Collections / Spatially resolved chimeric analysis reveals extracellular CKB-mediated ATP uptake at the glioma-astrocyte invasive front

Spatially resolved chimeric analysis reveals extracellular CKB-mediated ATP uptake at the glioma-astrocyte invasive front

Glioblastoma (GBM) is a highly invasive primary brain tumor that, although rarely metastasizing outside the brain, frequently infiltrates surrounding brain tissue. This infiltrative growth may exploit the brain’s metabolic support system, which involves various brain-resident cells providing essential nutrients and maintaining energy balance. In this study, we investigated the metabolic dependencies of infiltrative GBM cells by combining spatially resolved transcriptomic profiling with advanced computational methods in xenografted GBM models. Our findings reveal that GBM cells upregulate creatine kinase brain type (CKB) at the leading edge to adapt to local energy deprivation. CKB facilitates the conversion of creatine to phosphocreatine, utilizing ATP supplied by astrocytes to support tumor cell survival and invasion. Targeting CKB with cyclocreatine significantly reduced tumor size and restricted infiltrative growth in vivo, indicating that GBM cells utilize CKB to harness extracellular ATP via the creatine pathway. These findings suggest that targeting CKB in GBM may offer a novel therapeutic strategy to combat infiltrative growth in this aggressive cancer.

Datasets4
Size~151 MB
AssayVisium
Samplemouse · brain
KindOther
Flag a data issue
PMID:40991701 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("geo-gse283959")
cohort.members        # the 4 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse283959")
coll.ordered_artifacts.to_dataframe()   # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse283959 --dest data/

Licenses: 4 NCBI GEO policy

Open in Vitessce
Visium
Mouse brain
GSM8674929
mouse brain glioblastoma 48.6 MB 2,263 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuebrain
Conditionglioblastoma
Size48.6 MB
Spots2,263
Magnificationother · 3.263 µm/px
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM8674927
mouse brain glioblastoma 30.2 MB 3,894 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuebrain
Conditionglioblastoma
Size30.2 MB
Spots3,894
Magnificationother · 3.411 µm/px
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM8674930
mouse brain glioblastoma 33.9 MB 2,255 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuebrain
Conditionglioblastoma
Size33.9 MB
Spots2,255
Magnificationother · 3.333 µm/px
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse brain
GSM8674928
mouse brain glioblastoma 38.7 MB 2,116 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissuebrain
Conditionglioblastoma
Size38.7 MB
Spots2,116
Magnificationother · 3.317 µm/px
bronze H&E NCBI GEO policy Open in Vitessce

Cite this collection

doi.org/10.1126/sciadv.adv5673 ↗
BibTeX
@article{Yang_2025,
  title = {Glioblastoma exploits ATP from leading-edge astrocytes to fuel its infiltrative growth revealed by spatially resolved chimeric analysis},
  volume = {11},
  ISSN = {2375-2548},
  url = {http://dx.doi.org/10.1126/sciadv.adv5673},
  DOI = {10.1126/sciadv.adv5673},
  number = {39},
  journal = {Science Advances},
  publisher = {American Association for the Advancement of Science (AAAS)},
  author = {Yang, Gaoxia and Niu, Xiaodong and Gan, Jieying and Yu, Tianping and Li, Menghan and Xiao, Peng and Zhang, Rui and He, Ping and Yang, Yuan and Cui, Yi and Huang, Xiaoyi and Wang, Yuan and Mao, Qing and Zhou, Ran},
  year = {2025},
  month = Sept
}