# SpatialData-DB collections, shard 4

Generated from catalog release catalog-2026-11-01. Each collection has an anchor named after its slug, and every page on the site links its own section. The guide for agents is /llms.txt.

<a id="geo-gse309565-vestibular-ganglion"></a>
## Morphological and functional diversity of spatially resolved vestibular ganglion neuron cell types.

- Page: /collections/geo-gse309565-vestibular-ganglion/
- Kind: comparison
- Datasets: 2
- Reference: 10.1073/pnas.2530677123
- Design: Tissue sections were hybridized with gene-specific probes (Hybridization Kit, 10x Genomics, PN-1000466/PN-1000667), followed by ligation (Ligase, PN-2000425) to stabilize probe connections. Sections were aligned to the Visium HD slide capture area (6.5X6.5 mm), and probes were transferred using the CytAssist instrument. Released probes were captured by the slide's poly-T oligos and extended to incorporate UMIs, spatial barcodes, and sequencing adapters. The barcoded cDNA was amplified, bead-purified, and ligated with dual-index adapters to construct sequencing libraries. Library concentration was quantified using a Qubit 3.0 fluorometer (Thermo Fisher, Q33216), and fragment size distribution was analyzed with an Agilent 2100 Bioanalyzer (Agilent, G2939AA). Qualified libraries were sequenced on an Illumina platform under PE150 mode to generate high-quality spatial transcriptomic data.
- Members: [visium-hd-vestibular-ganglion-23ms517dzrv5v6nc0000](/datasets/md/ce.md#visium-hd-vestibular-ganglion-23ms517dzrv5v6nc0000), [visium-hd-vestibular-ganglion-zjmyzcgrw4ljsqqj0000](/datasets/md/ea.md#visium-hd-vestibular-ganglion-zjmyzcgrw4ljsqqj0000)

<a id="bia-s-biad2491"></a>
## bia-s-biad2491

- Page: /collections/bia-s-biad2491/
- Kind: other
- Datasets: 2
- Members: [phenocycler-fusion-tonsil-frzjqc459f4cdz200000](/datasets/md/7a.md#phenocycler-fusion-tonsil-frzjqc459f4cdz200000), [phenocycler-fusion-tonsil-efldlbq4e6qbcl4d0000](/datasets/md/0f.md#phenocycler-fusion-tonsil-efldlbq4e6qbcl4d0000)

<a id="10x-ffpe-human-pancreas-with-xenium-multimodal-cell-segmentation"></a>
## 10x-ffpe-human-pancreas-with-xenium-multimodal-cell-segmentation

- Page: /collections/10x-ffpe-human-pancreas-with-xenium-multimodal-cell-segmentation/
- Kind: other
- Datasets: 1
- Members: [10x-xenium-pancreas-ilea4ms6c9s1ovbg0005](/datasets/md/d1.md#10x-xenium-pancreas-ilea4ms6c9s1ovbg0005)

<a id="doi-10-1038-s41467-023-39717-6"></a>
## Genome-wide mapping of cancer dependency genes and genetic modifiers of chemotherapy in high-risk hepatoblastoma.

- Page: /collections/doi-10-1038-s41467-023-39717-6/
- Kind: publication
- Datasets: 10
- Reference: 10.1038/s41467-023-39717-6
- Members: [visium-spatial-gene-expression-liver-kvgqlxlhywrme5jk0000](/datasets/md/fe.md#visium-spatial-gene-expression-liver-kvgqlxlhywrme5jk0000), [visium-spatial-gene-expression-liver-qtgej64ymbuyhjt90000](/datasets/md/b4.md#visium-spatial-gene-expression-liver-qtgej64ymbuyhjt90000), [visium-spatial-gene-expression-liver-zxngwlxiwpggfthq0000](/datasets/md/45.md#visium-spatial-gene-expression-liver-zxngwlxiwpggfthq0000), [visium-spatial-gene-expression-liver-hvnnxo1h0owdvuzm0000](/datasets/md/61.md#visium-spatial-gene-expression-liver-hvnnxo1h0owdvuzm0000), [visium-spatial-gene-expression-liver-p8thfgfw1wjsarhs0000](/datasets/md/94.md#visium-spatial-gene-expression-liver-p8thfgfw1wjsarhs0000), [visium-spatial-gene-expression-liver-afhfeafatt6cpupr0000](/datasets/md/18.md#visium-spatial-gene-expression-liver-afhfeafatt6cpupr0000), [visium-spatial-gene-expression-liver-irxnupqyc0vnwdju0000](/datasets/md/87.md#visium-spatial-gene-expression-liver-irxnupqyc0vnwdju0000), [visium-spatial-gene-expression-liver-6tfv5dlo0lxyiikf0000](/datasets/md/d7.md#visium-spatial-gene-expression-liver-6tfv5dlo0lxyiikf0000), [visium-spatial-gene-expression-liver-ah5vwatqifxor3xm0000](/datasets/md/c1.md#visium-spatial-gene-expression-liver-ah5vwatqifxor3xm0000), [visium-spatial-gene-expression-liver-ssnmgsggkf8cdxg50000](/datasets/md/75.md#visium-spatial-gene-expression-liver-ssnmgsggkf8cdxg50000)

<a id="doi-10-1038-s41467-023-40314-w"></a>
## Schwann cells regulate tumor cells and cancer-associated fibroblasts in the pancreatic ductal adenocarcinoma microenvironment.

- Page: /collections/doi-10-1038-s41467-023-40314-w/
- Kind: publication
- Datasets: 4
- Reference: 10.1038/s41467-023-40314-w
- Members: [visium-spatial-gene-expression-pancreas-7q43livcz3yfmaex0000](/datasets/md/8d.md#visium-spatial-gene-expression-pancreas-7q43livcz3yfmaex0000), [visium-spatial-gene-expression-pancreas-orj9vx1iis0pyvic0000](/datasets/md/55.md#visium-spatial-gene-expression-pancreas-orj9vx1iis0pyvic0000), [visium-spatial-gene-expression-pancreas-urwo68jluiz6idm20000](/datasets/md/7b.md#visium-spatial-gene-expression-pancreas-urwo68jluiz6idm20000), [visium-spatial-gene-expression-pancreas-b29nr7ts0svorisv0000](/datasets/md/0a.md#visium-spatial-gene-expression-pancreas-b29nr7ts0svorisv0000)

<a id="doi-10-1101-2022-10-25-513696"></a>
## Expansion Spatial Transcriptomics

- Page: /collections/doi-10-1101-2022-10-25-513696/
- Kind: publication
- Datasets: 5
- Reference: 10.1101/2022.10.25.513696
- Members: [visium-spatial-gene-expression-brain-smwnb5rc3t0hd85u0000](/datasets/md/14.md#visium-spatial-gene-expression-brain-smwnb5rc3t0hd85u0000), [visium-spatial-gene-expression-brain-g1yn7lskkximesxv0000](/datasets/md/ee.md#visium-spatial-gene-expression-brain-g1yn7lskkximesxv0000), [visium-spatial-gene-expression-brain-hl8gls8wzyxpavti0000](/datasets/md/54.md#visium-spatial-gene-expression-brain-hl8gls8wzyxpavti0000), [visium-spatial-gene-expression-brain-pcsgu4flsqjokfxl0000](/datasets/md/b7.md#visium-spatial-gene-expression-brain-pcsgu4flsqjokfxl0000), [visium-spatial-gene-expression-brain-bhhf3jcxygvojwsr0000](/datasets/md/8d.md#visium-spatial-gene-expression-brain-bhhf3jcxygvojwsr0000)

<a id="doi-10-1126-science-aaf2403"></a>
## Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.

- Page: /collections/doi-10-1126-science-aaf2403/
- Kind: comparison
- Datasets: 84
- Reference: 10.1126/science.aaf2403
- Members: [spatial-transcriptomics-brain-qcsjrzjk2zuvpxuu0000](/datasets/md/0c.md#spatial-transcriptomics-brain-qcsjrzjk2zuvpxuu0000), [spatial-transcriptomics-breast-kmw4fmgd5oqmjqnc0000](/datasets/md/f5.md#spatial-transcriptomics-breast-kmw4fmgd5oqmjqnc0000), [spatial-transcriptomics-breast-l3gzt4ymiexzd62r0000](/datasets/md/e3.md#spatial-transcriptomics-breast-l3gzt4ymiexzd62r0000), [spatial-transcriptomics-breast-y7jkflcnycl9ukia0000](/datasets/md/5e.md#spatial-transcriptomics-breast-y7jkflcnycl9ukia0000), [spatial-transcriptomics-brain-vzuimtfj3acvjgyl0000](/datasets/md/9e.md#spatial-transcriptomics-brain-vzuimtfj3acvjgyl0000), [spatial-transcriptomics-breast-gfxyykrbouk8rcpi0000](/datasets/md/fe.md#spatial-transcriptomics-breast-gfxyykrbouk8rcpi0000), [spatial-transcriptomics-breast-a3mrljbjap86qmp90000](/datasets/md/8a.md#spatial-transcriptomics-breast-a3mrljbjap86qmp90000), [spatial-transcriptomics-breast-53oqgdhizwwo0mvd0000](/datasets/md/3c.md#spatial-transcriptomics-breast-53oqgdhizwwo0mvd0000), [spatial-transcriptomics-breast-q57tcdf8c45o6ps70000](/datasets/md/64.md#spatial-transcriptomics-breast-q57tcdf8c45o6ps70000), [spatial-transcriptomics-breast-dcobknpllt6vysca0000](/datasets/md/35.md#spatial-transcriptomics-breast-dcobknpllt6vysca0000), [spatial-transcriptomics-brain-htgzqu22hdxysapx0000](/datasets/md/1d.md#spatial-transcriptomics-brain-htgzqu22hdxysapx0000), [spatial-transcriptomics-breast-fte3202ufjmjxgxs0000](/datasets/md/cf.md#spatial-transcriptomics-breast-fte3202ufjmjxgxs0000), [spatial-transcriptomics-breast-sjvcerdwhgasyga20000](/datasets/md/f7.md#spatial-transcriptomics-breast-sjvcerdwhgasyga20000), [spatial-transcriptomics-breast-iadfavxavlwzxbxw0000](/datasets/md/db.md#spatial-transcriptomics-breast-iadfavxavlwzxbxw0000), [spatial-transcriptomics-breast-xl2k98kmczkvxgyq0000](/datasets/md/ef.md#spatial-transcriptomics-breast-xl2k98kmczkvxgyq0000), [spatial-transcriptomics-breast-ymg1th8sxyp7in6h0000](/datasets/md/8b.md#spatial-transcriptomics-breast-ymg1th8sxyp7in6h0000), [spatial-transcriptomics-brain-8gtlz9hujtbsqixv0000](/datasets/md/37.md#spatial-transcriptomics-brain-8gtlz9hujtbsqixv0000), [spatial-transcriptomics-breast-zjsqvirqz08d9oaf0000](/datasets/md/b3.md#spatial-transcriptomics-breast-zjsqvirqz08d9oaf0000), [spatial-transcriptomics-breast-qrcpqy6nc8fy2rbs0000](/datasets/md/be.md#spatial-transcriptomics-breast-qrcpqy6nc8fy2rbs0000), [spatial-transcriptomics-brain-su2dvvunszkdpyfh0000](/datasets/md/e0.md#spatial-transcriptomics-brain-su2dvvunszkdpyfh0000), [spatial-transcriptomics-brain-y6anmkmyhwspyaww0000](/datasets/md/ec.md#spatial-transcriptomics-brain-y6anmkmyhwspyaww0000), [spatial-transcriptomics-breast-sj28va6yfx5gcgzg0002](/datasets/md/43.md#spatial-transcriptomics-breast-sj28va6yfx5gcgzg0002), [spatial-transcriptomics-breast-dmqsldupjlpcjvng0000](/datasets/md/1c.md#spatial-transcriptomics-breast-dmqsldupjlpcjvng0000), [spatial-transcriptomics-breast-bv0bptoakedaze0n0000](/datasets/md/c4.md#spatial-transcriptomics-breast-bv0bptoakedaze0n0000), [spatial-transcriptomics-breast-isldsps6orqgu5o20000](/datasets/md/aa.md#spatial-transcriptomics-breast-isldsps6orqgu5o20000), [spatial-transcriptomics-breast-pufm0bcmudwdiaqy0000](/datasets/md/89.md#spatial-transcriptomics-breast-pufm0bcmudwdiaqy0000), [spatial-transcriptomics-breast-ufbvhrwvuqiabcbq0000](/datasets/md/c1.md#spatial-transcriptomics-breast-ufbvhrwvuqiabcbq0000), [spatial-transcriptomics-brain-arc7qgx3izfij1cz0000](/datasets/md/48.md#spatial-transcriptomics-brain-arc7qgx3izfij1cz0000), [spatial-transcriptomics-breast-2faa54zwmbksom2v0000](/datasets/md/2e.md#spatial-transcriptomics-breast-2faa54zwmbksom2v0000), [spatial-transcriptomics-breast-qpjn9wuflpkchl5h0000](/datasets/md/bd.md#spatial-transcriptomics-breast-qpjn9wuflpkchl5h0000), [spatial-transcriptomics-breast-fcssss0no79nk2bo0000](/datasets/md/83.md#spatial-transcriptomics-breast-fcssss0no79nk2bo0000), [spatial-transcriptomics-breast-n9zv1hrj9ybwqheg0000](/datasets/md/bf.md#spatial-transcriptomics-breast-n9zv1hrj9ybwqheg0000), [spatial-transcriptomics-breast-jpc7nm6ycrzobde70000](/datasets/md/82.md#spatial-transcriptomics-breast-jpc7nm6ycrzobde70000), [spatial-transcriptomics-breast-r4luimfcgdvuxurz0000](/datasets/md/35.md#spatial-transcriptomics-breast-r4luimfcgdvuxurz0000), [spatial-transcriptomics-breast-8oq6bhobxkoxj2ec0001](/datasets/md/29.md#spatial-transcriptomics-breast-8oq6bhobxkoxj2ec0001), [spatial-transcriptomics-breast-d0zfrruh5lse875e0000](/datasets/md/db.md#spatial-transcriptomics-breast-d0zfrruh5lse875e0000), [spatial-transcriptomics-breast-s0pbp4cruxdcc58w0000](/datasets/md/42.md#spatial-transcriptomics-breast-s0pbp4cruxdcc58w0000), [spatial-transcriptomics-brain-wtk4qak42xfqfkqv0000](/datasets/md/ad.md#spatial-transcriptomics-brain-wtk4qak42xfqfkqv0000), [spatial-transcriptomics-breast-7wbhnsienpfxwito0000](/datasets/md/17.md#spatial-transcriptomics-breast-7wbhnsienpfxwito0000), [spatial-transcriptomics-breast-xvznyq7fmxjjuzxo0000](/datasets/md/04.md#spatial-transcriptomics-breast-xvznyq7fmxjjuzxo0000), [spatial-transcriptomics-breast-dq07ifijiouhhmrr0000](/datasets/md/2e.md#spatial-transcriptomics-breast-dq07ifijiouhhmrr0000), [spatial-transcriptomics-breast-itye69qny1umrovz0000](/datasets/md/e8.md#spatial-transcriptomics-breast-itye69qny1umrovz0000), [spatial-transcriptomics-breast-rfx3l4pcu4shvldn0000](/datasets/md/a8.md#spatial-transcriptomics-breast-rfx3l4pcu4shvldn0000), [spatial-transcriptomics-breast-noofbst2yd2dlaum0000](/datasets/md/f9.md#spatial-transcriptomics-breast-noofbst2yd2dlaum0000), [spatial-transcriptomics-breast-vql5d2jffbbffffh0000](/datasets/md/a5.md#spatial-transcriptomics-breast-vql5d2jffbbffffh0000), [spatial-transcriptomics-breast-lg22osxs5mdaivra0000](/datasets/md/ac.md#spatial-transcriptomics-breast-lg22osxs5mdaivra0000), [spatial-transcriptomics-breast-7u8b4ljigb1duxrr0000](/datasets/md/3d.md#spatial-transcriptomics-breast-7u8b4ljigb1duxrr0000), [spatial-transcriptomics-breast-naspclnynder2v6l0000](/datasets/md/2b.md#spatial-transcriptomics-breast-naspclnynder2v6l0000), [spatial-transcriptomics-breast-sqzdpkz5alotlh8y0000](/datasets/md/39.md#spatial-transcriptomics-breast-sqzdpkz5alotlh8y0000), [spatial-transcriptomics-breast-yah0sae6tl0sataz0000](/datasets/md/e3.md#spatial-transcriptomics-breast-yah0sae6tl0sataz0000), [spatial-transcriptomics-breast-g0ha5umw97roap8w0000](/datasets/md/8b.md#spatial-transcriptomics-breast-g0ha5umw97roap8w0000), [spatial-transcriptomics-breast-zmc3wuv6hni0cmgb0000](/datasets/md/24.md#spatial-transcriptomics-breast-zmc3wuv6hni0cmgb0000), [spatial-transcriptomics-breast-e2jkdtifcwv0rkf40000](/datasets/md/86.md#spatial-transcriptomics-breast-e2jkdtifcwv0rkf40000), [spatial-transcriptomics-breast-famsko92erhdhbbt0000](/datasets/md/d2.md#spatial-transcriptomics-breast-famsko92erhdhbbt0000), [spatial-transcriptomics-breast-rssm0bzue8dr2vp00000](/datasets/md/4b.md#spatial-transcriptomics-breast-rssm0bzue8dr2vp00000), [spatial-transcriptomics-breast-finclgkv8kxd6o5o0000](/datasets/md/44.md#spatial-transcriptomics-breast-finclgkv8kxd6o5o0000), [spatial-transcriptomics-breast-kvd3h9ozmhtv6d580000](/datasets/md/5a.md#spatial-transcriptomics-breast-kvd3h9ozmhtv6d580000), [spatial-transcriptomics-breast-jle0bwxjuv2r4lzv0000](/datasets/md/cb.md#spatial-transcriptomics-breast-jle0bwxjuv2r4lzv0000), [spatial-transcriptomics-brain-wzr69bumm0blcmnu0000](/datasets/md/b1.md#spatial-transcriptomics-brain-wzr69bumm0blcmnu0000), [spatial-transcriptomics-breast-puljc0eusbbtcezf0000](/datasets/md/f9.md#spatial-transcriptomics-breast-puljc0eusbbtcezf0000), [spatial-transcriptomics-breast-kxazfbe4wheklh2q0000](/datasets/md/e3.md#spatial-transcriptomics-breast-kxazfbe4wheklh2q0000), [spatial-transcriptomics-breast-femgtddolz5qqg5e0000](/datasets/md/1d.md#spatial-transcriptomics-breast-femgtddolz5qqg5e0000), [spatial-transcriptomics-breast-ebmmxjnqegmilx5d0000](/datasets/md/13.md#spatial-transcriptomics-breast-ebmmxjnqegmilx5d0000), [spatial-transcriptomics-breast-djvm9iswdzqgzcjf0000](/datasets/md/54.md#spatial-transcriptomics-breast-djvm9iswdzqgzcjf0000), [spatial-transcriptomics-breast-srmq6uryrwryhq0e0000](/datasets/md/54.md#spatial-transcriptomics-breast-srmq6uryrwryhq0e0000), [spatial-transcriptomics-breast-t2boc79axodmcqmh0000](/datasets/md/1b.md#spatial-transcriptomics-breast-t2boc79axodmcqmh0000), [spatial-transcriptomics-breast-ihl3vkzsbpqlu2ud0000](/datasets/md/d2.md#spatial-transcriptomics-breast-ihl3vkzsbpqlu2ud0000), [spatial-transcriptomics-breast-x6wngqbdmp7q6zti0000](/datasets/md/b8.md#spatial-transcriptomics-breast-x6wngqbdmp7q6zti0000), [spatial-transcriptomics-breast-vwg7nkhryt7vcygl0000](/datasets/md/7a.md#spatial-transcriptomics-breast-vwg7nkhryt7vcygl0000), [spatial-transcriptomics-brain-e23cgzczackrde2r0000](/datasets/md/73.md#spatial-transcriptomics-brain-e23cgzczackrde2r0000), [spatial-transcriptomics-breast-uai4ug1dy4gzvu4l0000](/datasets/md/e0.md#spatial-transcriptomics-breast-uai4ug1dy4gzvu4l0000), [spatial-transcriptomics-breast-jrltooudojrwjwyd0000](/datasets/md/3e.md#spatial-transcriptomics-breast-jrltooudojrwjwyd0000), [spatial-transcriptomics-breast-ry80ctonryuxosjo0000](/datasets/md/b9.md#spatial-transcriptomics-breast-ry80ctonryuxosjo0000), [spatial-transcriptomics-breast-shys7jvacmj6rzzp0000](/datasets/md/42.md#spatial-transcriptomics-breast-shys7jvacmj6rzzp0000), [spatial-transcriptomics-breast-uiqxjzsgf2vnw4jp0000](/datasets/md/06.md#spatial-transcriptomics-breast-uiqxjzsgf2vnw4jp0000), [spatial-transcriptomics-breast-vddzzks2bj5yq3bd0000](/datasets/md/85.md#spatial-transcriptomics-breast-vddzzks2bj5yq3bd0000), [spatial-transcriptomics-breast-sx7hcepw8cxreei40000](/datasets/md/33.md#spatial-transcriptomics-breast-sx7hcepw8cxreei40000), [spatial-transcriptomics-breast-twlvbxrtjoy6clhj0000](/datasets/md/66.md#spatial-transcriptomics-breast-twlvbxrtjoy6clhj0000), [spatial-transcriptomics-breast-vtve4hork6cjbpvc0000](/datasets/md/c3.md#spatial-transcriptomics-breast-vtve4hork6cjbpvc0000), [spatial-transcriptomics-brain-ma54upzdoyxkb2pf0000](/datasets/md/32.md#spatial-transcriptomics-brain-ma54upzdoyxkb2pf0000), [spatial-transcriptomics-breast-x9fouaexgyeiveug0000](/datasets/md/f8.md#spatial-transcriptomics-breast-x9fouaexgyeiveug0000), [spatial-transcriptomics-breast-4u9phgkxkiouvn2i0000](/datasets/md/09.md#spatial-transcriptomics-breast-4u9phgkxkiouvn2i0000), [spatial-transcriptomics-brain-nvaovlbqbd5dz2ky0000](/datasets/md/96.md#spatial-transcriptomics-brain-nvaovlbqbd5dz2ky0000), [spatial-transcriptomics-breast-5kcsryiysqivqtyl0000](/datasets/md/e4.md#spatial-transcriptomics-breast-5kcsryiysqivqtyl0000)

<a id="geo-gse181300"></a>
## Visium Analysis of head and neck squamous carcinoma (HNSCC) spatial transcriptome evolution

- Page: /collections/geo-gse181300/
- Kind: comparison
- Datasets: 8
- Reference: PMID:36002186
- Design: 10X Visium Spatial transcriptome Sequencing of HNSCC pateint tumor in different part
- Members: [visium-spatial-gene-expression-craniocervical-region-xmpljq3xnx5sbcxr0000](/datasets/md/a6.md#visium-spatial-gene-expression-craniocervical-region-xmpljq3xnx5sbcxr0000), [visium-spatial-gene-expression-craniocervical-region-itovb0qzqqon31cd0000](/datasets/md/4a.md#visium-spatial-gene-expression-craniocervical-region-itovb0qzqqon31cd0000), [visium-spatial-gene-expression-craniocervical-region-7wk26bflnjxowk3l0000](/datasets/md/e1.md#visium-spatial-gene-expression-craniocervical-region-7wk26bflnjxowk3l0000), [visium-spatial-gene-expression-craniocervical-region-pfzfvhzcbswmbpjy0000](/datasets/md/3e.md#visium-spatial-gene-expression-craniocervical-region-pfzfvhzcbswmbpjy0000), [visium-spatial-gene-expression-craniocervical-region-wiq35qdkkhgkfqd50000](/datasets/md/dc.md#visium-spatial-gene-expression-craniocervical-region-wiq35qdkkhgkfqd50000), [visium-spatial-gene-expression-craniocervical-region-espbdt9uwtd5oe8b0000](/datasets/md/08.md#visium-spatial-gene-expression-craniocervical-region-espbdt9uwtd5oe8b0000), [visium-spatial-gene-expression-craniocervical-region-kdztowevfnswh79o0000](/datasets/md/d1.md#visium-spatial-gene-expression-craniocervical-region-kdztowevfnswh79o0000), [visium-spatial-gene-expression-craniocervical-region-rjdstlqplnm8l2x00000](/datasets/md/98.md#visium-spatial-gene-expression-craniocervical-region-rjdstlqplnm8l2x00000)

<a id="geo-gse192741"></a>
## Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches (spatial)

- Page: /collections/geo-gse192741/
- Kind: comparison
- Datasets: 15
- Reference: PMID:35021063
- Design: Single cell RNA Seq = Liver CD45+ and CD45- cells derived from mice fed a standard diet (SD) or western diet (WD; fat, cholesterol and sugar). Liver CD45+ and CD45- cells derived from healthy and obese humans. 10 Visium Spatial Seq = mouse StSt liver, mouse StSt capsule, mouse NAFLD liver,  human non-steatotic liver, human steatotic liver.
- Members: [visium-spatial-gene-expression-liver-vj22wede0cnriz0j0000](/datasets/md/f8.md#visium-spatial-gene-expression-liver-vj22wede0cnriz0j0000), [visium-spatial-gene-expression-liver-z2c742siwhspmpg30000](/datasets/md/1a.md#visium-spatial-gene-expression-liver-z2c742siwhspmpg30000), [visium-spatial-gene-expression-liver-vcbak3aroxnb4pfc0000](/datasets/md/9c.md#visium-spatial-gene-expression-liver-vcbak3aroxnb4pfc0000), [visium-spatial-gene-expression-liver-4lhhiwcn7qnurgfv0000](/datasets/md/ec.md#visium-spatial-gene-expression-liver-4lhhiwcn7qnurgfv0000), [visium-spatial-gene-expression-liver-j3wcdfwdjtlwmoqm0000](/datasets/md/8b.md#visium-spatial-gene-expression-liver-j3wcdfwdjtlwmoqm0000), [visium-spatial-gene-expression-liver-opysad9iq9ex1xdp0000](/datasets/md/0e.md#visium-spatial-gene-expression-liver-opysad9iq9ex1xdp0000), [visium-spatial-gene-expression-liver-fis76wkcv0aje8q40000](/datasets/md/82.md#visium-spatial-gene-expression-liver-fis76wkcv0aje8q40000), [visium-spatial-gene-expression-liver-hw59xg7z35w9vxh20000](/datasets/md/d6.md#visium-spatial-gene-expression-liver-hw59xg7z35w9vxh20000), [visium-spatial-gene-expression-liver-ciohmrnbavebsarz0000](/datasets/md/fd.md#visium-spatial-gene-expression-liver-ciohmrnbavebsarz0000), [visium-spatial-gene-expression-capsule-of-liver-9d9yey1kww2iyoxr0000](/datasets/md/b8.md#visium-spatial-gene-expression-capsule-of-liver-9d9yey1kww2iyoxr0000), [visium-spatial-gene-expression-liver-ar0t0puxqhnkrsma0000](/datasets/md/5b.md#visium-spatial-gene-expression-liver-ar0t0puxqhnkrsma0000), [visium-spatial-gene-expression-liver-m1v5tkxizvklnfs40000](/datasets/md/a6.md#visium-spatial-gene-expression-liver-m1v5tkxizvklnfs40000), [visium-spatial-gene-expression-liver-iys320a4i6zqbzlb0000](/datasets/md/23.md#visium-spatial-gene-expression-liver-iys320a4i6zqbzlb0000), [visium-spatial-gene-expression-liver-1jad3lrjefruavny0000](/datasets/md/01.md#visium-spatial-gene-expression-liver-1jad3lrjefruavny0000), [visium-spatial-gene-expression-liver-3d8xaxjmvcyp6iv30000](/datasets/md/7d.md#visium-spatial-gene-expression-liver-3d8xaxjmvcyp6iv30000)

<a id="geo-gse195598"></a>
## Spatial Transcriptomics of Joint-Draining Popliteal Lymph Nodes from Wild-type and TNF-Tg Mice with Early and Advanced Inflammatory-Erosive Arthritis

- Page: /collections/geo-gse195598/
- Kind: time course
- Datasets: 4
- Reference: PMID:37691918
- Design: A single Gene Expression Slide (10X Genomics) was used to evaluate PLNs for spatial transcriptomics with 3 different groups represented on the 4 capture areas: 1) 5.5-month-old wild-type (n = 5 mice, 10 PLNs), 2) 5.5-month-old TNF-Tg with Early arthritis (n = 3 mice, 6 PLNs), and 8.5-9-month-old TNF-Tg with Advanced arthritis (2 replicates with n = 3 mice, 6 PLNs per replicate). Only male mice were used for the study due to early mortality of TNF-Tg females, and all mice were on a C57BL/6 genetic background. Standard protocols from the Visium Methanol Fixation and H&E Staining Guide and Visium Spatial Gene Expression Kit (10X Genomics) were performed.
- Members: [visium-spatial-gene-expression-popliteal-lymph-node-5ozaapexsbfefvrq0000](/datasets/md/98.md#visium-spatial-gene-expression-popliteal-lymph-node-5ozaapexsbfefvrq0000), [visium-spatial-gene-expression-popliteal-lymph-node-r3mbgnsxma8mifcn0000](/datasets/md/3e.md#visium-spatial-gene-expression-popliteal-lymph-node-r3mbgnsxma8mifcn0000), [visium-spatial-gene-expression-popliteal-lymph-node-d4kqpoemmsutzod20000](/datasets/md/7a.md#visium-spatial-gene-expression-popliteal-lymph-node-d4kqpoemmsutzod20000), [visium-spatial-gene-expression-popliteal-lymph-node-q7sdzowgtv0pz6ko0000](/datasets/md/67.md#visium-spatial-gene-expression-popliteal-lymph-node-q7sdzowgtv0pz6ko0000)

<a id="geo-gse207592"></a>
## A cellular hierarchy in melanoma uncouples growth and metastasis

- Page: /collections/geo-gse207592/
- Kind: other
- Datasets: 2
- Reference: PMID:36131018
- Design: scRNA-Seq and bulk RNA-Seq
- Members: [visium-spatial-gene-expression-skin-of-body-pcx4x6clum5otwqw0000](/datasets/md/f9.md#visium-spatial-gene-expression-skin-of-body-pcx4x6clum5otwqw0000), [visium-spatial-gene-expression-skin-of-body-2c5l0csuesranhcx0000](/datasets/md/64.md#visium-spatial-gene-expression-skin-of-body-2c5l0csuesranhcx0000)

<a id="geo-gse218759"></a>
## Cardiac reprogramming and Gata4 overexpression reduce fibrosis and improve diastolic dysfunction in heart failure with preserved ejection fraction [Visium]

- Page: /collections/geo-gse218759/
- Kind: comparison
- Datasets: 3
- Reference: PMID:39673349
- Design: Hearts were harvested 15 weeks after the start of the experiment from three groups (Ctrl, Ctrl_HF, and TTg_HF) for Visium.
- Members: [visium-spatial-gene-expression-heart-lmg5vibdbpw9a1vs0000](/datasets/md/9d.md#visium-spatial-gene-expression-heart-lmg5vibdbpw9a1vs0000), [visium-spatial-gene-expression-heart-rhdlgcpmlgmrfdfm0000](/datasets/md/43.md#visium-spatial-gene-expression-heart-rhdlgcpmlgmrfdfm0000), [visium-spatial-gene-expression-heart-mxsbtmogy8jfeix30000](/datasets/md/fd.md#visium-spatial-gene-expression-heart-mxsbtmogy8jfeix30000)

<a id="geo-gse228169"></a>
## Human Cortical Kidney Sections

- Page: /collections/geo-gse228169/
- Kind: other
- Datasets: 2
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE228169
- Design: Visium samples include 10 micron sections of human kidneys.
- Members: [visium-spatial-gene-expression-kidney-jgrcwo1rmubyhigb0000](/datasets/md/18.md#visium-spatial-gene-expression-kidney-jgrcwo1rmubyhigb0000), [visium-spatial-gene-expression-kidney-pkmzcqe2yt1h0l290000](/datasets/md/50.md#visium-spatial-gene-expression-kidney-pkmzcqe2yt1h0l290000)

<a id="geo-gse240715"></a>
## Spatial transcriptomics map of the embryonic mouse brain: a tool to explore neurogenesis

- Page: /collections/geo-gse240715/
- Kind: other
- Datasets: 4
- Reference: PMID:37855382
- Design: Four sections from four different WT mouse embryonic heads (stage E13.5) were extracted for spatial transcriptomics using the 10x Genomics Visium platform in order to identify areas of the embryonic brain with different cell lineages and maturation states at the peak of neurogenesis.
- Members: [visium-spatial-gene-expression-brain-j6ck95ifsxllpbsq0000](/datasets/md/42.md#visium-spatial-gene-expression-brain-j6ck95ifsxllpbsq0000), [visium-spatial-gene-expression-brain-de31tln6shlndhxm0000](/datasets/md/86.md#visium-spatial-gene-expression-brain-de31tln6shlndhxm0000), [visium-spatial-gene-expression-brain-wxx5buc2u5srxten0000](/datasets/md/f6.md#visium-spatial-gene-expression-brain-wxx5buc2u5srxten0000), [visium-spatial-gene-expression-brain-ftzkdnjdbyhky7is0000](/datasets/md/1c.md#visium-spatial-gene-expression-brain-ftzkdnjdbyhky7is0000)

<a id="geo-gse243022"></a>
## Cancer-associated Fibroblast Spatial Heterogeneity and EMILIN1 Expression in Cancer Stroma Modulate TGF-b Activity and CD8+ T-Cell Infiltration in Breast Cancer

- Page: /collections/geo-gse243022/
- Kind: other
- Datasets: 4
- Reference: PMID:38505604
- Design: Spatial gene expression analysis of 4 breast cancer samples of different HER2 and HR status was done with the Visium Spatial Gene Expression Reagent Kit (10x Genomics) following the manufacturer’s user guide.
- Members: [visium-spatial-gene-expression-breast-rhcfqyzjiesseufa0000](/datasets/md/0f.md#visium-spatial-gene-expression-breast-rhcfqyzjiesseufa0000), [visium-spatial-gene-expression-breast-hz8omuadvlc7eqro0000](/datasets/md/95.md#visium-spatial-gene-expression-breast-hz8omuadvlc7eqro0000), [visium-spatial-gene-expression-breast-ahpyohneqr6qyka50000](/datasets/md/74.md#visium-spatial-gene-expression-breast-ahpyohneqr6qyka50000), [visium-spatial-gene-expression-breast-iudexkgglmcinbfh0000](/datasets/md/42.md#visium-spatial-gene-expression-breast-iudexkgglmcinbfh0000)

<a id="geo-gse272833"></a>
## Spatial transcriptome analysis for squamous cell carcinoma arising from mature teratoma

- Page: /collections/geo-gse272833/
- Kind: replicates
- Datasets: 4
- Reference: PMID:39948701
- Design: Archival fresh-frozen samples of SCC-MT were obtained from the National Cancer Center Biobank and Nagoya University. We prepared four slices from three patients with SCC-MT. Spatial transcriptomics was performed using the Visium Spatial Gene Expression Reagent Kits (10x Genomics) according to the manufacturer’s instructions.
- Members: [visium-spatial-gene-expression-ovary-8zp9fvbftqnlmryy0000](/datasets/md/e1.md#visium-spatial-gene-expression-ovary-8zp9fvbftqnlmryy0000), [visium-spatial-gene-expression-ovary-puq0jrq4lazh73eq0000](/datasets/md/83.md#visium-spatial-gene-expression-ovary-puq0jrq4lazh73eq0000), [visium-spatial-gene-expression-ovary-r3tuewqhzrsxke380000](/datasets/md/13.md#visium-spatial-gene-expression-ovary-r3tuewqhzrsxke380000), [visium-spatial-gene-expression-ovary-onsrxx13x1kefb5j0000](/datasets/md/3a.md#visium-spatial-gene-expression-ovary-onsrxx13x1kefb5j0000)

<a id="geo-gse260847"></a>
## Neuromodulatory co-expression in cardiac vagal motor neurons of the Dorsal Motor Nucleus of the Vagus [spatial transcriptomics]

- Page: /collections/geo-gse260847/
- Kind: other
- Datasets: 8
- Reference: PMID:39171288
- Design: Adult male Sprague Dawley rat brainstem 10 µm sections evenly spaced 200 µm apart were put on 2 Visium slides (8 sections total). Permeabilization, barcoding, library construction, and sequencing were performed for each 50 µm barcoded spot. We did this throughout the extent of the brainstem including the DMV at the level of Area Postrema.
- Members: [visium-spatial-gene-expression-brainstem-s1fjcsibqcble58h0001](/datasets/md/a2.md#visium-spatial-gene-expression-brainstem-s1fjcsibqcble58h0001), [visium-spatial-gene-expression-brainstem-j7baswv6pbpu9sa10000](/datasets/md/69.md#visium-spatial-gene-expression-brainstem-j7baswv6pbpu9sa10000), [visium-spatial-gene-expression-brainstem-luqqkundaizbflvh0000](/datasets/md/0d.md#visium-spatial-gene-expression-brainstem-luqqkundaizbflvh0000), [visium-spatial-gene-expression-brainstem-s6c6wextobk7udch0000](/datasets/md/ba.md#visium-spatial-gene-expression-brainstem-s6c6wextobk7udch0000), [visium-spatial-gene-expression-brainstem-o77mdg71dtcwhgfm0000](/datasets/md/21.md#visium-spatial-gene-expression-brainstem-o77mdg71dtcwhgfm0000), [visium-spatial-gene-expression-brainstem-3yfntw578wizcqqu0000](/datasets/md/fa.md#visium-spatial-gene-expression-brainstem-3yfntw578wizcqqu0000), [visium-spatial-gene-expression-brainstem-zqjeynxhbsymjq1s0000](/datasets/md/83.md#visium-spatial-gene-expression-brainstem-zqjeynxhbsymjq1s0000), [visium-spatial-gene-expression-brainstem-v5gsgsfcbhqin0wz0000](/datasets/md/d6.md#visium-spatial-gene-expression-brainstem-v5gsgsfcbhqin0wz0000)

<a id="geo-gse267806"></a>
## Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Visium: Spatial transcriptomics]

- Page: /collections/geo-gse267806/
- Kind: other
- Datasets: 6
- Reference: PMID:38781959
- Design: Spatial transcritomics analyses were performed using Visium assays on scRNA-seq-matched FFPE samples (n=6 patients)  *************************************************************** Submitter states that missing raw files are due to patient privacy concerns. ***************************************************************
- Members: [visium-spatial-gene-expression-peritoneum-bgxa5ttp6h54nsw00000](/datasets/md/c8.md#visium-spatial-gene-expression-peritoneum-bgxa5ttp6h54nsw00000), [visium-spatial-gene-expression-peritoneum-ryyqssk5znctevfa0000](/datasets/md/4a.md#visium-spatial-gene-expression-peritoneum-ryyqssk5znctevfa0000), [visium-spatial-gene-expression-peritoneum-tytihv1ulnybd9rq0000](/datasets/md/6e.md#visium-spatial-gene-expression-peritoneum-tytihv1ulnybd9rq0000), [visium-spatial-gene-expression-peritoneum-2tlwyogeja84zrx00000](/datasets/md/89.md#visium-spatial-gene-expression-peritoneum-2tlwyogeja84zrx00000), [visium-spatial-gene-expression-peritoneum-mepn7tgume7r5mif0000](/datasets/md/25.md#visium-spatial-gene-expression-peritoneum-mepn7tgume7r5mif0000), [visium-spatial-gene-expression-peritoneum-njhelnll9sjioqda0000](/datasets/md/1c.md#visium-spatial-gene-expression-peritoneum-njhelnll9sjioqda0000)

<a id="geo-gse269543"></a>
## Multi-omics Analysis Revealing the Impact of Excessive Maternal Folate Supplementation on Offspring Brain Development [spatial transcriptome]

- Page: /collections/geo-gse269543/
- Kind: comparison
- Datasets: 4
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE269543
- Design: Adult female mice (8-12 weeks old) were randomly assigned to either a control folic acid (FA) diet (2mg/kg) or an excessive FA diet (20mg/kg) for two weeks before mating with males. These diets were maintained throughout pregnancy and lactation. Pups were harvested on postnatal day 21 (P21). To profile spatial transcriptome, the mouse brains were freshly isolated to prepare FFPE tissue blocks, then coronally sectioned and placed onto the Visium slides for Visium Spatial Gene Expression library preparation. To simultaneously profile the transcriptome and chromatin accessibility at single cell resolution, hippocampus tissues were micro-dissected from the freshly isolated mouse brain tissues for single nuclei suspension preparation and subsequently loaded onto the Chromium iX using the single nucleus multiome kit from 10x genomics. Single nucleus RNA-seq (snRNA-seq) and single nucleus ATAC-seq (snATAC-seq) libraries were simultaneously constructed from the same nucleus following the manufactures' instructions.
- Members: [visium-spatial-gene-expression-brain-qo4kgfyyr3a0j3uw0001](/datasets/md/b1.md#visium-spatial-gene-expression-brain-qo4kgfyyr3a0j3uw0001), [visium-spatial-gene-expression-brain-uxm5ib3suuqv0f3o0000](/datasets/md/89.md#visium-spatial-gene-expression-brain-uxm5ib3suuqv0f3o0000), [visium-spatial-gene-expression-brain-yixaklbb1mhfp7h50000](/datasets/md/21.md#visium-spatial-gene-expression-brain-yixaklbb1mhfp7h50000), [visium-spatial-gene-expression-brain-7jczxxglw7jrjibs0000](/datasets/md/ce.md#visium-spatial-gene-expression-brain-7jczxxglw7jrjibs0000)

<a id="geo-gse269875"></a>
## Spatial transcriptomics unveils novel potential disease mechanisms associated with the microenvironment in Multiple Myeloma

- Page: /collections/geo-gse269875/
- Kind: comparison
- Datasets: 14
- Reference: PMID:41954292
- Design: This study includes spatial transcriptomics analysis of bone marrow samples from healthy mice (YFPcγ1 model) and Multiple Myeloma (MM) mice (MIcγ1 model), as well as human bone marrow biopsies from healthy individuals and MM patients. The analysis aims to compare the spatial and transcriptional profiles of healthy and diseased bone marrow, focusing on cell type composition and specific transcriptional programs associated with MM pathogenesis. No external treatments were applied, and samples were processed using 10x Genomics Visium Spatial Gene Expression technology.
- Members: [visium-spatial-gene-expression-bone-marrow-46mpcqftde6ggm4g0000](/datasets/md/31.md#visium-spatial-gene-expression-bone-marrow-46mpcqftde6ggm4g0000), [visium-spatial-gene-expression-bone-marrow-lzikjakdxglub77e0000](/datasets/md/2b.md#visium-spatial-gene-expression-bone-marrow-lzikjakdxglub77e0000), [visium-spatial-gene-expression-bone-marrow-k0ymwzqlt8bv2zoj0000](/datasets/md/83.md#visium-spatial-gene-expression-bone-marrow-k0ymwzqlt8bv2zoj0000), [visium-spatial-gene-expression-bone-marrow-bhn0jwjsgkjou6fa0000](/datasets/md/e3.md#visium-spatial-gene-expression-bone-marrow-bhn0jwjsgkjou6fa0000), [visium-spatial-gene-expression-bone-marrow-vob6fiqsun9aafua0001](/datasets/md/d2.md#visium-spatial-gene-expression-bone-marrow-vob6fiqsun9aafua0001), [visium-spatial-gene-expression-bone-marrow-qggqbqbwclqctypt0000](/datasets/md/8f.md#visium-spatial-gene-expression-bone-marrow-qggqbqbwclqctypt0000), [visium-spatial-gene-expression-bone-marrow-rsoulldrlqeswv5b0000](/datasets/md/f0.md#visium-spatial-gene-expression-bone-marrow-rsoulldrlqeswv5b0000), [visium-spatial-gene-expression-bone-marrow-bqnsqgypx3ilhmjx0000](/datasets/md/87.md#visium-spatial-gene-expression-bone-marrow-bqnsqgypx3ilhmjx0000), [visium-spatial-gene-expression-bone-marrow-5ks5o1oqfjxyrwos0000](/datasets/md/c0.md#visium-spatial-gene-expression-bone-marrow-5ks5o1oqfjxyrwos0000), [visium-spatial-gene-expression-bone-marrow-wa2aylrkbtwnsyvd0000](/datasets/md/e9.md#visium-spatial-gene-expression-bone-marrow-wa2aylrkbtwnsyvd0000), [visium-spatial-gene-expression-bone-marrow-wvexpdgx9kgv0frr0000](/datasets/md/d0.md#visium-spatial-gene-expression-bone-marrow-wvexpdgx9kgv0frr0000), [visium-spatial-gene-expression-bone-marrow-8b3agwk3sl8xjhww0000](/datasets/md/e2.md#visium-spatial-gene-expression-bone-marrow-8b3agwk3sl8xjhww0000), [visium-spatial-gene-expression-bone-marrow-vwn9damlndl2rdv30000](/datasets/md/60.md#visium-spatial-gene-expression-bone-marrow-vwn9damlndl2rdv30000), [visium-spatial-gene-expression-bone-marrow-drlqsrudpj9mlb6z0000](/datasets/md/18.md#visium-spatial-gene-expression-bone-marrow-drlqsrudpj9mlb6z0000)

<a id="geo-gse271422"></a>
## spatialGE is a User-Friendly Web Application that Facilitates Spatial Transcriptomics Data Analysis

- Page: /collections/geo-gse271422/
- Kind: other
- Datasets: 2
- Reference: PMID:39636739
- Design: This study presents three brain melanoma metastasis samples from three patients profiled with Visium.
- Members: [visium-spatial-gene-expression-brain-5ajlrm8shjijqlyq0000](/datasets/md/90.md#visium-spatial-gene-expression-brain-5ajlrm8shjijqlyq0000), [visium-spatial-gene-expression-brain-bo2o5ymaonnev9zh0000](/datasets/md/de.md#visium-spatial-gene-expression-brain-bo2o5ymaonnev9zh0000)

<a id="geo-gse275144"></a>
## Creeping fat-derived mechanosensitive fibroblasts drive intestinal fibrosis in Crohn’s disease strictures [Visium]

- Page: /collections/geo-gse275144/
- Kind: other
- Datasets: 2
- Reference: PMID:40967215
- Design: Spatial transcriptomics of hashed human bowel and mesenteric adipose tissue cells using the 10X Genomics platform.
- Members: [visium-spatial-gene-expression-intestine-opc2oi2unpxvvfub0000](/datasets/md/3f.md#visium-spatial-gene-expression-intestine-opc2oi2unpxvvfub0000), [visium-spatial-gene-expression-intestine-bmbwcccn1iorydum0000](/datasets/md/50.md#visium-spatial-gene-expression-intestine-bmbwcccn1iorydum0000)

<a id="geo-gse286184"></a>
## Single-nucleus transcriptomic landscape of human glomerular diseases [Xenium]

- Page: /collections/geo-gse286184/
- Kind: comparison
- Datasets: 21
- Reference: PMID:42761496
- Design: Xenium analysis was performed using biopsy acquired kidney tissues from glomerular disease patients at diagnosis. (Abbreviations)  DKD : Diabetic kidney disease; IgAN : Ig A Nephropathy; MCD : Minimal change disease; MN : Membranous Nephropathy
- Members: [10x-xenium-kidney-svywy3ftqngttmrp0000](/datasets/md/4e.md#10x-xenium-kidney-svywy3ftqngttmrp0000), [10x-xenium-kidney-sgzxtkw1wxuz7yfq0000](/datasets/md/7e.md#10x-xenium-kidney-sgzxtkw1wxuz7yfq0000), [10x-xenium-kidney-rxmxbcegivy7cunl0000](/datasets/md/ac.md#10x-xenium-kidney-rxmxbcegivy7cunl0000), [10x-xenium-kidney-tpueopbx6bl9xswv0000](/datasets/md/15.md#10x-xenium-kidney-tpueopbx6bl9xswv0000), [10x-xenium-kidney-0hvcenilqm3ubbex0000](/datasets/md/55.md#10x-xenium-kidney-0hvcenilqm3ubbex0000), [10x-xenium-kidney-9echpci2byjexpmm0000](/datasets/md/08.md#10x-xenium-kidney-9echpci2byjexpmm0000), [10x-xenium-kidney-f5aa0qofwu5kqsqp0000](/datasets/md/df.md#10x-xenium-kidney-f5aa0qofwu5kqsqp0000), [10x-xenium-kidney-e5f35nj4oq4ngo2j0000](/datasets/md/d6.md#10x-xenium-kidney-e5f35nj4oq4ngo2j0000), [10x-xenium-kidney-wuuicn3yjz9v0chy0000](/datasets/md/af.md#10x-xenium-kidney-wuuicn3yjz9v0chy0000), [10x-xenium-kidney-nhyd5dfysygnrkdu0000](/datasets/md/ba.md#10x-xenium-kidney-nhyd5dfysygnrkdu0000), [10x-xenium-kidney-xtduriwbektaruti0000](/datasets/md/dd.md#10x-xenium-kidney-xtduriwbektaruti0000), [10x-xenium-kidney-h7x7fqqjo0v9xx8t0000](/datasets/md/c6.md#10x-xenium-kidney-h7x7fqqjo0v9xx8t0000), [10x-xenium-kidney-7cvm04sitwdiuccp0000](/datasets/md/12.md#10x-xenium-kidney-7cvm04sitwdiuccp0000), [10x-xenium-kidney-l63qbpei1jb14kum0000](/datasets/md/8f.md#10x-xenium-kidney-l63qbpei1jb14kum0000), [10x-xenium-kidney-grl6vmd9cqix9kwy0000](/datasets/md/b8.md#10x-xenium-kidney-grl6vmd9cqix9kwy0000), [10x-xenium-kidney-givmm2g196wm29fc0000](/datasets/md/8d.md#10x-xenium-kidney-givmm2g196wm29fc0000), [10x-xenium-kidney-4aa7meigbu5btyg60000](/datasets/md/df.md#10x-xenium-kidney-4aa7meigbu5btyg60000), [10x-xenium-kidney-jvoldq0g9hrfr5090000](/datasets/md/b1.md#10x-xenium-kidney-jvoldq0g9hrfr5090000), [10x-xenium-kidney-xr5r5oiei5vc5rw40000](/datasets/md/1b.md#10x-xenium-kidney-xr5r5oiei5vc5rw40000), [10x-xenium-kidney-kzevjchn2kwfs9w70000](/datasets/md/e7.md#10x-xenium-kidney-kzevjchn2kwfs9w70000), [10x-xenium-kidney-qhwlkupiwgrewxul0000](/datasets/md/6a.md#10x-xenium-kidney-qhwlkupiwgrewxul0000)

<a id="geo-gse289745"></a>
## Cancer-induced nerve injury promotes resistance to anti-PD-1 therapy [Spatial Transcriptomics]

- Page: /collections/geo-gse289745/
- Kind: other
- Datasets: 11
- Reference: PMID:40836096
- Design: Cutaneous squamous cell carcinoma samples were processed for spatial transcriptome analyses using the Visium (10X Genomics. We conducted transcriptional phenotyping of each sequenced tissue section based on the molecular characteristics of tumor-associated nerves and tumor immune infiltrate, utilizing gene signatures obtained from the literature. Nerves were evaluated according to the Cancer-Induced Nerve Injury (CINI) signature, which included the following genes: TAGAP, KCNJ8, COL1A1, PECAM1, TMEM119, ATF3, JUN, KLF6, NOCT, LMO7, CSF1, ENTPD1, UCHL1, PINK1, BHLHE41, ITGAM, CHL1, SNCA, SCPEP1, and VEGFA. The immune infiltrate was assessed using two signatures: Anti-tumoral Immunity (CD8A, PRF1, GZMB, IL12A, IFNG, IRF8, CD86, NOS2, TNF, and IL2) and Immunosuppression (IDO1, CTLA4, FOXP3, IL10, IL6, CD163, MSR1, MRC1, PDCD1, PDCD1LG2, and CD274). The strength of the correlation between the CINI and the immune signatures was evaluated.
- Members: [visium-spatial-gene-expression-skin-of-body-yfausewq8l75jwuh0000](/datasets/md/08.md#visium-spatial-gene-expression-skin-of-body-yfausewq8l75jwuh0000), [visium-spatial-gene-expression-skin-of-body-4180wdxm8tfqpkha0000](/datasets/md/62.md#visium-spatial-gene-expression-skin-of-body-4180wdxm8tfqpkha0000), [visium-spatial-gene-expression-skin-of-body-7ftbloyrhc7dlylf0000](/datasets/md/45.md#visium-spatial-gene-expression-skin-of-body-7ftbloyrhc7dlylf0000), [visium-spatial-gene-expression-skin-of-body-xvle3hycbg6kf7fn0000](/datasets/md/b1.md#visium-spatial-gene-expression-skin-of-body-xvle3hycbg6kf7fn0000), [visium-spatial-gene-expression-skin-of-body-ywgxibgu5kxhy44e0000](/datasets/md/d3.md#visium-spatial-gene-expression-skin-of-body-ywgxibgu5kxhy44e0000), [visium-spatial-gene-expression-skin-of-body-yt0orht9ktr8cfjh0000](/datasets/md/1a.md#visium-spatial-gene-expression-skin-of-body-yt0orht9ktr8cfjh0000), [visium-spatial-gene-expression-skin-of-body-iuud0pdldvgcp64v0000](/datasets/md/9e.md#visium-spatial-gene-expression-skin-of-body-iuud0pdldvgcp64v0000), [visium-spatial-gene-expression-skin-of-body-8zctobcdm7xczvsc0000](/datasets/md/a5.md#visium-spatial-gene-expression-skin-of-body-8zctobcdm7xczvsc0000), [visium-spatial-gene-expression-skin-of-body-w2pa2jrsjtgnwxwc0000](/datasets/md/52.md#visium-spatial-gene-expression-skin-of-body-w2pa2jrsjtgnwxwc0000), [visium-spatial-gene-expression-skin-of-body-hqyhaldggzntcsp70000](/datasets/md/72.md#visium-spatial-gene-expression-skin-of-body-hqyhaldggzntcsp70000), [visium-spatial-gene-expression-skin-of-body-ztdiwq7yrsgi9sni0000](/datasets/md/84.md#visium-spatial-gene-expression-skin-of-body-ztdiwq7yrsgi9sni0000)

<a id="geo-gse294006"></a>
## Hypoxia shapes both therapeutic response and resistance in metastatic clear cell renal cell carcinoma [Spatial Transcriptomics]

- Page: /collections/geo-gse294006/
- Kind: other
- Datasets: 3
- Reference: PMID:42242232
- Design: FFPE sections from advanced ccRCC tumors surgically resected following various tyrosine kinase inhibitor (TKI) or immune checkpoint blockade (ICB) therapy combinations, were analysed by Visium (v1) spatial transcriptomics. 
- Members: [visium-spatial-gene-expression-kidney-mg8o3jx0ruxriyei0000](/datasets/md/f2.md#visium-spatial-gene-expression-kidney-mg8o3jx0ruxriyei0000), [visium-spatial-gene-expression-kidney-j7elcvhqib2egruf0000](/datasets/md/1e.md#visium-spatial-gene-expression-kidney-j7elcvhqib2egruf0000), [visium-spatial-gene-expression-kidney-bhnum8qtlyduhm1e0000](/datasets/md/6c.md#visium-spatial-gene-expression-kidney-bhnum8qtlyduhm1e0000)

<a id="geo-gse296975"></a>
## Defining Cellular Diversity at the Swine Maternal-Fetal Interface Using Spatial Transcriptomics and Organoids [MFI017_Visium]

- Page: /collections/geo-gse296975/
- Kind: other
- Datasets: 4
- Reference: PMID:40875599
- Design: Visium Spatial Transcriptomics was performed on porcine maternal-fetal interfaces. Spaceranger v2.1.1 was utilized for analysis sTO were grown to high density and total RNA was collected and subjected to bulk-RNAseq. sTO were grown to high density, digested into a single cell suspension, and subjected to single cell rna-sequencing via 10X genomics.
- Members: [visium-spatial-gene-expression-placenta-kyhafzhibu8bmerq0000](/datasets/md/8a.md#visium-spatial-gene-expression-placenta-kyhafzhibu8bmerq0000), [visium-spatial-gene-expression-placenta-an7k5nzdiopcrf7t0000](/datasets/md/28.md#visium-spatial-gene-expression-placenta-an7k5nzdiopcrf7t0000), [visium-spatial-gene-expression-placenta-egvom5gq2tyb07l40000](/datasets/md/37.md#visium-spatial-gene-expression-placenta-egvom5gq2tyb07l40000), [visium-spatial-gene-expression-placenta-ranhhzb932i9wjux0000](/datasets/md/9b.md#visium-spatial-gene-expression-placenta-ranhhzb932i9wjux0000)

<a id="geo-gse297081"></a>
## Inhibition of ACLY enhances tumor immunogenicity and resolves MASH-driven HCC

- Page: /collections/geo-gse297081/
- Kind: comparison
- Datasets: 4
- Reference: PMID:40739358
- Design: Two liver samples from WD-DEN HCC mouse models [WT (n=1) or Acly KO (n=1) mice] were used for spatial transcriptomic analysis. Two liver samples from WD-CCl4 HCC mouse models [Vehicle (n=1), or EVT0185 (100mg/kg) (n=1) treated mice] were used for spatial transcriptomic analysis.
- Members: [visium-spatial-gene-expression-liver-mne10oqvbr2pmb020000](/datasets/md/a1.md#visium-spatial-gene-expression-liver-mne10oqvbr2pmb020000), [visium-spatial-gene-expression-liver-oejibsepsa2iczj40000](/datasets/md/17.md#visium-spatial-gene-expression-liver-oejibsepsa2iczj40000), [visium-spatial-gene-expression-liver-tcfxnqyxxzjl9vzb0000](/datasets/md/7a.md#visium-spatial-gene-expression-liver-tcfxnqyxxzjl9vzb0000), [visium-spatial-gene-expression-liver-jrkhllbw5sd3wmyz0000](/datasets/md/8e.md#visium-spatial-gene-expression-liver-jrkhllbw5sd3wmyz0000)

<a id="geo-gse299610"></a>
## Subclinical Neonatal HSV-1 Infection Triggers Immune Responses and Modulates Neurological Pathways Leading to Long-Term Sequelae [Visium]

- Page: /collections/geo-gse299610/
- Kind: comparison
- Datasets: 2
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE299610
- Design: Visium spatial transcriptomics of brain sample, mock infection and 100 PFU subclinical HSV-1
- Members: [visium-spatial-gene-expression-brain-z37jb4wu79e6twse0000](/datasets/md/4f.md#visium-spatial-gene-expression-brain-z37jb4wu79e6twse0000), [visium-spatial-gene-expression-brain-dq56sv6eylpeawru0000](/datasets/md/f2.md#visium-spatial-gene-expression-brain-dq56sv6eylpeawru0000)

<a id="geo-gse300895"></a>
## High resolution spatial trancrioptomics combined with deep learning-based image segmentation enables single-cell spatial profiling of archival FFPE kidney tissue from patients with idiopathic nephrotic syndrome

- Page: /collections/geo-gse300895/
- Kind: comparison
- Datasets: 3
- Design: Archival FFPE kidney biopsies from three patients with different manfistations of idiopathic nephrotic syndrome (SSNS, FR/SDNS, FSGS) were prepared for Visium HD WT Panel Gene Expression. Deep lerning-based image segmentation of nuclei and custom binning was used to reconstruct single-nucleus level spatial datasets. ** Raw data not provided due to patient privacy concerns**  *************************************************************** Raw files for human/patient samples were not submitted to GEO due to concerns about submitting personally identifiable sequence data for open access. ***************************************************************
- Members: [visium-hd-kidney-tithpwoipva4s5xj0000](/datasets/md/db.md#visium-hd-kidney-tithpwoipva4s5xj0000), [visium-hd-kidney-o93vzi69x8alfu9m0000](/datasets/md/ef.md#visium-hd-kidney-o93vzi69x8alfu9m0000), [visium-hd-kidney-kz0i4zsaipd8ivfr0001](/datasets/md/52.md#visium-hd-kidney-kz0i4zsaipd8ivfr0001)

<a id="geo-gse312204"></a>
## Clonal biases dictate availability of colonic cancer driver mutations for transformation

- Page: /collections/geo-gse312204/
- Kind: other
- Datasets: 20
- Reference: PMID:41991531
- Design: Human FFPE samples of normal colon tissue with previously identified cancer driver mutations (based on targeted-amplicon sequencing) were subjected to 10X Visium. Targeted-amplicon sequecing had allowed the spatial localisation of the mutant areas, so only these parts of the tissue, togetther with some adjacent normal, were subjected to sequencing.
- Members: [visium-spatial-gene-expression-colon-lylmjo0zujschrft0001](/datasets/md/ec.md#visium-spatial-gene-expression-colon-lylmjo0zujschrft0001), [visium-spatial-gene-expression-colon-oxs8e80rkmtec58p0000](/datasets/md/9e.md#visium-spatial-gene-expression-colon-oxs8e80rkmtec58p0000), [visium-spatial-gene-expression-colon-vahi5zx2kd4z4xo70000](/datasets/md/c8.md#visium-spatial-gene-expression-colon-vahi5zx2kd4z4xo70000), [visium-spatial-gene-expression-colon-jghmzmkvmnemc4fc0000](/datasets/md/76.md#visium-spatial-gene-expression-colon-jghmzmkvmnemc4fc0000), [visium-spatial-gene-expression-colon-nlnqtxrjahzd4qgg0000](/datasets/md/5c.md#visium-spatial-gene-expression-colon-nlnqtxrjahzd4qgg0000), [visium-spatial-gene-expression-colon-cvzmuppy4jowqoln0000](/datasets/md/68.md#visium-spatial-gene-expression-colon-cvzmuppy4jowqoln0000), [visium-spatial-gene-expression-colon-v61fmjpijmfzpcrh0000](/datasets/md/77.md#visium-spatial-gene-expression-colon-v61fmjpijmfzpcrh0000), [visium-spatial-gene-expression-colon-q8ie0hqetmmzdapu0000](/datasets/md/62.md#visium-spatial-gene-expression-colon-q8ie0hqetmmzdapu0000), [visium-spatial-gene-expression-colon-bcfco58jpi1kgpxv0000](/datasets/md/9a.md#visium-spatial-gene-expression-colon-bcfco58jpi1kgpxv0000), [visium-spatial-gene-expression-colon-5k9x6zgpxgcqcvm90000](/datasets/md/8b.md#visium-spatial-gene-expression-colon-5k9x6zgpxgcqcvm90000), [visium-spatial-gene-expression-colon-abwx6fwqvahdq2ng0000](/datasets/md/3d.md#visium-spatial-gene-expression-colon-abwx6fwqvahdq2ng0000), [visium-spatial-gene-expression-colon-p2dczaepp7jiumac0000](/datasets/md/56.md#visium-spatial-gene-expression-colon-p2dczaepp7jiumac0000), [visium-spatial-gene-expression-colon-3kv4urjh9wovpwxx0000](/datasets/md/1d.md#visium-spatial-gene-expression-colon-3kv4urjh9wovpwxx0000), [visium-spatial-gene-expression-colon-iuklrdw4rbmkcgaf0000](/datasets/md/87.md#visium-spatial-gene-expression-colon-iuklrdw4rbmkcgaf0000), [visium-spatial-gene-expression-colon-bzvfnosh4qogk1wj0000](/datasets/md/5c.md#visium-spatial-gene-expression-colon-bzvfnosh4qogk1wj0000), [visium-spatial-gene-expression-colon-oaniwcfu8xry95in0000](/datasets/md/d3.md#visium-spatial-gene-expression-colon-oaniwcfu8xry95in0000), [visium-spatial-gene-expression-colon-usuhxzczfpktlsge0000](/datasets/md/e7.md#visium-spatial-gene-expression-colon-usuhxzczfpktlsge0000), [visium-spatial-gene-expression-colon-apo7dpgashfegqv90000](/datasets/md/b8.md#visium-spatial-gene-expression-colon-apo7dpgashfegqv90000), [visium-spatial-gene-expression-colon-vq7ea8u6egce5yl80000](/datasets/md/ec.md#visium-spatial-gene-expression-colon-vq7ea8u6egce5yl80000), [visium-spatial-gene-expression-colon-ewx754a3yuzfdgae0000](/datasets/md/a2.md#visium-spatial-gene-expression-colon-ewx754a3yuzfdgae0000)

<a id="geo-gse313471"></a>
## Identification of a long-term surviving human mesenchymal stromal cell subpopulation upon intradermal injection in immunodeficient mice

- Page: /collections/geo-gse313471/
- Kind: comparison
- Datasets: 7
- Reference: PMID:42365332
- Design: scRNAseq of human BM-MSC cultured under 4 conditions: Monolayer Hypoxia (MoHyp), Monolayer Normoxia (MoNor), Spheroid Hypoxia (SpHyp) and Spheroid Normoxia (SpNor).
- Members: [visium-spatial-gene-expression-skin-of-body-tssalnpqzg5jowim0000](/datasets/md/72.md#visium-spatial-gene-expression-skin-of-body-tssalnpqzg5jowim0000), [visium-spatial-gene-expression-skin-of-body-nvg6iytzq7nyhk2x0000](/datasets/md/8a.md#visium-spatial-gene-expression-skin-of-body-nvg6iytzq7nyhk2x0000), [visium-spatial-gene-expression-skin-of-body-an3z8jemjrt9nadm0000](/datasets/md/70.md#visium-spatial-gene-expression-skin-of-body-an3z8jemjrt9nadm0000), [visium-spatial-gene-expression-skin-of-body-yu0lohnuca4venym0000](/datasets/md/86.md#visium-spatial-gene-expression-skin-of-body-yu0lohnuca4venym0000), [visium-spatial-gene-expression-skin-of-body-a44prhdhyf8zkf8b0000](/datasets/md/8a.md#visium-spatial-gene-expression-skin-of-body-a44prhdhyf8zkf8b0000), [visium-spatial-gene-expression-skin-of-body-ftyyhl5e4fqkwfxw0000](/datasets/md/79.md#visium-spatial-gene-expression-skin-of-body-ftyyhl5e4fqkwfxw0000), [visium-spatial-gene-expression-skin-of-body-5hzzpvb4ibpiv2ha0000](/datasets/md/d6.md#visium-spatial-gene-expression-skin-of-body-5hzzpvb4ibpiv2ha0000)

<a id="geo-gse326903"></a>
## Polarized neocortical organoids with areal signatures upon the formation of anterior and posterior organizers. [Spatial Transcriptomics]

- Page: /collections/geo-gse326903/
- Kind: time course
- Datasets: 3
- Reference: PMID:42624107
- Design: Organoids were self-assembled using 9,000 stem cells per organoid and cultured in brain cortical region-inducing media. The cortical organoids were either experienced without treatment, treated with FGF8, or treated with BMP4/CHIR. Samples were collected at D35, D56, or D97. For single-cell RNA sequencing, twenty-five cortical organoids were pooled for a D35 sample, and fifteen cortical organoids were pooled for a D56 and D97 sample. There were two biological repeats per time point. For spatial sequencing, each time point and each treatment contained 4 organoids. The samples were subjected to scRNA-seq and spatial sequencing to identify key marker genes in polarized neocortical organoids.
- Members: [visium-spatial-gene-expression-neocortex-zozz7dxot2luw3ou0000](/datasets/md/47.md#visium-spatial-gene-expression-neocortex-zozz7dxot2luw3ou0000), [visium-spatial-gene-expression-neocortex-hnc5cxbfuwrmn1rq0000](/datasets/md/cd.md#visium-spatial-gene-expression-neocortex-hnc5cxbfuwrmn1rq0000), [visium-spatial-gene-expression-neocortex-ukz2n9ltfam0ls6i0000](/datasets/md/c5.md#visium-spatial-gene-expression-neocortex-ukz2n9ltfam0ls6i0000)

<a id="zenodo-7742474"></a>
## zenodo-7742474

- Page: /collections/zenodo-7742474/
- Kind: other
- Datasets: 1
- Members: [phenocycler-pancreas-6qkrncqlrupxgnmx0000](/datasets/md/20.md#phenocycler-pancreas-6qkrncqlrupxgnmx0000)

<a id="geo-gse329415"></a>
## Spatial transcriptomics of bone taken from two PRF1-/-  B16F10-injected  and one PRF1-/-  healthy control- bone tissues using Xenium

- Page: /collections/geo-gse329415/
- Kind: comparison
- Datasets: 6
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE329415
- Design: This study used spatial transcriptomics to investigate gene expression changes in the bone microenvironment under perforin-deficient conditions. Bone tissues were collected from Prf1⁻/⁻ mice following bone injection (Prf1⁻/⁻ injected group) and from Prf1⁻/⁻ uninjected control mice. Spatial gene expression profiling was performed using the 10x Genomics Xenium platform to generate high-resolution, cell-resolved transcriptomic maps of bone tissue architecture.
- Members: [10x-xenium-bone-element-tor6hbn5pbwwrzeu0000](/datasets/md/bd.md#10x-xenium-bone-element-tor6hbn5pbwwrzeu0000), [10x-xenium-bone-element-5czgjo9htuhadxh50000](/datasets/md/c9.md#10x-xenium-bone-element-5czgjo9htuhadxh50000), [10x-xenium-bone-element-7nukzllrvydgtlhp0000](/datasets/md/46.md#10x-xenium-bone-element-7nukzllrvydgtlhp0000), [10x-xenium-bone-element-7sdnwe5k8scdxmhv0000](/datasets/md/99.md#10x-xenium-bone-element-7sdnwe5k8scdxmhv0000), [10x-xenium-bone-element-amhapenrkjcticrn0000](/datasets/md/72.md#10x-xenium-bone-element-amhapenrkjcticrn0000), [10x-xenium-bone-element-z0jfuvqow9oyacqn0000](/datasets/md/a3.md#10x-xenium-bone-element-z0jfuvqow9oyacqn0000)

<a id="geo-gse344594"></a>
## Spatial transcriptomic landscape of protein-coding genes in descended and undescended testes of dogs with unilateral cryptorchidism

- Page: /collections/geo-gse344594/
- Kind: comparison
- Datasets: 4
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE344594
- Design: Paired retained and contralateral descended testes were collected from two client-owned dogs undergoing clinically indicated orchiectomy. One dog had abdominal cryptorchidism associated with a disorder of sex development; the other had isolated inguinal cryptorchidism. One fresh-frozen Visium section was analyzed per testis (four libraries total). Spot-level comparisons were performed between retained and descended tissues and between the two retained tissues; there is no dog-level biological replication for these contrasts.
- Members: [visium-spatial-gene-expression-testis-clwofdxsbpkvuedf0000](/datasets/md/79.md#visium-spatial-gene-expression-testis-clwofdxsbpkvuedf0000), [visium-spatial-gene-expression-testis-ffongvudkugzh08b0000](/datasets/md/c5.md#visium-spatial-gene-expression-testis-ffongvudkugzh08b0000), [visium-spatial-gene-expression-testis-sat1hyilprwam3sv0000](/datasets/md/b0.md#visium-spatial-gene-expression-testis-sat1hyilprwam3sv0000), [visium-spatial-gene-expression-testis-38acybnli1c7q7080000](/datasets/md/39.md#visium-spatial-gene-expression-testis-38acybnli1c7q7080000)

<a id="geo-gse348919"></a>
## A single cell and spatial atlas of preinvasive breast cancer [Visium ST]

- Page: /collections/geo-gse348919/
- Kind: other
- Datasets: 11
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE348919
- Design: Spatial transcriptomics performed with Visium protocols on DCIS surgical samples
- Members: [visium-spatial-gene-expression-breast-v4hixidxcdgamepi0001](/datasets/md/02.md#visium-spatial-gene-expression-breast-v4hixidxcdgamepi0001), [visium-spatial-gene-expression-breast-3vaaidhxsdbgkuss0001](/datasets/md/01.md#visium-spatial-gene-expression-breast-3vaaidhxsdbgkuss0001), [visium-spatial-gene-expression-breast-3lyzt5chzwc5xzqz0000](/datasets/md/fd.md#visium-spatial-gene-expression-breast-3lyzt5chzwc5xzqz0000), [visium-spatial-gene-expression-breast-op4i3pzti65p8mow0000](/datasets/md/24.md#visium-spatial-gene-expression-breast-op4i3pzti65p8mow0000), [visium-spatial-gene-expression-breast-dt1t5f2j8nxqvyux0000](/datasets/md/16.md#visium-spatial-gene-expression-breast-dt1t5f2j8nxqvyux0000), [visium-spatial-gene-expression-breast-m4ejqdnqplxnv26j0000](/datasets/md/7e.md#visium-spatial-gene-expression-breast-m4ejqdnqplxnv26j0000), [visium-spatial-gene-expression-breast-enjk8nztspnz5ysp0000](/datasets/md/b6.md#visium-spatial-gene-expression-breast-enjk8nztspnz5ysp0000), [visium-spatial-gene-expression-breast-j0wr8v9inou022sa0000](/datasets/md/03.md#visium-spatial-gene-expression-breast-j0wr8v9inou022sa0000), [visium-spatial-gene-expression-breast-kqqqmcrwuty6u53w0000](/datasets/md/6b.md#visium-spatial-gene-expression-breast-kqqqmcrwuty6u53w0000), [visium-spatial-gene-expression-breast-aalnizieh6zcvisr0000](/datasets/md/8c.md#visium-spatial-gene-expression-breast-aalnizieh6zcvisr0000), [visium-spatial-gene-expression-breast-sxfioruief8su9vb0000](/datasets/md/b5.md#visium-spatial-gene-expression-breast-sxfioruief8su9vb0000)

<a id="hest-a-new-epithelial-cell-subpopulation-predicts-response-to-surgery-chemotherapy-and-immunotherapy-in-bladder-cancer"></a>
## A new epithelial cell subpopulation predicts response to surgery, chemotherapy, and immunotherapy in bladder cancer

- Page: /collections/hest-a-new-epithelial-cell-subpopulation-predicts-response-to-surgery-chemotherapy-and-immunotherapy-in-bladder-cancer/
- Kind: replicates
- Datasets: 4
- Members: [visium-spatial-gene-expression-urinary-bladder-cm4epbo9rohufjbo0000](/datasets/md/27.md#visium-spatial-gene-expression-urinary-bladder-cm4epbo9rohufjbo0000), [visium-spatial-gene-expression-urinary-bladder-twmokmgantjw9bur0000](/datasets/md/05.md#visium-spatial-gene-expression-urinary-bladder-twmokmgantjw9bur0000), [visium-spatial-gene-expression-urinary-bladder-nnfbbikgcn2vtgal0000](/datasets/md/3b.md#visium-spatial-gene-expression-urinary-bladder-nnfbbikgcn2vtgal0000), [visium-spatial-gene-expression-urinary-bladder-hucy7zjw7dlb318m0000](/datasets/md/98.md#visium-spatial-gene-expression-urinary-bladder-hucy7zjw7dlb318m0000)

<a id="abc-zhuang-abca-4"></a>
## Molecularly defined and spatially resolved cell atlas of the whole mouse brain.

- Page: /collections/abc-zhuang-abca-4/
- Kind: publication
- Datasets: 3
- Reference: 10.1038/s41586-023-06808-9
- Members: [merfish-brain-izvw805biv5r2wh50000](/datasets/md/0a.md#merfish-brain-izvw805biv5r2wh50000), [merfish-brain-epgzltqzfr2q07fq0000](/datasets/md/4f.md#merfish-brain-epgzltqzfr2q07fq0000), [merfish-brain-ddcp1khyx1c3nvkm0000](/datasets/md/a4.md#merfish-brain-ddcp1khyx1c3nvkm0000)

<a id="zenodo-12595241"></a>
## zenodo-12595241

- Page: /collections/zenodo-12595241/
- Kind: publication
- Datasets: 10
- Reference: 10.5281/zenodo.12595241
- Members: [stereo-seq-thymus-tayrspukhnjwkpgk0000](/datasets/md/b3.md#stereo-seq-thymus-tayrspukhnjwkpgk0000), [stereo-seq-thymus-agqlwid0nomkpquc0000](/datasets/md/5f.md#stereo-seq-thymus-agqlwid0nomkpquc0000), [stereo-seq-thymus-kh0acdvsxyxsqrj50000](/datasets/md/3b.md#stereo-seq-thymus-kh0acdvsxyxsqrj50000), [stereo-seq-thymus-hdct5zxoshbog3lq0000](/datasets/md/b9.md#stereo-seq-thymus-hdct5zxoshbog3lq0000), [stereo-seq-thymus-ltzcgj4vaollgktm0000](/datasets/md/2d.md#stereo-seq-thymus-ltzcgj4vaollgktm0000), [stereo-seq-thymus-yzy9zg8gfxumdmrm0000](/datasets/md/a8.md#stereo-seq-thymus-yzy9zg8gfxumdmrm0000), [stereo-seq-thymus-gxptveilwusjti8b0000](/datasets/md/74.md#stereo-seq-thymus-gxptveilwusjti8b0000), [stereo-seq-thymus-bqfftp2xubjvduk90000](/datasets/md/ef.md#stereo-seq-thymus-bqfftp2xubjvduk90000), [stereo-seq-thymus-bfrhcphssd50paxw0000](/datasets/md/66.md#stereo-seq-thymus-bfrhcphssd50paxw0000), [stereo-seq-thymus-lhdcvwvqqqinsgmr0000](/datasets/md/99.md#stereo-seq-thymus-lhdcvwvqqqinsgmr0000)

<a id="geo-gse283283"></a>
## Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection

- Page: /collections/geo-gse283283/
- Kind: other
- Datasets: 165
- Reference: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283283
- Design: We first performed spatial transcriptomics experiments using the spot-based 10x Visium platform on a wildtype mouse aging cohort (AC), consisting of up to five mice per timepoint (young: 4 months; middle-aged: 17 months; aged: 26 months) followed by deep sequencing. We processed single sections for the peripheral organs (heart, kidney, liver, lung and spleen) and five sections from the brain (Bregma: –1.7, -2.06, -2.7, -3.52 and -4.72) for each individual mouse (N=111). To validate the aging brain signatures at the sub-cellular level we performed STOmics Stereo-seq for three mouse brains, processing each at the same five Bregma as for the Visium data set (N=15). We then repeated the 10x Visium experiments with a completely separate infection cohort (IC), consisting of five young mice infected with the mouse parasite Plasmodium berghei, an animal model for cerebral malaria, and five respective young controls. The IC comprises three peripheral organs (liver, kidney and lung) and two preselected brain regions at bregma –2.06 and bregma 3.89 (the olfactory bulb) per individual mouse (N=42).
- Members: [visium-spatial-gene-expression-brain-2ygb0nspxb8jtxne0000](/datasets/md/ec.md#visium-spatial-gene-expression-brain-2ygb0nspxb8jtxne0000), [visium-spatial-gene-expression-lung-zrqd8r6tgwsxzztt0001](/datasets/md/c8.md#visium-spatial-gene-expression-lung-zrqd8r6tgwsxzztt0001), [visium-spatial-gene-expression-brain-vt56nlqvkxtoayhh0001](/datasets/md/f1.md#visium-spatial-gene-expression-brain-vt56nlqvkxtoayhh0001), [visium-spatial-gene-expression-brain-knp98ykq9dzm2otp0000](/datasets/md/c9.md#visium-spatial-gene-expression-brain-knp98ykq9dzm2otp0000), [visium-spatial-gene-expression-brain-fnqgmywukppf12ut0000](/datasets/md/42.md#visium-spatial-gene-expression-brain-fnqgmywukppf12ut0000), [visium-spatial-gene-expression-liver-ivbc2apjuspkp5v40001](/datasets/md/c4.md#visium-spatial-gene-expression-liver-ivbc2apjuspkp5v40001), [visium-spatial-gene-expression-brain-prvwmpjanzglphpz0000](/datasets/md/ed.md#visium-spatial-gene-expression-brain-prvwmpjanzglphpz0000), [visium-spatial-gene-expression-heart-07jxo3z0ogd2zd6s0001](/datasets/md/c9.md#visium-spatial-gene-expression-heart-07jxo3z0ogd2zd6s0001), [visium-spatial-gene-expression-brain-25dipwwaclbblwzt0000](/datasets/md/dd.md#visium-spatial-gene-expression-brain-25dipwwaclbblwzt0000), [visium-spatial-gene-expression-brain-9qzxxydwcakhvse30000](/datasets/md/df.md#visium-spatial-gene-expression-brain-9qzxxydwcakhvse30000), [visium-spatial-gene-expression-spleen-fq4zkorr57oplhbl0001](/datasets/md/5e.md#visium-spatial-gene-expression-spleen-fq4zkorr57oplhbl0001), [visium-spatial-gene-expression-lung-ef5ujic9tk0rk7ir0000](/datasets/md/85.md#visium-spatial-gene-expression-lung-ef5ujic9tk0rk7ir0000), [visium-spatial-gene-expression-brain-ggfjlqycan7ovpqb0000](/datasets/md/4e.md#visium-spatial-gene-expression-brain-ggfjlqycan7ovpqb0000), [visium-spatial-gene-expression-brain-v8ep6exit0amqzv50000](/datasets/md/53.md#visium-spatial-gene-expression-brain-v8ep6exit0amqzv50000), [visium-spatial-gene-expression-olfactory-bulb-iiraeypwkkl4ziej0000](/datasets/md/a3.md#visium-spatial-gene-expression-olfactory-bulb-iiraeypwkkl4ziej0000), [visium-spatial-gene-expression-spleen-ix2oxw1mfs4zpqap0000](/datasets/md/2f.md#visium-spatial-gene-expression-spleen-ix2oxw1mfs4zpqap0000), [visium-spatial-gene-expression-spleen-jlez78yjxm15cbnk0001](/datasets/md/dd.md#visium-spatial-gene-expression-spleen-jlez78yjxm15cbnk0001), [visium-spatial-gene-expression-brain-9vaxlfjf7ebj4rvh0001](/datasets/md/6c.md#visium-spatial-gene-expression-brain-9vaxlfjf7ebj4rvh0001), [visium-spatial-gene-expression-kidney-jemkpllvhobfvxbn0000](/datasets/md/06.md#visium-spatial-gene-expression-kidney-jemkpllvhobfvxbn0000), [visium-spatial-gene-expression-brain-tddcldnp0zfftjry0000](/datasets/md/15.md#visium-spatial-gene-expression-brain-tddcldnp0zfftjry0000), [visium-spatial-gene-expression-brain-zgbygz1hl0dhvsgs0000](/datasets/md/08.md#visium-spatial-gene-expression-brain-zgbygz1hl0dhvsgs0000), [visium-spatial-gene-expression-heart-dojkhcqljeskvvok0000](/datasets/md/71.md#visium-spatial-gene-expression-heart-dojkhcqljeskvvok0000), [visium-spatial-gene-expression-kidney-ud1hnpoaire2ahxv0000](/datasets/md/8f.md#visium-spatial-gene-expression-kidney-ud1hnpoaire2ahxv0000), [visium-spatial-gene-expression-heart-h0ojj7ib0vwrs4pm0000](/datasets/md/eb.md#visium-spatial-gene-expression-heart-h0ojj7ib0vwrs4pm0000), [visium-spatial-gene-expression-liver-cnjs2lvyoy3fulyn0000](/datasets/md/a1.md#visium-spatial-gene-expression-liver-cnjs2lvyoy3fulyn0000), [visium-spatial-gene-expression-brain-f9fph1daiuu7qfsa0000](/datasets/md/0c.md#visium-spatial-gene-expression-brain-f9fph1daiuu7qfsa0000), [visium-spatial-gene-expression-brain-3s1jysjeet41of1a0000](/datasets/md/fd.md#visium-spatial-gene-expression-brain-3s1jysjeet41of1a0000), [visium-spatial-gene-expression-lung-w7bszgdsbde3uuqo0000](/datasets/md/fe.md#visium-spatial-gene-expression-lung-w7bszgdsbde3uuqo0000), [visium-spatial-gene-expression-brain-yeeyitqy8prsztcf0000](/datasets/md/8d.md#visium-spatial-gene-expression-brain-yeeyitqy8prsztcf0000), [visium-spatial-gene-expression-lung-hhrnvs2uwcandfwl0000](/datasets/md/c5.md#visium-spatial-gene-expression-lung-hhrnvs2uwcandfwl0000), [visium-spatial-gene-expression-brain-qwlmswm45yncloz90000](/datasets/md/e6.md#visium-spatial-gene-expression-brain-qwlmswm45yncloz90000), [visium-spatial-gene-expression-brain-bzjlotfdjkog53ef0000](/datasets/md/ec.md#visium-spatial-gene-expression-brain-bzjlotfdjkog53ef0000), [visium-spatial-gene-expression-brain-11v0jaziitpvpdrt0000](/datasets/md/5a.md#visium-spatial-gene-expression-brain-11v0jaziitpvpdrt0000), [visium-spatial-gene-expression-olfactory-bulb-mzr2n2zjlvnqrdx50000](/datasets/md/51.md#visium-spatial-gene-expression-olfactory-bulb-mzr2n2zjlvnqrdx50000), [visium-spatial-gene-expression-liver-vioxweyhxa1wkn3f0000](/datasets/md/04.md#visium-spatial-gene-expression-liver-vioxweyhxa1wkn3f0000), [visium-spatial-gene-expression-kidney-9nncvo7s6i8m6vnj0000](/datasets/md/00.md#visium-spatial-gene-expression-kidney-9nncvo7s6i8m6vnj0000), [visium-spatial-gene-expression-lung-vzlzo88myll3yyti0000](/datasets/md/b0.md#visium-spatial-gene-expression-lung-vzlzo88myll3yyti0000), [visium-spatial-gene-expression-liver-uybr5sk2dfnjjx640000](/datasets/md/29.md#visium-spatial-gene-expression-liver-uybr5sk2dfnjjx640000), [visium-spatial-gene-expression-heart-ay1zlufgsqgi4zlg0000](/datasets/md/f7.md#visium-spatial-gene-expression-heart-ay1zlufgsqgi4zlg0000), [visium-spatial-gene-expression-liver-murqrzqluh4ksizf0000](/datasets/md/73.md#visium-spatial-gene-expression-liver-murqrzqluh4ksizf0000), [visium-spatial-gene-expression-brain-rpjwqkvw45ocx92t0000](/datasets/md/f8.md#visium-spatial-gene-expression-brain-rpjwqkvw45ocx92t0000), [visium-spatial-gene-expression-liver-3cmjseikzi7rdwik0000](/datasets/md/c8.md#visium-spatial-gene-expression-liver-3cmjseikzi7rdwik0000), [visium-spatial-gene-expression-brain-ccyeuwkk2zc3dgmx0000](/datasets/md/df.md#visium-spatial-gene-expression-brain-ccyeuwkk2zc3dgmx0000), [visium-spatial-gene-expression-olfactory-bulb-ckfnmfnqj9ofpyvf0000](/datasets/md/15.md#visium-spatial-gene-expression-olfactory-bulb-ckfnmfnqj9ofpyvf0000), [visium-spatial-gene-expression-liver-nqbhkzhqatfiauph0000](/datasets/md/d6.md#visium-spatial-gene-expression-liver-nqbhkzhqatfiauph0000), [visium-spatial-gene-expression-spleen-meivl7xyjbaniqkw0000](/datasets/md/5f.md#visium-spatial-gene-expression-spleen-meivl7xyjbaniqkw0000), [visium-spatial-gene-expression-spleen-nbtpdxpqbcahmdya0000](/datasets/md/23.md#visium-spatial-gene-expression-spleen-nbtpdxpqbcahmdya0000), [visium-spatial-gene-expression-kidney-ebkzexpdsqs59e600000](/datasets/md/e1.md#visium-spatial-gene-expression-kidney-ebkzexpdsqs59e600000), [visium-spatial-gene-expression-lung-d7fpjwbnpcsm9qy40000](/datasets/md/53.md#visium-spatial-gene-expression-lung-d7fpjwbnpcsm9qy40000), [visium-spatial-gene-expression-brain-3iyogzru1vbf2wqq0000](/datasets/md/6b.md#visium-spatial-gene-expression-brain-3iyogzru1vbf2wqq0000), [visium-spatial-gene-expression-brain-6nrqlh8cllieys4k0000](/datasets/md/ca.md#visium-spatial-gene-expression-brain-6nrqlh8cllieys4k0000), [visium-spatial-gene-expression-spleen-a3kmumnprckpqqmc0000](/datasets/md/47.md#visium-spatial-gene-expression-spleen-a3kmumnprckpqqmc0000), [visium-spatial-gene-expression-brain-9chwqcbizafusdnc0000](/datasets/md/9a.md#visium-spatial-gene-expression-brain-9chwqcbizafusdnc0000), [visium-spatial-gene-expression-spleen-jttjuikz4eyekv9q0000](/datasets/md/90.md#visium-spatial-gene-expression-spleen-jttjuikz4eyekv9q0000), [visium-spatial-gene-expression-brain-4q50md0credcdcq70000](/datasets/md/41.md#visium-spatial-gene-expression-brain-4q50md0credcdcq70000), [visium-spatial-gene-expression-lung-i3bgo9jpeac24vg80000](/datasets/md/26.md#visium-spatial-gene-expression-lung-i3bgo9jpeac24vg80000), [visium-spatial-gene-expression-brain-qxpiii5nxgcrmca80000](/datasets/md/a7.md#visium-spatial-gene-expression-brain-qxpiii5nxgcrmca80000), [visium-spatial-gene-expression-brain-8mdfx0bciubpwjwv0000](/datasets/md/64.md#visium-spatial-gene-expression-brain-8mdfx0bciubpwjwv0000), [visium-spatial-gene-expression-kidney-9z8u3dix4egkso0n0000](/datasets/md/d9.md#visium-spatial-gene-expression-kidney-9z8u3dix4egkso0n0000), [visium-spatial-gene-expression-brain-2sfcqrmeq19nqgnl0000](/datasets/md/42.md#visium-spatial-gene-expression-brain-2sfcqrmeq19nqgnl0000), [visium-spatial-gene-expression-kidney-g5gkk4hv2i9lxhzk0000](/datasets/md/4f.md#visium-spatial-gene-expression-kidney-g5gkk4hv2i9lxhzk0000), [visium-spatial-gene-expression-spleen-hbzp4bzbc5pxn5j70000](/datasets/md/04.md#visium-spatial-gene-expression-spleen-hbzp4bzbc5pxn5j70000), [visium-spatial-gene-expression-brain-tplv0764f0bqpli50000](/datasets/md/6d.md#visium-spatial-gene-expression-brain-tplv0764f0bqpli50000), [visium-spatial-gene-expression-liver-hky9fsna7ioqt5ip0000](/datasets/md/d2.md#visium-spatial-gene-expression-liver-hky9fsna7ioqt5ip0000), [visium-spatial-gene-expression-kidney-wgsioofgcsfdrj4h0000](/datasets/md/cd.md#visium-spatial-gene-expression-kidney-wgsioofgcsfdrj4h0000), [visium-spatial-gene-expression-liver-bwxacudtgl4cpwy60000](/datasets/md/fe.md#visium-spatial-gene-expression-liver-bwxacudtgl4cpwy60000), [visium-spatial-gene-expression-brain-dnmjzh19on2hg1sl0000](/datasets/md/e5.md#visium-spatial-gene-expression-brain-dnmjzh19on2hg1sl0000), [visium-spatial-gene-expression-brain-b02kl214hin4z6ao0000](/datasets/md/0a.md#visium-spatial-gene-expression-brain-b02kl214hin4z6ao0000), [visium-spatial-gene-expression-brain-x9edgcrkq8eo3alo0000](/datasets/md/cd.md#visium-spatial-gene-expression-brain-x9edgcrkq8eo3alo0000), [visium-spatial-gene-expression-lung-74fdsrzocolveoeb0000](/datasets/md/e7.md#visium-spatial-gene-expression-lung-74fdsrzocolveoeb0000), [visium-spatial-gene-expression-liver-sknofegpfy2fvub30000](/datasets/md/1f.md#visium-spatial-gene-expression-liver-sknofegpfy2fvub30000), [visium-spatial-gene-expression-spleen-juuatdxe19zrzkvr0000](/datasets/md/e8.md#visium-spatial-gene-expression-spleen-juuatdxe19zrzkvr0000), [visium-spatial-gene-expression-heart-xxdlyagnpdwwwjyo0000](/datasets/md/1e.md#visium-spatial-gene-expression-heart-xxdlyagnpdwwwjyo0000), [visium-spatial-gene-expression-liver-2mh18dbn2ci6mw1t0000](/datasets/md/ac.md#visium-spatial-gene-expression-liver-2mh18dbn2ci6mw1t0000), [visium-spatial-gene-expression-brain-idev15qjikv3q72k0000](/datasets/md/93.md#visium-spatial-gene-expression-brain-idev15qjikv3q72k0000), [visium-spatial-gene-expression-brain-uon5ofliozxby2x50000](/datasets/md/f5.md#visium-spatial-gene-expression-brain-uon5ofliozxby2x50000), [visium-spatial-gene-expression-brain-q5q6f1mgdw7rhtfr0000](/datasets/md/a8.md#visium-spatial-gene-expression-brain-q5q6f1mgdw7rhtfr0000), [visium-spatial-gene-expression-lung-8xiksnneoxnvdrmq0000](/datasets/md/14.md#visium-spatial-gene-expression-lung-8xiksnneoxnvdrmq0000), [visium-spatial-gene-expression-kidney-v4bsuevswzcfopoi0000](/datasets/md/87.md#visium-spatial-gene-expression-kidney-v4bsuevswzcfopoi0000), [visium-spatial-gene-expression-kidney-skpt5osquzpqnthj0000](/datasets/md/4f.md#visium-spatial-gene-expression-kidney-skpt5osquzpqnthj0000), [visium-spatial-gene-expression-brain-kyifyzll5skecg4i0000](/datasets/md/d8.md#visium-spatial-gene-expression-brain-kyifyzll5skecg4i0000), [visium-spatial-gene-expression-kidney-kfkwjsom5hovkign0000](/datasets/md/63.md#visium-spatial-gene-expression-kidney-kfkwjsom5hovkign0000), [visium-spatial-gene-expression-heart-nxc9zffsv5rboa6g0000](/datasets/md/61.md#visium-spatial-gene-expression-heart-nxc9zffsv5rboa6g0000), [visium-spatial-gene-expression-liver-uwxscsmrvqm2dikv0000](/datasets/md/1c.md#visium-spatial-gene-expression-liver-uwxscsmrvqm2dikv0000), [visium-spatial-gene-expression-brain-dipibupf3dmnsg8n0000](/datasets/md/86.md#visium-spatial-gene-expression-brain-dipibupf3dmnsg8n0000), [visium-spatial-gene-expression-kidney-enqkfrjwldfubmit0000](/datasets/md/99.md#visium-spatial-gene-expression-kidney-enqkfrjwldfubmit0000), [visium-spatial-gene-expression-brain-gxwvnmix21hpx5si0000](/datasets/md/1e.md#visium-spatial-gene-expression-brain-gxwvnmix21hpx5si0000), [visium-spatial-gene-expression-heart-1vjtsendglooxwcf0000](/datasets/md/f5.md#visium-spatial-gene-expression-heart-1vjtsendglooxwcf0000), [visium-spatial-gene-expression-spleen-xi1e1m1kneh4ilvc0000](/datasets/md/93.md#visium-spatial-gene-expression-spleen-xi1e1m1kneh4ilvc0000), [visium-spatial-gene-expression-brain-fdzyemeixwqjiqjb0000](/datasets/md/53.md#visium-spatial-gene-expression-brain-fdzyemeixwqjiqjb0000), [visium-spatial-gene-expression-kidney-hy6i807e0b4navqx0000](/datasets/md/13.md#visium-spatial-gene-expression-kidney-hy6i807e0b4navqx0000), [visium-spatial-gene-expression-liver-atdlvhzvaqgntehi0000](/datasets/md/55.md#visium-spatial-gene-expression-liver-atdlvhzvaqgntehi0000), [visium-spatial-gene-expression-brain-jzokanzbuq0vciaq0000](/datasets/md/1b.md#visium-spatial-gene-expression-brain-jzokanzbuq0vciaq0000), [visium-spatial-gene-expression-lung-gghbptzlww7nxx0r0000](/datasets/md/ff.md#visium-spatial-gene-expression-lung-gghbptzlww7nxx0r0000), [visium-spatial-gene-expression-brain-9woixaw3wyugp5nh0000](/datasets/md/50.md#visium-spatial-gene-expression-brain-9woixaw3wyugp5nh0000), [visium-spatial-gene-expression-brain-268iosfncghnyken0000](/datasets/md/12.md#visium-spatial-gene-expression-brain-268iosfncghnyken0000), [visium-spatial-gene-expression-brain-fiay7uv7euhp06cv0000](/datasets/md/b2.md#visium-spatial-gene-expression-brain-fiay7uv7euhp06cv0000), [visium-spatial-gene-expression-kidney-fiahq4okiyvpqqxt0000](/datasets/md/5e.md#visium-spatial-gene-expression-kidney-fiahq4okiyvpqqxt0000), [visium-spatial-gene-expression-brain-becnnu2butisj0hb0000](/datasets/md/f5.md#visium-spatial-gene-expression-brain-becnnu2butisj0hb0000), [visium-spatial-gene-expression-liver-atopan3nyfxfh0zi0000](/datasets/md/73.md#visium-spatial-gene-expression-liver-atopan3nyfxfh0zi0000), [visium-spatial-gene-expression-liver-nqgwewzf2laqwyie0000](/datasets/md/14.md#visium-spatial-gene-expression-liver-nqgwewzf2laqwyie0000), [visium-spatial-gene-expression-brain-ozdwwqhzyp4dvxis0000](/datasets/md/dd.md#visium-spatial-gene-expression-brain-ozdwwqhzyp4dvxis0000), [visium-spatial-gene-expression-lung-cq3r1pkpqsrj0omg0000](/datasets/md/66.md#visium-spatial-gene-expression-lung-cq3r1pkpqsrj0omg0000), [visium-spatial-gene-expression-brain-9aubyefqfqdm3hhx0000](/datasets/md/b9.md#visium-spatial-gene-expression-brain-9aubyefqfqdm3hhx0000), [visium-spatial-gene-expression-heart-k8e7mdf34dhy6fmv0000](/datasets/md/2f.md#visium-spatial-gene-expression-heart-k8e7mdf34dhy6fmv0000), [visium-spatial-gene-expression-lung-kgy9kgqasvwk6hm10000](/datasets/md/5c.md#visium-spatial-gene-expression-lung-kgy9kgqasvwk6hm10000), [visium-spatial-gene-expression-olfactory-bulb-fgnewuormpnlzfjo0000](/datasets/md/4a.md#visium-spatial-gene-expression-olfactory-bulb-fgnewuormpnlzfjo0000), [visium-spatial-gene-expression-brain-i24znto8tpnvmafu0000](/datasets/md/ae.md#visium-spatial-gene-expression-brain-i24znto8tpnvmafu0000), [visium-spatial-gene-expression-kidney-hvm03a2y9txel4zu0000](/datasets/md/6d.md#visium-spatial-gene-expression-kidney-hvm03a2y9txel4zu0000), [visium-spatial-gene-expression-spleen-cgtwpcydsz8qhzdb0000](/datasets/md/2c.md#visium-spatial-gene-expression-spleen-cgtwpcydsz8qhzdb0000), [visium-spatial-gene-expression-olfactory-bulb-6z4xmh7fb4xa6ozv0000](/datasets/md/7a.md#visium-spatial-gene-expression-olfactory-bulb-6z4xmh7fb4xa6ozv0000), [visium-spatial-gene-expression-brain-tsn5spbedsq4inmf0000](/datasets/md/da.md#visium-spatial-gene-expression-brain-tsn5spbedsq4inmf0000), [visium-spatial-gene-expression-brain-i2l32kp2fstztl2b0000](/datasets/md/e1.md#visium-spatial-gene-expression-brain-i2l32kp2fstztl2b0000), [visium-spatial-gene-expression-kidney-auvzjcuf17sc6ssw0000](/datasets/md/68.md#visium-spatial-gene-expression-kidney-auvzjcuf17sc6ssw0000), [visium-spatial-gene-expression-brain-ezmlbwiihljfwayk0000](/datasets/md/b4.md#visium-spatial-gene-expression-brain-ezmlbwiihljfwayk0000), [visium-spatial-gene-expression-brain-rwgyz15omwt9ebot0000](/datasets/md/d6.md#visium-spatial-gene-expression-brain-rwgyz15omwt9ebot0000), [visium-spatial-gene-expression-brain-fmaca5y5xes6u2mm0000](/datasets/md/13.md#visium-spatial-gene-expression-brain-fmaca5y5xes6u2mm0000), [visium-spatial-gene-expression-lung-oraz7aaddps0jqos0000](/datasets/md/08.md#visium-spatial-gene-expression-lung-oraz7aaddps0jqos0000), [visium-spatial-gene-expression-lung-tnd6hi2egacgjgkn0000](/datasets/md/58.md#visium-spatial-gene-expression-lung-tnd6hi2egacgjgkn0000), [visium-spatial-gene-expression-spleen-iyqyjdo6snrf86ku0000](/datasets/md/e4.md#visium-spatial-gene-expression-spleen-iyqyjdo6snrf86ku0000), [visium-spatial-gene-expression-olfactory-bulb-pdqxteksmniwxblp0000](/datasets/md/41.md#visium-spatial-gene-expression-olfactory-bulb-pdqxteksmniwxblp0000), [visium-spatial-gene-expression-olfactory-bulb-n0ejgosljhntunen0000](/datasets/md/23.md#visium-spatial-gene-expression-olfactory-bulb-n0ejgosljhntunen0000), [visium-spatial-gene-expression-brain-c7aiplvfupyfqpja0000](/datasets/md/fb.md#visium-spatial-gene-expression-brain-c7aiplvfupyfqpja0000), [visium-spatial-gene-expression-liver-6rnhmuh2v2xdam540000](/datasets/md/64.md#visium-spatial-gene-expression-liver-6rnhmuh2v2xdam540000), [visium-spatial-gene-expression-brain-v2tybrpqmbuve2hg0000](/datasets/md/70.md#visium-spatial-gene-expression-brain-v2tybrpqmbuve2hg0000), [visium-spatial-gene-expression-lung-yh47ffirrc2ptvsd0000](/datasets/md/e2.md#visium-spatial-gene-expression-lung-yh47ffirrc2ptvsd0000), [visium-spatial-gene-expression-heart-no26y3kjoobuge3c0000](/datasets/md/91.md#visium-spatial-gene-expression-heart-no26y3kjoobuge3c0000), [visium-spatial-gene-expression-heart-vwsuiynhkahrlwss0000](/datasets/md/fb.md#visium-spatial-gene-expression-heart-vwsuiynhkahrlwss0000), [visium-spatial-gene-expression-liver-ncatx8oa92b0jk8h0000](/datasets/md/65.md#visium-spatial-gene-expression-liver-ncatx8oa92b0jk8h0000), [visium-spatial-gene-expression-kidney-tan3zckxmvmxukev0000](/datasets/md/27.md#visium-spatial-gene-expression-kidney-tan3zckxmvmxukev0000), [visium-spatial-gene-expression-brain-gfnhiuyhkdkdqkus0000](/datasets/md/09.md#visium-spatial-gene-expression-brain-gfnhiuyhkdkdqkus0000), [visium-spatial-gene-expression-spleen-7vkwwwqsclyg7yss0000](/datasets/md/5f.md#visium-spatial-gene-expression-spleen-7vkwwwqsclyg7yss0000), [visium-spatial-gene-expression-brain-tthfrf4xsrvswrip0000](/datasets/md/d7.md#visium-spatial-gene-expression-brain-tthfrf4xsrvswrip0000), [visium-spatial-gene-expression-liver-tkfepge7llsbxbvs0000](/datasets/md/d0.md#visium-spatial-gene-expression-liver-tkfepge7llsbxbvs0000), [visium-spatial-gene-expression-olfactory-bulb-jlo6oxjexhnyagjb0000](/datasets/md/42.md#visium-spatial-gene-expression-olfactory-bulb-jlo6oxjexhnyagjb0000), [visium-spatial-gene-expression-brain-4lmkb77veygrfvni0000](/datasets/md/f4.md#visium-spatial-gene-expression-brain-4lmkb77veygrfvni0000), [visium-spatial-gene-expression-brain-i2zzl0gs52gwaows0000](/datasets/md/56.md#visium-spatial-gene-expression-brain-i2zzl0gs52gwaows0000), [visium-spatial-gene-expression-kidney-eskrkjncf0vqorhd0000](/datasets/md/ec.md#visium-spatial-gene-expression-kidney-eskrkjncf0vqorhd0000), [visium-spatial-gene-expression-lung-tqezqzfmakr4zvpi0000](/datasets/md/35.md#visium-spatial-gene-expression-lung-tqezqzfmakr4zvpi0000), [visium-spatial-gene-expression-kidney-tdf1vswtzrjxhylv0000](/datasets/md/fc.md#visium-spatial-gene-expression-kidney-tdf1vswtzrjxhylv0000), [visium-spatial-gene-expression-lung-mafje078snf0biqj0000](/datasets/md/9e.md#visium-spatial-gene-expression-lung-mafje078snf0biqj0000), [visium-spatial-gene-expression-brain-sybl962rkuzluhqy0000](/datasets/md/0a.md#visium-spatial-gene-expression-brain-sybl962rkuzluhqy0000), [visium-spatial-gene-expression-kidney-u4br1qk37ar6wshq0000](/datasets/md/15.md#visium-spatial-gene-expression-kidney-u4br1qk37ar6wshq0000), [visium-spatial-gene-expression-lung-aucla7rvff5e0zbw0000](/datasets/md/9e.md#visium-spatial-gene-expression-lung-aucla7rvff5e0zbw0000), [visium-spatial-gene-expression-heart-bcgn2fitg3wbssq00000](/datasets/md/6a.md#visium-spatial-gene-expression-heart-bcgn2fitg3wbssq00000), [visium-spatial-gene-expression-brain-wv4yz0tsxw555aak0000](/datasets/md/05.md#visium-spatial-gene-expression-brain-wv4yz0tsxw555aak0000), [visium-spatial-gene-expression-brain-jvgfedk93ls9gqsa0000](/datasets/md/01.md#visium-spatial-gene-expression-brain-jvgfedk93ls9gqsa0000), [visium-spatial-gene-expression-heart-y3xez346whm0cunq0000](/datasets/md/0b.md#visium-spatial-gene-expression-heart-y3xez346whm0cunq0000), [visium-spatial-gene-expression-brain-xfemfgsyaf5npwcz0000](/datasets/md/55.md#visium-spatial-gene-expression-brain-xfemfgsyaf5npwcz0000), [visium-spatial-gene-expression-liver-kkwnukiwz8gyjo6h0000](/datasets/md/f6.md#visium-spatial-gene-expression-liver-kkwnukiwz8gyjo6h0000), [stereo-seq-brain-h8bo5qykr2daxihb0000](/datasets/md/9b.md#stereo-seq-brain-h8bo5qykr2daxihb0000), [stereo-seq-brain-wzc3zqls9p6z0evi0000](/datasets/md/d1.md#stereo-seq-brain-wzc3zqls9p6z0evi0000), [stereo-seq-brain-murg4dtfpblinzzh0000](/datasets/md/e2.md#stereo-seq-brain-murg4dtfpblinzzh0000), [stereo-seq-brain-8l53xe3w7e6qcpsd0000](/datasets/md/1b.md#stereo-seq-brain-8l53xe3w7e6qcpsd0000), [stereo-seq-brain-jr2wzbxxxm3bpcu40000](/datasets/md/63.md#stereo-seq-brain-jr2wzbxxxm3bpcu40000), [stereo-seq-brain-92xr0pscame8padt0000](/datasets/md/30.md#stereo-seq-brain-92xr0pscame8padt0000), [stereo-seq-brain-84hlcf2aottyn70h0000](/datasets/md/2f.md#stereo-seq-brain-84hlcf2aottyn70h0000), [stereo-seq-brain-elkqw24ts7cieamx0000](/datasets/md/02.md#stereo-seq-brain-elkqw24ts7cieamx0000), [stereo-seq-brain-c0sc56qdmmyjpidj0000](/datasets/md/5a.md#stereo-seq-brain-c0sc56qdmmyjpidj0000), [stereo-seq-brain-ajwttgx8qcr4xbbb0000](/datasets/md/98.md#stereo-seq-brain-ajwttgx8qcr4xbbb0000), [stereo-seq-brain-w8yvjjjlf4xszb5x0000](/datasets/md/4a.md#stereo-seq-brain-w8yvjjjlf4xszb5x0000), [stereo-seq-brain-6afdmkmqmi0t6hin0000](/datasets/md/fd.md#stereo-seq-brain-6afdmkmqmi0t6hin0000), [stereo-seq-brain-xjg7m13qp6dbtpkm0000](/datasets/md/fc.md#stereo-seq-brain-xjg7m13qp6dbtpkm0000), [stereo-seq-brain-skbsqv9u0mcyo8bh0000](/datasets/md/9f.md#stereo-seq-brain-skbsqv9u0mcyo8bh0000), [stereo-seq-brain-8ew6nfoy6kn7szho0000](/datasets/md/b5.md#stereo-seq-brain-8ew6nfoy6kn7szho0000)

<a id="geo-gse333479"></a>
## geo-gse333479

- Page: /collections/geo-gse333479/
- Kind: other
- Datasets: 21
- Members: [stereo-seq-skin-of-body-tjs4rcuktbdmd3ma0000](/datasets/md/71.md#stereo-seq-skin-of-body-tjs4rcuktbdmd3ma0000), [stereo-seq-kidney-eodet8ai0z4qsfe70000](/datasets/md/6a.md#stereo-seq-kidney-eodet8ai0z4qsfe70000), [stereo-seq-spleen-xaknsjybzexxcquu0000](/datasets/md/22.md#stereo-seq-spleen-xaknsjybzexxcquu0000), [stereo-seq-kidney-lhpwr4lrmcl43wyo0000](/datasets/md/14.md#stereo-seq-kidney-lhpwr4lrmcl43wyo0000), [stereo-seq-brain-g17voc0c4hi7dk4w0000](/datasets/md/d6.md#stereo-seq-brain-g17voc0c4hi7dk4w0000), [stereo-seq-brain-27bnl8pbaeptytge0000](/datasets/md/65.md#stereo-seq-brain-27bnl8pbaeptytge0000), [stereo-seq-thymus-byxirnrb5asluvfr0000](/datasets/md/ef.md#stereo-seq-thymus-byxirnrb5asluvfr0000), [stereo-seq-brain-zdvkeytmdq0in1ra0000](/datasets/md/51.md#stereo-seq-brain-zdvkeytmdq0in1ra0000), [stereo-seq-thymus-ka7ts3vhph9yduns0000](/datasets/md/1d.md#stereo-seq-thymus-ka7ts3vhph9yduns0000), [stereo-seq-thymus-rjcett3pv0q2c4dx0000](/datasets/md/a2.md#stereo-seq-thymus-rjcett3pv0q2c4dx0000), [stereo-seq-testis-wgwn7ohlbcylnry80000](/datasets/md/90.md#stereo-seq-testis-wgwn7ohlbcylnry80000), [stereo-seq-uterus-8b528xjhan2cvmdq0000](/datasets/md/bb.md#stereo-seq-uterus-8b528xjhan2cvmdq0000), [stereo-seq-uterus-x4igz26uahs6amqn0000](/datasets/md/c6.md#stereo-seq-uterus-x4igz26uahs6amqn0000), [stereo-seq-skin-of-body-ql3ctnuvohyxrn7f0000](/datasets/md/1b.md#stereo-seq-skin-of-body-ql3ctnuvohyxrn7f0000), [stereo-seq-testis-ifttzeg4e8n8t2rg0000](/datasets/md/cd.md#stereo-seq-testis-ifttzeg4e8n8t2rg0000), [stereo-seq-spleen-rnwedfteeqjjooov0000](/datasets/md/36.md#stereo-seq-spleen-rnwedfteeqjjooov0000), [stereo-seq-lung-rrgfb5coaowmit7d0000](/datasets/md/f1.md#stereo-seq-lung-rrgfb5coaowmit7d0000), [stereo-seq-large-intestine-pffbfe7ch8lrjmqi0000](/datasets/md/ca.md#stereo-seq-large-intestine-pffbfe7ch8lrjmqi0000), [stereo-seq-ovary-6xyltmmnsieeigrb0000](/datasets/md/a1.md#stereo-seq-ovary-6xyltmmnsieeigrb0000), [stereo-seq-large-intestine-mepdhhr7l98o90sz0000](/datasets/md/5b.md#stereo-seq-large-intestine-mepdhhr7l98o90sz0000), [stereo-seq-ovary-gzzredrpvpeazvhy0000](/datasets/md/7f.md#stereo-seq-ovary-gzzredrpvpeazvhy0000)