Mouse heart
NCBI787
mouse heart 461 MB 2,823 spots bronze H&E
TechnologyVisium
Organismmouse
Tissueheart
Spots2,823
bronze H&E
Collections / YAP Drives Assembly of a Spatially Colocalized Cellular Triad Required for Heart Renewal
YAP Drives Assembly of a Spatially Colocalized Cellular Triad Required for Heart Renewal
Datasets2
Size~958 MB
AssayVisium
Samplemouse · heart
KindComparison
Download the whole collection
Python · sddb client
from sddb import Catalog
cohort = Catalog().collection("hest-yap-drives-assembly-of-a-spatially-colocalized-cellular-triad-required-for-heart-renewal")
cohort.members # the 2 datasets as a table
print(cohort.licenses()) # check the terms before you download
sdatas = cohort.to_dict() # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/") Python · lamindb
Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.
import lamindb as ln
db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="hest-yap-drives-assembly-of-a-spatially-colocalized-cellular-triad-required-for-heart-renewal")
coll.ordered_artifacts.to_dataframe() # the 2 members, ordered
# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()] Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection hest-yap-drives-assembly-of-a-spatially-colocalized-cellular-triad-required-for-heart-renewal --dest data/Licenses: 2 CC BY-NC-SA 4.0
Member datasets · 2
