Collections / Lgr5 Marks Stem/Progenitor Cells Contributing to Epithelial and Muscle Development in the Mouse Esophagus

Lgr5 Marks Stem/Progenitor Cells Contributing to Epithelial and Muscle Development in the Mouse Esophagus

The existence and function of Lgr5+ cells within the developing esophagus remains unknown. Here, we document multiple discrete Lgr5+ populations in the developing mouse esophagus, predominantly within nascent epithelial and external muscle layers. Lgr5 expression initially emerges in the developing proximal embryonic epithelium, but progressively extends distally and persists within the distal epithelium of neonates. Fate mapping and ablation analyses reveal a long-term contribution of epithelial Lgr5+ cells to esophageal organogenesis. Additionally, Lgr5-expressing cells are present in the developing external muscle layer, particularly during the development of the striated component. Fate mapping reveals a significant contribution of these embryonic Lgr5+ cells to the adult muscle layer. Embryonic Lgr5+ epithelial cells are also found to be important for regulating epithelial development, serving as a key source of Wnt6, among other ligands, to promote epithelial cell proliferation and formation of epithelial layers. These findings significantly enhance our understanding of esophageal development and shed light on the involvement of Lgr5+ stem/progenitor cells during organogenesis. Importantly, this study lays the foundation for investigating esophageal diseases related to the Lgr5+ stem/progenitor cell pool.

Datasets4
Size~183 MB
AssayVisium
Samplemouse · esophagus
KindTime course
Flag a data issue
PMID:39164270 ↗
Python · sddb client
from sddb import Catalog

cohort = Catalog().collection("geo-gse271795")
cohort.members        # the 4 datasets as a table

print(cohort.licenses())              # check the terms before you download

sdatas = cohort.to_dict()             # {uid: SpatialData}, cached locally
# or keep the .zarr files in a folder of your choice:
# sdatas = cohort.to_dict(dest="data/")
Python · lamindb

Needs pip install lamindb and network access to the Lamin database, which is limited during the alpha. If it fails, use the Client tab.

import lamindb as ln

db = ln.DB("scverse/spatialdata-db")
coll = db.Collection.get(key="geo-gse271795")
coll.ordered_artifacts.to_dataframe()   # the 4 members, ordered

# download every member .zarr to the local cache:
paths = [a.cache() for a in coll.ordered_artifacts.all()]
Shell
# sddb client: download every member .zarr into data/
sddb-cli download --collection geo-gse271795 --dest data/

Licenses: 4 NCBI GEO policy

Open in Vitessce
Visium
Mouse esophagus
GSM8385443
mouse esophagus 83.1 MB 3,593 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissueesophagus
Size83.1 MB
Spots3,593
Magnificationother · 3.920 µm/px
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse esophagus
GSM8385444
mouse esophagus 12.0 MB 366 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissueesophagus
Size12.0 MB
Spots366
Magnificationother · 3.342 µm/px
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse esophagus
GSM8385442
mouse esophagus 78.0 MB 3,228 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissueesophagus
Size78.0 MB
Spots3,228
bronze H&E NCBI GEO policy Open in Vitessce
Open in Vitessce
Visium
Mouse esophagus
GSM8385445
mouse esophagus 9.6 MB 271 spots bronze H&E NCBI GEO policy
TechnologyVisium
Organismmouse
Tissueesophagus
Size9.6 MB
Spots271
bronze H&E NCBI GEO policy Open in Vitessce

Cite this collection

doi.org/10.1038/s41467-024-51559-4 ↗
BibTeX
@article{Kostic_2024,
  title = {Lgr5 marks stem/progenitor cells contributing to epithelial and muscle development in the mouse esophagus},
  volume = {15},
  ISSN = {2041-1723},
  url = {http://dx.doi.org/10.1038/s41467-024-51559-4},
  DOI = {10.1038/s41467-024-51559-4},
  number = {1},
  journal = {Nature Communications},
  publisher = {Springer Science and Business Media LLC},
  author = {Kostic, Lana and Leung, Carly and Ahmad Murad, Katzrin and Kancheva, Snezhina and Perna, Stefano and Lee, Bernett and Barker, Nick},
  year = {2024},
  month = Aug
}