Collections / Eosinophils Orchestrate Intestinal Remodeling and Promote Innate Defense During Reproduction

Eosinophils Orchestrate Intestinal Remodeling and Promote Innate Defense During Reproduction

Mammalian reproduction requires profound maternal immune adaptations to safeguard reproductive success and ultimately shape the evolutionary trajectories of a species. While systemic and placental immunity is known to shift toward tolerance during pregnancy, how maternal immunity adapts in barrier tissues, sites of frequent infection and inflammation, from pregnancy through the postpartum lactation period remains poorly understood. Here, we discovered a previously unrecognized role for eosinophils, a type of granulocyte typically associated with allergies and helminth infections, in remodeling the intestinal barrier during reproduction. Beginning in pregnancy and peaking during lactation, eosinophils originating from bone marrow accumulate in the small intestine in the absence of infection or inflammation. Using genetic and pharmacological perturbations, organoid cultures, and single-cell and spatial transcriptomics, we show that eosinophils promote goblet cell differentiation in a stem-cell-intrinsic manner, leading to increased mucus production. This adaptation culminates during lactation, limits pathogen entry and dissemination, conferring broad innate protection against enteric bacterial infections. Remarkably, both eosinophil accumulation and goblet cell induction persist after lactation, revealing durable remodeling of the intestinal immune and epithelial landscapes with sustained innate defense. Our findings demonstrate that, despite a general trend toward systemic immunosuppression during reproduction, the maternal intestine undergoes remodeling to strengthen innate defense against enteric pathogens, a mechanism that may have evolved to protect mothers and offspring in pathogen-rich environments. More broadly, our work establishes a framework for studying tissue immune adaptation across the reproductive cycle and highlights that tissue can retain memory of physiological states, with lasting implications for host defense and reproductive health.

Datasets8
Size~89.1 GB
Assay10x Xenium
Samplemouse · small intestine
KindComparison
Flag a data issue
10.1038/s41586-026-10531-6 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("geo-gse296053")
cohort.members        # the 8 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse296053")
coll.ordered_artifacts.to_dataframe()   # the 8 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse296053 --dest data/

Licenses: 8 NCBI GEO policy

Eosinophils drive intestinal remodelling and innate defence in reproduction.

Mammalian reproduction requires substantial immune adaptations to safeguard reproductive success and to ultimately shape the evolutionary trajectories of a species. Systemic and placental immunity shift towards tolerance during pregnancy<sup>1,2</sup>; however, how maternal immunity adapts in barrier tissues-which are sites of frequent infection and inflammation-from pregnancy until the postpartum lactation period remains poorly understood. Here we report a previously unrecognized role for eosinophils, a type of granulocyte typically associated with allergies and helminth infections<sup>3,4</sup>, in remodelling the intestinal barrier during reproduction. Beginning in pregnancy and peaking during lactation, eosinophils accumulate in the small intestine in the absence of infection or inflammation. Using genetic and pharmacological perturbations, organoid cultures and single-cell and spatial transcriptomics, we show that eosinophils promote goblet cell differentiation in a stem-cell-intrinsic manner that leads to increased mucus production. This remodelling culminates during lactation and limits pathogen entry and dissemination to confer broad innate protection against enteric bacterial infections. Moreover, in mice, intestinal remodelling and innate defence persist weeks after lactation cessation. Our findings demonstrate that despite a general trend towards systemic immune modulation during reproduction, the maternal intestine undergoes remodelling to strengthen innate defence, a mechanism that may have evolved to protect mothers and offspring in pathogen-rich environments. More broadly, we establish a framework for studying tissue-specific immune adaptation across the reproductive cycle and highlight that tissues can retain changes following physiological reproduction, with lasting implications for host defence and women's health.

Open in Vitessce
10x Xenium
Mouse small intestine
GSM8964407
mouse small intestine 7.0 GB 365,769 cells bronze NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuesmall intestine
Size7.0 GB
Cells365,769
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse small intestine
GSM9394260
mouse small intestine 14.1 GB 609,695 cells bronze NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuesmall intestine
Size14.1 GB
Cells609,695
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse small intestine
GSM8964406
mouse small intestine 7.4 GB 356,680 cells bronze NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuesmall intestine
Size7.4 GB
Cells356,680
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse small intestine
GSM8964409
mouse small intestine 13.1 GB 575,811 cells bronze NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuesmall intestine
Size13.1 GB
Cells575,811
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse small intestine
GSM9394261
mouse small intestine 14.7 GB 613,501 cells bronze NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuesmall intestine
Size14.7 GB
Cells613,501
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse small intestine
GSM9394259
mouse small intestine 8.8 GB 412,822 cells bronze NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuesmall intestine
Size8.8 GB
Cells412,822
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse small intestine
GSM8964408
mouse small intestine 15.1 GB 722,119 cells bronze NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuesmall intestine
Size15.1 GB
Cells722,119
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
10x Xenium
Mouse small intestine
GSM9394258
mouse small intestine 9.0 GB 384,151 cells bronze NCBI GEO policy
Technology10x Xenium
Organismmouse
Tissuesmall intestine
Size9.0 GB
Cells384,151
bronze NCBI GEO policy Open in Vitessce

Cite this collection

doi.org/10.1038/s41586-026-10531-6 ↗
BibTeX
@article{Huang_2026,
  title = {Eosinophils drive intestinal remodelling and innate defence in reproduction},
  volume = {654},
  ISSN = {1476-4687},
  url = {http://dx.doi.org/10.1038/s41586-026-10531-6},
  DOI = {10.1038/s41586-026-10531-6},
  number = {8117},
  journal = {Nature},
  publisher = {Springer Science and Business Media LLC},
  author = {Huang, Chenyan and Sun, Amanda and Reyes, Jojo and Ribeiro de Souza, Jessica and Cafiero, Thomas R. and Antunes Fernandes, Krist H. and Oliveira, Fabricio Marcus Silva and Qiao, Yujie and Gazzinelli-Guimaraes, Pedro and Pritykin, Yuri and Lim, Ai Ing},
  year = {2026},
  month = May,
  pages = {209–218}
}