Collections / Inflammatory immune modulators of AML lung infiltration and respiratory failure

Inflammatory immune modulators of AML lung infiltration and respiratory failure

Acute myeloid leukemia (AML) is a blood cancer with poor survival outcomes. In the acute setting, respiratory failure occurs frequently due to leukemia infiltration of the lungs. Underlying mechanisms remain unexplored and therapeutic interventions are only empiric. Here, we map the landscape of the AML lung microenvironment at both spatial and single-cell resolution. We show that inflammatory responses are triggered, as a part of an extensive remodeling of the lung stroma and immune microenvironment. Tumor cell infiltration impairs lung integrity and function; however, steroid treatment significantly slows down inflammation and lung infiltration and rapidly improves oxygenation and pulmonary function in AML patients with respiratory compromise attributed to leukemic infiltrates in the absence of infection. As a mechanistic correlate, we show that expression of the S-type lectin Lgals9 is triggered by inflammation and mediates cell-cell interactions within the infiltrated lungs. Also, we show that the cytokine IL-33 and its receptor are involved in cell-cell interactions within the leukemic lung microenvironment. Targeting of either the Lgals9 or IL33 axis significantly decreases levels of lung infiltration, by reshaping the immune landscape and AML cells. Our study is the first to characterize extra-medullary AML tumor microenvironments and to map pulmonary infiltration phenotypes in acute leukemia, opening the way for the design of novel treatment strategies.

Datasets3
Size~14.5 GB
Assay10x Xenium
Samplehuman · lung
KindComparison
Flag a data issue
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("geo-gse319763")
cohort.members        # the 3 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse319763")
coll.ordered_artifacts.to_dataframe()   # the 3 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse319763 --dest data/

Licenses: 3 NCBI GEO policy

Open in Vitessce
10x Xenium
Human lung
GSM9525964
human lung acute myeloid leukemia 534 MB 43,810 cells silver NCBI GEO policy
Technology10x Xenium
Organismhuman
Tissuelung
Conditionacute myeloid leukemia
Size534 MB
Cells43,810
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Human lung
GSM9525962
human lung 5.5 GB 244,374 cells silver NCBI GEO policy
Technology10x Xenium
Organismhuman
Tissuelung
Size5.5 GB
Cells244,374
silver NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Human lung
GSM9525963
human lung acute myeloid leukemia 8.5 GB 736,414 cells silver NCBI GEO policy
Technology10x Xenium
Organismhuman
Tissuelung
Conditionacute myeloid leukemia
Size8.5 GB
Cells736,414
silver NCBI GEO policy Open in Vitessce