Collections / geo-gse295815

geo-gse295815

Datasets9
Size~971 MB
AssayStereo-seq
Samplemouse · forebrain
KindOther
Flag a data issue
Download the whole collection
Python · sddb client 
from sddb import Catalog

cohort = Catalog().collection("geo-gse295815")
cohort.members        # the 9 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Install (Python 3.12+) Docs →
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse295815")
coll.ordered_artifacts.to_dataframe()   # the 9 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Install (Python 3.12+) Docs →
Shell 
# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse295815 --dest data/
Install (Python 3.12+) Docs →

Licenses: 9 NCBI GEO policy

Member datasets · 9
Open in Vitessce
Stereo-seq
Mouse forebrain
GSM8958032
mouse forebrain 166 MB 35,768 obs bronze NCBI GEO policy
TechnologyStereo-seq
Organismmouse
Tissueforebrain
Size166 MB
Obs35,768
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
Stereo-seq
Mouse forebrain
GSM8958031
mouse forebrain 94.9 MB 20,524 obs bronze NCBI GEO policy
TechnologyStereo-seq
Organismmouse
Tissueforebrain
Size94.9 MB
Obs20,524
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
Stereo-seq
Mouse forebrain
GSM8958026
mouse forebrain 73.4 MB 11,578 obs bronze NCBI GEO policy
TechnologyStereo-seq
Organismmouse
Tissueforebrain
Size73.4 MB
Obs11,578
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
Stereo-seq
Mouse forebrain
GSM8958030
mouse forebrain 107 MB 20,650 obs bronze NCBI GEO policy
TechnologyStereo-seq
Organismmouse
Tissueforebrain
Size107 MB
Obs20,650
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
Stereo-seq
Mouse forebrain
GSM8958033
mouse forebrain 122 MB 26,238 obs bronze NCBI GEO policy
TechnologyStereo-seq
Organismmouse
Tissueforebrain
Size122 MB
Obs26,238
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
Stereo-seq
Mouse forebrain
GSM8958036
mouse forebrain 105 MB 27,490 obs bronze NCBI GEO policy
TechnologyStereo-seq
Organismmouse
Tissueforebrain
Size105 MB
Obs27,490
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
Stereo-seq
Mouse forebrain
GSM8958034
mouse forebrain 157 MB 32,001 obs bronze NCBI GEO policy
TechnologyStereo-seq
Organismmouse
Tissueforebrain
Size157 MB
Obs32,001
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
Stereo-seq
Mouse forebrain
GSM8958029
mouse forebrain 79.8 MB 16,736 obs bronze NCBI GEO policy
TechnologyStereo-seq
Organismmouse
Tissueforebrain
Size79.8 MB
Obs16,736
bronze NCBI GEO policy Open in Vitessce
Open in Vitessce
Stereo-seq
Mouse forebrain
GSM8958028
mouse forebrain 65.0 MB 10,513 obs bronze NCBI GEO policy
TechnologyStereo-seq
Organismmouse
Tissueforebrain
Size65.0 MB
Obs10,513
bronze NCBI GEO policy Open in Vitessce