Collections / Regional differential gene expression analyses of brains from four 24w-old Nf1+- mice

Regional differential gene expression analyses of brains from four 24w-old Nf1+- mice

Datasets4
Size~1.4 GB
AssayVisium
Samplemouse · brain
KindOther
Flag a data issue
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("hest-regional-differential-gene-expression-analyses-of-brains-from-four-24w-old-nf1-mice")
cohort.members        # the 4 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="hest-regional-differential-gene-expression-analyses-of-brains-from-four-24w-old-nf1-mice")
coll.ordered_artifacts.to_dataframe()   # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection hest-regional-differential-gene-expression-analyses-of-brains-from-four-24w-old-nf1-mice --dest data/

Licenses: 4 CC BY-NC-SA 4.0

Open in Vitessce
Visium
Mouse brain
NCBI807
mouse brain 371 MB 2,320 spots bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size371 MB
Spots2,320
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NCBI808
mouse brain 333 MB 2,359 spots bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size333 MB
Spots2,359
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NCBI806
mouse brain 343 MB 1,435 spots bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size343 MB
Spots1,435
bronze H&E Open in Vitessce
Open in Vitessce
Visium
Mouse brain
NCBI809
mouse brain 352 MB 1,554 spots bronze H&E
TechnologyVisium
Organismmouse
Tissuebrain
Size352 MB
Spots1,554
bronze H&E Open in Vitessce