Collections / Delineation of a thrombin receptor-stimulated vascular smooth muscle cell transition to a plaque-stabilising fibrous cap-associated state

Delineation of a thrombin receptor-stimulated vascular smooth muscle cell transition to a plaque-stabilising fibrous cap-associated state

Aims: Vascular smooth muscle cells (VSMCs) accumulate in atherosclerotic plaques and exhibit remarkable phenotypic plasticity, contributing to both plaque growth and stability. The plaque-stabilising fibrous cap is rich in VSMC-derived cells, yet the cellular transitions and regulatory mechanisms governing fibrous cap formation remain unclear. We aimed to delineate the VSMC phenotypic transitions associated with this critical process. Methods and Results: Mapping of lineage-traced VSMCs during plaque development revealed investment of VSMCs prior to fibrous cap formation. Using single-cell RNA-sequencing (scRNA-seq) profiles of lineage-traced VSMCs from atherosclerotic and acutely injured mouse arteries, we identified a disease-specific VSMC state co-expressing contractile genes with extracellular matrix (ECM) components (including fibrillar collagens and elastin) and NOTCH3, which are associated with fibrous cap formation. Computational trajectory analysis predicted that this proposed fibrous cap-related VSMC (fcVSMC) state arises from a previously described plastic, intermediate VSMC population expressing SCA1 and VCAM1. Clonal analysis further showed that NOTCH3+ fcVSMCs derive from intermediate VSMCs in both atherosclerosis and an acute vascular injury model, suggesting a conserved disease-relevant mechanism. The fcVSMCs were enriched in plaque fibrous caps compared to lesion cores, consistent with a role in fibrous cap formation. By combining scRNA-seq trajectory analysis and spatial transcriptomics of human atherosclerotic plaques, we identified protease-activated receptor-1 (PAR1) as a candidate regulator of fcVSMC generation. PAR1 was expressed by VSMCs in human plaque fibrous caps and, functionally, PAR1 activation by thrombin induced expression of contractile genes and ECM components associated with the fcVSMC state in cultured human VSMCs. Conclusions: Our findings identify a VSMC transition linked to fibrous cap formation in atherosclerosis and show this is modelled by vascular injury. We identify VSMC-expressed PAR1 as a potential therapeutic target for promoting plaque stability by driving the transition to the matrix-producing, fibrous cap-associated VSMC state.

Datasets3
Size~46.0 MB
AssayVisium
Samplehuman · artery
KindOther
Flag a data issue
www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE274572 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("geo-gse274572")
cohort.members        # the 3 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse274572")
coll.ordered_artifacts.to_dataframe()   # the 3 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse274572 --dest data/

Licenses: 3 NCBI GEO policy

Open in Vitessce
Visium
Human artery
GSM8453028
human artery atherosclerosis 13.7 MB 2,329 spots silver H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissueartery
Conditionatherosclerosis
Size13.7 MB
Spots2,329
silver H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human artery
GSM8453030
human artery atherosclerosis 15.8 MB 2,426 spots silver H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissueartery
Conditionatherosclerosis
Size15.8 MB
Spots2,426
silver H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Human artery
GSM8453031
human artery atherosclerosis 16.6 MB 2,470 spots silver H&E NCBI GEO policy
TechnologyVisium
Organismhuman
Tissueartery
Conditionatherosclerosis
Size16.6 MB
Spots2,470
silver H&E NCBI GEO policy Open in Vitessce

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No linked publication found — please cite the data source.