-fusion-lymph-node-u8vzlc6fcn554oei0000](/datasets/md/2e.md#phenocycler-fusion-lymph-node-u8vzlc6fcn554oei0000), [phenocycler-fusion-lymph-node-0qowaanuozxlc7fa0000](/datasets/md/89.md#phenocycler-fusion-lymph-node-0qowaanuozxlc7fa0000), [phenocycler-fusion-lymph-node-dbnyx3hlu6r5zguz0000](/datasets/md/8b.md#phenocycler-fusion-lymph-node-dbnyx3hlu6r5zguz0000), [phenocycler-fusion-lymph-node-y07z20hr9ns6nhb10000](/datasets/md/fc.md#phenocycler-fusion-lymph-node-y07z20hr9ns6nhb10000), [phenocycler-fusion-lymph-node-2i34fqkn0wxnsn7q0000](/datasets/md/ad.md#phenocycler-fusion-lymph-node-2i34fqkn0wxnsn7q0000), [phenocycler-fusion-lymph-node-cr1ozbgru231xbki0000](/datasets/md/18.md#phenocycler-fusion-lymph-node-cr1ozbgru231xbki0000), [phenocycler-fusion-lymph-node-p0xknxgcxesix8uo0000](/datasets/md/b6.md#phenocycler-fusion-lymph-node-p0xknxgcxesix8uo0000), [phenocycler-fusion-lymph-node-bw6pxxmbst1prxdz0000](/datasets/md/c7.md#phenocycler-fusion-lymph-node-bw6pxxmbst1prxdz0000), [phenocycler-fusion-lymph-node-qfccvisxftzj0s8z0000](/datasets/md/68.md#phenocycler-fusion-lymph-node-qfccvisxftzj0s8z0000), [phenocycler-fusion-lymph-node-usj3mv0neeqgbee30000](/datasets/md/f1.md#phenocycler-fusion-lymph-node-usj3mv0neeqgbee30000), [phenocycler-fusion-lymph-node-4skub1nvstar6bmv0000](/datasets/md/68.md#phenocycler-fusion-lymph-node-4skub1nvstar6bmv0000), [phenocycler-fusion-lymph-node-rfufbhxysfcivk7z0000](/datasets/md/4f.md#phenocycler-fusion-lymph-node-rfufbhxysfcivk7z0000), [phenocycler-fusion-lymph-node-1fba0ljohfocj9ln0000](/datasets/md/b7.md#phenocycler-fusion-lymph-node-1fba0ljohfocj9ln0000), [phenocycler-fusion-lymph-node-gwdxm1rc56s4heco0000](/datasets/md/32.md#phenocycler-fusion-lymph-node-gwdxm1rc56s4heco0000), [phenocycler-fusion-lymph-node-72za12ebeci4tzsa0000](/datasets/md/94.md#phenocycler-fusion-lymph-node-72za12ebeci4tzsa0000), [phenocycler-fusion-lymph-node-hsff1fnxfywtnqxa0000](/datasets/md/ba.md#phenocycler-fusion-lymph-node-hsff1fnxfywtnqxa0000), [phenocycler-fusion-lymph-node-bnfvrrvkg8u3eolv0000](/datasets/md/34.md#phenocycler-fusion-lymph-node-bnfvrrvkg8u3eolv0000), [phenocycler-fusion-lymph-node-rs6ulk8t8hnium8k0000](/datasets/md/41.md#phenocycler-fusion-lymph-node-rs6ulk8t8hnium8k0000), [phenocycler-fusion-lymph-node-24mc8lfjfvikm6v20000](/datasets/md/2f.md#phenocycler-fusion-lymph-node-24mc8lfjfvikm6v20000), [phenocycler-fusion-lymph-node-enlkt2qby3hj1p8u0000](/datasets/md/35.md#phenocycler-fusion-lymph-node-enlkt2qby3hj1p8u0000), [phenocycler-fusion-lymph-node-kcdtjf8pmrfxpa750000](/datasets/md/6c.md#phenocycler-fusion-lymph-node-kcdtjf8pmrfxpa750000), [phenocycler-fusion-lymph-node-0fexv6aphslw5m3w0000](/datasets/md/5d.md#phenocycler-fusion-lymph-node-0fexv6aphslw5m3w0000), [phenocycler-fusion-lymph-node-2e8rkjr3rfhmeqwb0000](/datasets/md/ec.md#phenocycler-fusion-lymph-node-2e8rkjr3rfhmeqwb0000), [phenocycler-fusion-lymph-node-0zr3d0lc2amd7lzy0000](/datasets/md/e3.md#phenocycler-fusion-lymph-node-0zr3d0lc2amd7lzy0000), [phenocycler-fusion-lymph-node-xlbeuu9xbqqx3ffh0000](/datasets/md/8b.md#phenocycler-fusion-lymph-node-xlbeuu9xbqqx3ffh0000), [phenocycler-fusion-lymph-node-uncnvq2pbst1zni80000](/datasets/md/72.md#phenocycler-fusion-lymph-node-uncnvq2pbst1zni80000), [phenocycler-fusion-lymph-node-zkxi3vzf65qfrgjb0000](/datasets/md/37.md#phenocycler-fusion-lymph-node-zkxi3vzf65qfrgjb0000), [phenocycler-fusion-lymph-node-hpxnwg5g5llqqbbi0000](/datasets/md/82.md#phenocycler-fusion-lymph-node-hpxnwg5g5llqqbbi0000), [phenocycler-fusion-lymph-node-xp1df1nbxlsjbsj90000](/datasets/md/1e.md#phenocycler-fusion-lymph-node-xp1df1nbxlsjbsj90000), [phenocycler-fusion-lymph-node-vkeyr6ym0gtm40bv0000](/datasets/md/fe.md#phenocycler-fusion-lymph-node-vkeyr6ym0gtm40bv0000), [phenocycler-fusion-lymph-node-melm0l8xka9ybapc0000](/datasets/md/85.md#phenocycler-fusion-lymph-node-melm0l8xka9ybapc0000), [phenocycler-fusion-lymph-node-dw1a8jjg5nzrklo90000](/datasets/md/4b.md#phenocycler-fusion-lymph-node-dw1a8jjg5nzrklo90000), [phenocycler-fusion-lymph-node-rpxsuz8sjahbtkp00000](/datasets/md/5a.md#phenocycler-fusion-lymph-node-rpxsuz8sjahbtkp00000), 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[phenocycler-fusion-lymph-node-x243nrcjjeoaf1s60000](/datasets/md/0a.md#phenocycler-fusion-lymph-node-x243nrcjjeoaf1s60000), [phenocycler-fusion-lymph-node-sqjrgizjemn2fqb70000](/datasets/md/24.md#phenocycler-fusion-lymph-node-sqjrgizjemn2fqb70000), [phenocycler-fusion-lymph-node-zzag9fscmse5qtog0000](/datasets/md/c9.md#phenocycler-fusion-lymph-node-zzag9fscmse5qtog0000), [phenocycler-fusion-lymph-node-on8xvrmtkgih7lwu0000](/datasets/md/d9.md#phenocycler-fusion-lymph-node-on8xvrmtkgih7lwu0000), [phenocycler-fusion-lymph-node-5ffswjiemu2rjzvm0000](/datasets/md/a7.md#phenocycler-fusion-lymph-node-5ffswjiemu2rjzvm0000), [phenocycler-fusion-lymph-node-hctdyqo6skpscn0j0000](/datasets/md/7f.md#phenocycler-fusion-lymph-node-hctdyqo6skpscn0j0000), [phenocycler-fusion-lymph-node-zvzfmwo7vkzuzzyi0000](/datasets/md/21.md#phenocycler-fusion-lymph-node-zvzfmwo7vkzuzzyi0000), [phenocycler-fusion-lymph-node-9rum3zd6keppxcje0000](/datasets/md/90.md#phenocycler-fusion-lymph-node-9rum3zd6keppxcje0000), 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