Collections / geo-gse306833

geo-gse306833

Datasets2
Size~2.4 GB
TechnologyVisium HD
Samplemouse · small intestine
KindPublication
Flag a data issue
10.1016/j.jcmgh.2026.101740 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("geo-gse306833")
cohort.members        # the 2 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse306833")
coll.ordered_artifacts.to_dataframe()   # the 2 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse306833 --dest data/

Licenses: 2 NCBI GEO policy

Dietary Stearic Acid Accelerates Intestinal Tumorigenesis via Fatty Acid-binding Protein 5 Without Promoting Obesity.

<h4>Background & aims</h4>Dietary fat increases the risk of intestinal cancer, but the effect of the fatty acid composition on tumorigenesis is unclear. The aim of this study is to investigate the impact of diets with different fatty acids on carcinogenesis in the intestine.<h4>Methods</h4>Mice were fed a linoleic acid (LA)-rich or stearic acid (SA)-rich high-fat diet (HFD) from the age of 4 weeks. The Apc<sup>Min/+</sup> mice and an azoxymethane- and a dextran sulfate sodium-induced colorectal cancer (CRC) mouse model were used to examine the effects of different dietary fatty acids on CRC development. Fatty acid-binding protein 5 (FABP5) knockout mice and SBFI-26, an inhibitor of FABP5, were used to assess its contribution.<h4>Results</h4>We found that an SA-rich HFD more strongly accelerated tumorigenesis in murine CRC models than an LA-rich HFD, with fewer obesity phenotypes compared with LA-rich HFD-fed mice. Dietary SA more strongly promoted epithelial cell proliferation and Paneth cell differentiation than LA, whereas no differences in the numbers of leucine-rich repeat-containing G protein-coupled receptor 5<sup>+</sup> and B lymphoma Mo-MLV insertion region 1 homolog<sup>+</sup> intestinal stem cells were detected between the groups. In murine and human intestinal organoids, SA promoted crypt formation. We found that FABP5 was expressed in a small population of Ki67<sup>+</sup> proliferative cells in crypts, and the number of Ki67<sup>+</sup> FABP5<sup>+</sup> cells was increased by SA-rich HFD feeding. FABP5 inhibition suppressed SA-induced epithelial cell proliferation, Paneth cell differentiation, and tumorigenesis.<h4>Conclusions</h4>Dietary SA can promote CRC via FABP5 without promoting obesity.

Open in Vitessce
Visium HD
Mouse small intestine
GSM9210423
mouse small intestine 1.2 GB 570,718 bins bronze NCBI GEO policy
TechnologyVisium HD
Organismmouse
Tissuesmall intestine
Size1.2 GB
Bins570,718
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium HD
Mouse small intestine
GSM9210422
mouse small intestine 1.2 GB 500,025 bins bronze NCBI GEO policy
TechnologyVisium HD
Organismmouse
Tissuesmall intestine
Size1.2 GB
Bins500,025
bronze NCBI GEO policy Open in Vitessce

Cite this collection

doi.org/10.1016/j.jcmgh.2026.101740 ↗
BibTeX
@article{Nakata_2026,
  title = {Dietary Stearic Acid Accelerates Intestinal Tumorigenesis via Fatty Acid-binding Protein 5 Without Promoting Obesity},
  volume = {20},
  ISSN = {2352-345X},
  url = {http://dx.doi.org/10.1016/j.jcmgh.2026.101740},
  DOI = {10.1016/j.jcmgh.2026.101740},
  number = {5},
  journal = {Cellular and Molecular Gastroenterology and Hepatology},
  publisher = {Elsevier BV},
  author = {Nakata, Kazuaki and Komiyama, Seiga and Sekine, Keisuke and Nagai, Motoyoshi and Okawa, Takuma and Ohashi, Wakana and Nakano, Kenta and Okamura, Tadashi and Kozono, Takuma and Takemura, Nobuyuki and Yamada, Kazuhiko and Kokudo, Norihiro and Dohi, Taeko and Hase, Koji and Kawamura, Yuki I.},
  year = {2026},
  pages = {101740}
}